View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_45 (Length: 241)
Name: NF1244_low_45
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_45 |
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| [»] chr6 (8 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 229; Significance: 1e-126; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2619130 - 2618890
Alignment:
| Q |
1 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccagctttattgtactcttctctcattttt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2619130 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtacctgctttattgtactcttctctcattttt |
2619031 |
T |
|
| Q |
101 |
ctagccaatcctatcatagttcttccatacatgaaaccaggaatcacaagtagtaccacaaaagggaacccaacaattgctaatctccataacaatgcaa |
200 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2619030 |
ctagccaatcccatcatagttcttccatacatgaaaccaggaatcacaagtagtaccacaaaagggaacccaacaattgccaatctccataacaatgcaa |
2618931 |
T |
|
| Q |
201 |
atgccactatgtatcctccaaagaaaatagatgtattcatc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
2618930 |
atgccactatgtatcctccaaagaaaatagatgtattcatc |
2618890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2678255 - 2678495
Alignment:
| Q |
1 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccagctttattgtactcttctctcattttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| |
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| T |
2678255 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccggcttgattgtactcttctctcattttt |
2678354 |
T |
|
| Q |
101 |
ctagccaatcctatcatagttcttccatacatgaaaccaggaatcacaagtagtaccacaaaagggaacccaacaattgctaatctccataacaatgcaa |
200 |
Q |
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|
||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2678355 |
ctagccaatcccatcaaagttctcccatacatgaaaccaggaatcacaagtagtaccacaaaagggaacccaacaattgctaatctccataacaatgcaa |
2678454 |
T |
|
| Q |
201 |
atgccactatgtatcctccaaagaaaatagatgtattcatc |
241 |
Q |
| |
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||||||||||||| | ||||| ||| ||||||| ||||||| |
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| T |
2678455 |
atgccactatgtagcttccaatgaacatagatgcattcatc |
2678495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 2585439 - 2585199
Alignment:
| Q |
1 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccagctttattgtactcttctctcattttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
2585439 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccagctttattgtactcttctctaattttt |
2585340 |
T |
|
| Q |
101 |
ctagccaatcctatcatagttcttccatacatgaaaccaggaatcacaagtagtaccacaaaagggaacccaacaattgctaatctccataacaatgcaa |
200 |
Q |
| |
|
|||||||| || ||| | ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2585339 |
ctagccaaccccatcgaaactctcccatacatgaaaccaggaatcacaagtagtaccacaaaagggaacccaacaattgctaatctccataacaaagcaa |
2585240 |
T |
|
| Q |
201 |
atgccactatgtatcctccaaagaaaatagatgtattcatc |
241 |
Q |
| |
|
||||||||||||||||||||| |||| |||||||||||||| |
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|
| T |
2585239 |
atgccactatgtatcctccaatgaaattagatgtattcatc |
2585199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2573777 - 2574017
Alignment:
| Q |
1 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccagctttattgtactcttctctcattttt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||| |
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| T |
2573777 |
tatggttttgctttctcctgcaaaggaataaacagttctgattgaagatattgcttgttgtgctattgtaccggctttattgtactcttctctaattttt |
2573876 |
T |
|
| Q |
101 |
ctagccaatcctatcatagttcttccatacatgaaaccaggaatcacaagtagtaccacaaaagggaacccaacaattgctaatctccataacaatgcaa |
200 |
Q |
| |
|
||||||||||| ||| | |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||| ||||||||||||||||||| |
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| T |
2573877 |
ctagccaatcccatcgaaattcttccatacatgaaaccaggaatcactagtagtaccaaaaaagggaacccaacaattgccaatctccataacaatgcaa |
2573976 |
T |
|
| Q |
201 |
atgccactatgtatcctccaaagaaaatagatgtattcatc |
241 |
Q |
| |
|
|||| ||||||| | ||||| ||| ||||||| ||||||| |
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| T |
2573977 |
atgctgctatgtagcttccaaggaacatagatgcattcatc |
2574017 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 1 - 231
Target Start/End: Original strand, 2601256 - 2601486
