View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_43 (Length: 248)
Name: NF1244_low_43
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 20 - 106
Target Start/End: Complemental strand, 24454409 - 24454323
Alignment:
| Q |
20 |
tggaaacagcgcaagctctactaaacccattaagttggaagaccaaaaatagaaaaagttgagttgcctacaatgttacaccaaagg |
106 |
Q |
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| T |
24454409 |
tggaaacagtacaagctctactaaacccattaagttggaagaccaaaaatagaaaaagttgagttgcctacaatgttacaccaaagg |
24454323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 212 - 248
Target Start/End: Original strand, 24454353 - 24454389
Alignment:
| Q |
212 |
tttttctatttttagtcttccaacttaatgggtttag |
248 |
Q |
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| T |
24454353 |
tttttctatttttggtcttccaacttaatgggtttag |
24454389 |
T |
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