View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1244_low_41 (Length: 253)
Name: NF1244_low_41
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_41 |
 | |
|
| [»] scaffold0035 (1 HSPs) |
| | |
|
| [»] scaffold0045 (1 HSPs) |
| | |
|
| [»] scaffold0596 (1 HSPs) |
| | |
|
| [»] scaffold0096 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 202; Significance: 1e-110; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 1616010 - 1615785
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1616010 |
aacattgttaatgactttgtaaccattaaatctaaatggtttttgctccaaacaagggagatcgttggatcgcatcatttggctaagcatgcatctcatc |
1615911 |
T |
|
| Q |
101 |
-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctatacaccaaattccaatatagcttatagtgtaaatatacacctaaatggtttt |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1615910 |
ctttgatctaatttgagtcaaactttcaaatttgatgtatatttcctatacaccaaattccaatatagcttatagtgtaaatatacacctaaatggtttt |
1615811 |
T |
|
| Q |
200 |
ttcttgggttttgattcgtctccact |
225 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
1615810 |
ttcttgggttttgattcgtctccact |
1615785 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 18355383 - 18355260
Alignment:
| Q |
27 |
taaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat-ctttgatctaatttgagtcaaactt |
124 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||||||||||||| |||||||||||||| |||||||||||| |||| ||||||| ||||||||| || |
|
|
| T |
18355383 |
taaacctaaatggttttggctccaaaacaagggaggtcgttggatctcatcatttggctaagcatgcatctcatcctttaatctaatctgagtcaaattt |
18355284 |
T |
|
| Q |
125 |
tcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
18355283 |
tcaaatttgatgtatatttcctat |
18355260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 23349050 - 23348927
Alignment:
| Q |
27 |
taaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactt |
124 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
23349050 |
taaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattt |
23348951 |
T |
|
| Q |
125 |
tcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
23348950 |
tcaaatttgatgtatatttcctat |
23348927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 12741739 - 12741862
Alignment:
| Q |
27 |
taaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactt |
124 |
Q |
| |
|
||||||||||||||||| ||| |||| ||| ||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
12741739 |
taaacctaaatggttttggctccaaaacaaaggaggccgttggatctcatcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattt |
12741838 |
T |
|
| Q |
125 |
tcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
12741839 |
tcaaatttgatgtatatttcctat |
12741862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 49 - 179
Target Start/End: Original strand, 24454588 - 24454720
Alignment:
| Q |
49 |
caaacaagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc-tttgatctaatttgagt-caaactttcaaatttgatgtatatttcct |
146 |
Q |
| |
|
||||||||| || ||||||||| |||||||||||| |||| ||||||||| ||||||||||| ||| | |||||||||||||||||||| | |||||| |
|
|
| T |
24454588 |
caaacaaggagggccgttggatctcatcatttggcttgacattcatctcatcctttgatctaatctgacttcaaactttcaaatttgatgtctttttcct |
24454687 |
T |
|
| Q |
147 |
atacaccaaattccaatatagcttatagtgtaa |
179 |
Q |
| |
|
|| |||| |||||| |||||||||||||||||| |
|
|
| T |
24454688 |
atgcaccgaattcccatatagcttatagtgtaa |
24454720 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 10328938 - 10328851
Alignment:
| Q |
50 |
aaacaagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc--tttgatctaatttgagtcaaactttcaaatttgat |
135 |
Q |
| |
|
|||||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||| || ||||||||| |
|
|
| T |
10328938 |
aaacaagggaggccgttggatctcatcatttggctaagcatgcatctcatccttttgatctaatctgagtcaaatttgaaaatttgat |
10328851 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 1 - 179
Target Start/End: Complemental strand, 27541654 - 27541475
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc |
100 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||||||| ||| ||| ||||||||||| | ||||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
27541654 |
aacattgctaatgactttgcaaaccctaaacctaaatggctttggctccaaacaagggacgccgttggatctcatcatttggctaagcatgcatctcatc |
27541555 |
T |
|
| Q |
101 |
-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctatacaccaaattccaatatagcttatagtgtaa |
179 |
Q |
| |
|
||||||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |
|
|
| T |
27541554 |
ctttgatctaatctgaatcaaactttcaaatttgatgtatatttcctatgcaccaaattcccatatagcttatagtgtaa |
27541475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 14678117 - 14677968
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
14678117 |
aacattgctaatgactttgaaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatctcat |
14678018 |
T |
|
| Q |
100 |
c-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14678017 |
cctttgatctaatctgagtcaaactttcaaatttaatgtatatttcctat |
14677968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 9 - 148
Target Start/End: Original strand, 5657804 - 5657945
Alignment:
| Q |
9 |
taatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc-tttgat |
106 |
Q |
| |
|
||||||||||| || | ||||||||||| ||||| ||| |||| ||||||||| ||||||||| |||||||||| ||| ||||||||||||| |||||| |
|
|
| T |
