View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_4 (Length: 561)
Name: NF1244_low_4
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_4 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 464; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 464; E-Value: 0
Query Start/End: Original strand, 73 - 561
Target Start/End: Complemental strand, 812422 - 811932
Alignment:
| Q |
73 |
gtagattatactgatccagatatattcataagcttcttggaggtatcagatgaatccaactcattgccagctctagtaagcaaggagacaagtaaaagga |
172 |
Q |
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| T |
812422 |
gtagattatactgatccggatatattcataagcttcttggaggtatcagatgaatccaactcattgccagctctagtaagcaaggagacaagtaaaagga |
812323 |
T |
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| Q |
173 |
agcatgttacccttgttcttgatttggatggtaattataattcttctgtctgctgatgtgtatttattgttgtagagtctcatat--gtgccttaatttg |
270 |
Q |
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| T |
812322 |
agcatgttacccttgttcttgatttggatggtaattataattcttctgtctgctgatgtgtatttatcgttgtagagtctcatatatgtgccttaatttg |
812223 |
T |
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| Q |
271 |
tttcagttgaaacttcttattttaaaatgtataaaataattttgttgattcaccttcacagaaacactgatccactctacaatggcgcaatatgatagtc |
370 |
Q |
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| T |
812222 |
tttcagttgaaacttcttatgttaaaatgtataaaataattttgttgattcaccttcacagaaacactgatccactctacaatggcgcaatatgatagtc |
812123 |
T |
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| Q |
371 |
gtgccgacttcacaattccagttttacttgacaaggagtacactgtctatgtgcgaaaaaggcccttcctccacgagtttttggagagagtatcgaagat |
470 |
Q |
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| T |
812122 |
gtgccgacttcacaattccagttttacttgacaaggagtacactgtctatgtgcgaaaaaggcccttcctccacgagtttttggagagagtatcgaagat |
812023 |
T |
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| Q |
471 |
gtttgagatcgtcattttcacagcaagtaaaaagatttatgctgaaaagttgctagctgttcttgatcctgacaaaaaacttttttctcga |
561 |
Q |
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| T |
812022 |
gtttgagatcgtcattttcacagcaagtaaaaagatttatgctgaaaagttgctagatgttcttgatcctgacaaaaaacttttttctcga |
811932 |
T |
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