5657804 |
taatgactttgcaaaccctaaacctaaatagttttggctccaaaacaagggaggccgttggatctcatcatttggttaagcatgcatctcatcctttgat |
5657903 |
T |
|
| Q |
107 |
ctaatttgagtcaaactttcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
5657904 |
ctaatctgagtcaaactttcaaatttgatgtatatttcctat |
5657945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 31100968 - 31100819
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| ||||||||||| || ||||||||||||||||| ||| |||| ||||||||| |||| |||| |||||||||| ||| |||| ||||||| |
|
|
| T |
31100968 |
aacattgctaatgactttgcaaatcctaaacctaaatggttttggctccaaaacaagggaggccgttcgatctcatcatttggttaagcatgtatctcat |
31100869 |
T |
|
| Q |
100 |
c-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31100868 |
cctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
31100819 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0035 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0035
Description:
Target: scaffold0035; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 35088 - 35237
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||||||||||| ||| |||| |||||||||| |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
35088 |
aacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggttgttggatctcatcatttggctaagcatgcatctcat |
35187 |
T |
|
| Q |
100 |
c-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
35188 |
cctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
35237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 1262113 - 1262262
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||||||||||| ||| |||| ||||||| | ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
1262113 |
aacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaagggaagccgttggatctcatcatttggctaagcatgcatctcat |
1262212 |
T |
|
| Q |
100 |
c-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
1262213 |
cctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
1262262 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 48849903 - 48849754
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||| ||| |||| ||||||| | |||||||| |||||||||||||| |||||||||||| |
|
|
| T |
48849903 |
aacattgctaatgactttgtaaatcctaaacctaaatggttttggctccaaaacaagggattttgttggatctcatcatttggctaagcatgcatctcat |
48849804 |
T |
|
| Q |
100 |
c-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
48849803 |
cctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
48849754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 43071452 - 43071329
Alignment:
| Q |
27 |
taaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactt |
124 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
43071452 |
taaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattt |
43071353 |
T |
|
| Q |
125 |
tcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
43071352 |
tcaaatttgatgtatatttcctat |
43071329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 26910077 - 26909928
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| |||| |||||| || | ||||||||||||| ||| ||| |||| |||||||| | ||||||| ||||||||||||| |||||||||||| |
|
|
| T |
26910077 |
aacattgctaataactttgcaaaccctaaacctaaatggatttggctccaaaacaagggagaccattggatcttatcatttggctaagcatgcatctcat |
26909978 |
T |
|
| Q |
100 |
c-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
26909977 |
cctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
26909928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 86; Significance: 3e-41; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 22009624 - 22009475
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| |||||| |||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
22009624 |
aacattgctaatgaatttgcaaaccctaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatctcat |
22009525 |
T |
|
| Q |
100 |
c-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
22009524 |
cctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
22009475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 30442617 - 30442494
Alignment:
| Q |
27 |
taaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactt |
124 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
30442617 |
taaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattt |
30442518 |
T |
|
| Q |
125 |
tcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
30442517 |
tcaaatttgatgtatatttcctat |
30442494 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 7473559 - 7473436
Alignment:
| Q |
27 |
taaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactt |
124 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||| ||||||||| |||||||| ||||| ||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
7473559 |
taaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttagctaagcatgcatctcatcctttgatctaatctgagtcaaattt |
7473460 |
T |
|
| Q |
125 |
tcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7473459 |
tcaaatttgatgtatatttcctat |
7473436 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 9043853 - 9043976
Alignment:
| Q |
27 |
taaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat-ctttgatctaatttgagtcaaactt |
124 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||| |||||||||||| |||||||||||| ||||||||| || |
|
|
| T |
9043853 |
taaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattt |
9043952 |
T |
|
| Q |
125 |
tcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
| |||||||||||||||||||||| |
|
|
| T |
9043953 |
ttaaatttgatgtatatttcctat |
9043976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 82; Significance: 8e-39; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 33045527 - 33045378
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
33045527 |
aacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttggatctcatcatttggttaagcatgcatctcat |
33045428 |
T |
|
| Q |
100 |
c-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
33045427 |
cctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
33045378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 10092537 - 10092636
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||||||||||||||| || | |||| |||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
10092537 |
aacattgttaatgactttgcaaaccctaaatctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctaagcatgcatctcat |
10092636 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 9 - 86
Target Start/End: Original strand, 3065731 - 3065808
Alignment:
| Q |
9 |
taatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcatcatttggctaa |
86 |
Q |
| |
|
||||||||||| || | ||||||||||||||||| ||| |||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
3065731 |
taatgactttgcaaaccctaaacctaaatggttttggctccaaacaagggagaccgttggatctcatcatttggctaa |
3065808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 27 - 111
Target Start/End: Original strand, 8976455 - 8976541
Alignment:
| Q |
27 |
taaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgcatcatttggctaaacatgcatctcat-ctttgatctaat |
111 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||| ||||||||| ||| |||| |||||||||||||||||| |||||||||||| |
|
|
| T |
8976455 |
taaacctaaatggttttggctccaaaataagggagaccgttggatctcattatttagctaaacatgcatctcatcctttgatctaat |
8976541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 117 - 153
Target Start/End: Original strand, 10092641 - 10092677
Alignment:
| Q |
117 |
tcaaactttcaaatttgatgtatatttcctatacacc |
153 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10092641 |
tcaaactttcaaatttgatgtatatttcctatgcacc |
10092677 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 8e-39; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 31685102 - 31685251
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||||||||||| ||| |||| |||||||| ||||| ||| |||||||||||||| |||||||||||| |
|
|
| T |
31685102 |
aacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaataagggaggccgttgaatctcatcatttggctaagcatgcatctcat |
31685201 |
T |
|
| Q |
100 |
c-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
31685202 |
cctttgatctaatctgagtcaaactttcaaatttgatgtatatttcctat |
31685251 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 19882207 - 19882058
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| |||||| |||||| | ||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
19882207 |
aacattgctaatgaaattgtaaaccctaaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttggctaagcatgcatctcat |
19882108 |
T |
|
| Q |
100 |
c-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
| ||||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
19882107 |
cctttgatctaatctgagtcaaattttcaaatttgatgtatatttcctat |
19882058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 27 - 148
Target Start/End: Complemental strand, 53973356 - 53973233
Alignment:
| Q |
27 |
taaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactt |
124 |
Q |
| |
|
||||||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||||| | ||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
53973356 |
taaacctaaatggttttggctccaaatcaagggaggccgttggatctcatcatttggctaagcctgcatctcatcctttgatctaatctgagtcaaattt |
53973257 |
T |
|
| Q |
125 |
tcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
53973256 |
tcaaatttgatgtatatttcctat |
53973233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 17681792 - 17681944
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcatcatttggctaaacatgcatctcat- |
99 |
Q |
| |
|
|||||||||||||| |||| || | ||||||||||||||||| ||| |||||||||| || ||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
17681792 |
aacattgttaatgattttgcaaaccctaaacctaaatggttttggctccaaacaaggggggccgttggatctcatcatttggttaagcatgcatctcatc |
17681891 |
T |
|
| Q |
100 |
ctttgatctaat-ttgagtcaaactttcaaatttgatgtatatttcctataca |
151 |
Q |
| |
|
|||||||||||| |||||||||| ||| |||||| |||||||||||| ||||| |
|
|
| T |
17681892 |
ctttgatctaatcttgagtcaaatttttaaatttaatgtatatttcccataca |
17681944 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 37982400 - 37982523
Alignment:
| Q |
27 |
taaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactt |
124 |
Q |
| |
|
||||||||||||||||| ||| |||| |||||||| ||||||||| |||||||||||||| ||||||||||||| ||| ||||||| ||||||||| || |
|
|
| T |
37982400 |
taaacctaaatggttttggctccaaaacaagggagaccgttggatctcatcatttggctaagcatgcatctcatcctttaatctaatctgagtcaaattt |
37982499 |
T |
|
| Q |
125 |
tcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
37982500 |
tcaaatttgatgtatatttcctat |
37982523 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 27 - 113
Target Start/End: Complemental strand, 12538705 - 12538618
Alignment:
| Q |
27 |
taaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcatcatttggctaaacatgcatctcat-ctttgatctaattt |
113 |
Q |
| |
|
||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
12538705 |
taaacctaaatggttttggctccaaacaagggaggccgttggatctcatcatttggctaagcatgcatcacatcctttgatctaattt |
12538618 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 2549962 - 2550079
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| ||||||||||| || | |||||||||||| |||| ||| |||| ||||||||| ||||||||| ||||||||||||| |||||||||||| |
|
|
| T |
2549962 |
aacattgctaatgactttgcaaaccctaaacctaaatgattttggctccaaaacaagggaggccgttggatct-atcatttggctaagcatgcatctcat |
2550060 |
T |
|
| Q |
100 |
-ctttgatctaatttgagt |
117 |
Q |
| |
|
||||||| |||| ||||| |
|
|
| T |
2550061 |
cctttgatttaatctgagt |
2550079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 24761994 - 24761878
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||||||||||| ||| |||| ||| | | ||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
24761994 |
aacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacaatgctgaccgttggatctcatcatttggctcagcatgcatctcat |
24761895 |
T |
|
| Q |
100 |
-ctttgatctaatttga |
115 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24761894 |
cctttgatctaatttga |
24761878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 24815940 - 24816056
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||||||||||| ||| |||| | | | || ||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
24815940 |
aacattgctaatgactttgcaaaccctaaacctaaatggttttggctccaaaacgatgctggccgttggatctcatcatttggctcagcatgcatctcat |
24816039 |
T |
|
| Q |
100 |
-ctttgatctaatttga |
115 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
24816040 |
cctttgatctaatttga |
24816056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 53027785 - 53027732
Alignment:
| Q |
63 |
cgttggatcgcatcatttggctaaacatgcatctcat-ctttgatctaatttga |
115 |
Q |
| |
|
||||||||| |||||||||||| | |||||||||||| |||||||||||||||| |
|
|
| T |
53027785 |
cgttggatctcatcatttggctcagcatgcatctcatcctttgatctaatttga |
53027732 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 144
Target Start/End: Complemental strand, 29863457 - 29863312
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| | ||||||||| || | ||||||||||||||||| ||| |||| ||||||||| ||||||||| |||||||||||| | |||||||||||| |
|
|
| T |
29863457 |
aacattgctcatgactttgcaaaccgtaaacctaaatggttttggctccaaaacaagggaggccgttggatctcatcatttggctgagcatgcatctcat |
29863358 |
T |
|
| Q |
100 |
c-tttgatctaatttgagtcaaactttcaaatttgatgtatatttc |
144 |
Q |
| |
|
| ||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
29863357 |
cctttgatctaatctgagtcaaactttcaaatttgatgtatatttc |
29863312 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 74; Significance: 5e-34; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 1 - 148
Target Start/End: Complemental strand, 11730 - 11581
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaa-caagggaggtcgttggatcgcatcatttggctaaacatgcatctcat |
99 |
Q |
| |
|
||||||| ||||||||||| || | ||||||||| ||||||| || |||| ||||||||| ||||||||| |||||||||| ||| |||||||||||| |
|
|
| T |
11730 |
aacattgctaatgactttgcaaaccctaaacctaactggttttgactccaaaacaagggaggccgttggatctcatcatttggttaagcatgcatctcat |
11631 |
T |
|
| Q |
100 |
c-tttgatctaatttgagtcaaactttcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
| |||||| |||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
11630 |
cctttgatttaatctgagtcaaactttcaaatttgatgtatatttcctat |
11581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0596 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: scaffold0596
Description:
Target: scaffold0596; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 27 - 148
Target Start/End: Original strand, 705 - 828
Alignment:
| Q |
27 |
taaacctaaatggtttttgcttcaaac-aagggaggtcgttggatcgcatcatttggctaaacatgcatctcatc-tttgatctaatttgagtcaaactt |
124 |
Q |
| |
|
||||||||||||||||| || |||| |||||||| ||||||||| |||||||||||||| ||||||||||||| ||||||||||| ||||||||| || |
|
|
| T |
705 |
taaacctaaatggttttgactccaaaataagggaggccgttggatctcatcatttggctaagcatgcatctcatcctttgatctaatctgagtcaaattt |
804 |
T |
|
| Q |
125 |
tcaaatttgatgtatatttcctat |
148 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
805 |
tcaaatttgatgtatatttcctat |
828 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0096 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: scaffold0096
Description:
Target: scaffold0096; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 127
Target Start/End: Original strand, 27435 - 27563
Alignment:
| Q |
1 |
aacattgttaatgactttgtaaccattaaacctaaatggtttttgcttcaaacaagggaggtcgttggatcgcatcatttggctaaacatgcatctcat- |
99 |
Q |
| |
|
||||||| |||||| |||| || | ||||||||||||||||| ||| ||||||||||||| ||||||||| |||||||||||||| |||||||||||| |
|
|
| T |
27435 |
aacattgctaatgattttgcaaaccctaaacctaaatggttttggctccaaacaagggaggccgttggatctcatcatttggctaagcatgcatctcatc |
27534 |
T |
|
| Q |
100 |
ctttgatctaatttga-gtcaaactttca |
127 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
|
|
| T |
27535 |
ctttgatctaatttgacttcaaactttca |
27563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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