Alignment:
| Q |
1 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccagctttattgtactcttctctcattttt |
100 |
Q |
| |
|
|||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||| |
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| T |
2601256 |
tatggttttgttttctcctgtaaaggaataaacagttctaattgaagatattgcttgttctgctattgtacctgctttattgtactcttccctaattttt |
2601355 |
T |
|
| Q |
101 |
ctagccaatcctatcatagttcttccatacatgaaaccaggaatcacaagtagtaccacaaaagggaacccaacaattgctaatctccataacaatgcaa |
200 |
Q |
| |
|
||||||||||| ||| ||| |||||||||||||||||||||||||| |||| ||||| ||||||||||||||||||||| |||||||||||| |||||| |
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| T |
2601356 |
ctagccaatcccatcgaagtccttccatacatgaaaccaggaatcactagtaataccaaaaaagggaacccaacaattgccaatctccataacgatgcaa |
2601455 |
T |
|
| Q |
201 |
atgccactatgtatcctccaaagaaaataga |
231 |
Q |
| |
|
|||| ||||||| | ||||| ||| ||||| |
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| T |
2601456 |
atgctgctatgtagcttccaaggaacataga |
2601486 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 241
Target Start/End: Original strand, 2646037 - 2646277
Alignment:
| Q |
1 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccagctttattgtactcttctctcattttt |
100 |
Q |
| |
|
|||||||||| ||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||||||| || |||||| |
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|
| T |
2646037 |
tatggttttgttttctcctgtaaaggaataaacagttctgattgaagatattgcttgttctgctattgtaccagctcgattatactcttcactaattttt |
2646136 |
T |
|
| Q |
101 |
ctagccaatcctatcatagttcttccatacatgaaaccaggaatcacaagtagtaccacaaaagggaacccaacaattgctaatctccataacaatgcaa |
200 |
Q |
| |
|
||||||||||| ||| || |||| ||||||||||||||||||||||||||| || | |||||||||||| |||||||| ||||||||||| |||| || |
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|
| T |
2646137 |
ctagccaatcccatcgatgtccttcgatacatgaaaccaggaatcacaagtagaacaataaaagggaaccctacaattgccaatctccataataatgtaa |
2646236 |
T |
|
| Q |
201 |
atgccactatgtatcctccaaagaaaatagatgtattcatc |
241 |
Q |
| |
|
|||| ||||| || | ||||| ||| ||||||| ||||||| |
|
|
| T |
2646237 |
atgctactatatagcttccaatgaacatagatgcattcatc |
2646277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 12 - 213
Target Start/End: Complemental strand, 2447974 - 2447773
Alignment:
| Q |
12 |
tttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccagctttattgtactcttctctcatttttctagccaatcc |
111 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||| || ||||||||||| | |
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|
| T |
2447974 |
tttcccctgcaaaggaataaacagttctaattgaagatatcgcttgttctgctattgtaccagcttgattgtactcttctctgatatttctagccaacct |
2447875 |
T |
|
| Q |
112 |
tatcatagttcttccatacatgaaaccaggaatcacaagtagtaccacaaaagggaacccaacaattgctaatctccataacaatgcaaatgccactatg |
211 |
Q |
| |
|
|||||| | || ||| ||||| |||||| |||||| ||| ||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
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|
| T |
2447874 |
aatcataatcctcttatatatgaagccaggagtcacaattagaaccacaaaagggaacccaacaatggccaatctccataacaatgcaaatgccactatg |
2447775 |
T |
|
| Q |
212 |
ta |
213 |
Q |
| |
|
|| |
|
|
| T |
2447774 |
ta |
2447773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 92; E-Value: 8e-45
Query Start/End: Original strand, 5 - 212
Target Start/End: Complemental strand, 2431946 - 2431739
Alignment:
| Q |
5 |
gttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccagctttattgtactcttctctcatttttctag |
104 |
Q |
| |
|
||||||||||| ||| |||| |||||||||||||| || ||||||||||||||||| |||||||||||||||| ||||||||||||||| || ||||||| |
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|
| T |
2431946 |
gttttgctttcccctacaaaagaataaacagttcttatagaagatattgcttgttccgctattgtaccagcttgattgtactcttctctaatctttctag |
2431847 |
T |
|
| Q |
105 |
ccaatcctatcatagttcttccatacatgaaaccaggaatcacaagtagtaccacaaaagggaacccaacaattgctaatctccataacaatgcaaatgc |
204 |
Q |
| |
|
|||| | ||| | | || ||||||| ||||||| |||||||| || |||| ||||||||| |||||||| || ||||||||||| ||||||||||| |
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|
| T |
2431846 |
ccaacctcatcgaaatcctcttatacatgtaaccagggatcacaagaagaaccataaaagggaatccaacaatagccaatctccataataatgcaaatgc |
2431747 |
T |
|
| Q |
205 |
cactatgt |
212 |
Q |
| |
|
||||||| |
|
|
| T |
2431746 |
tactatgt |
2431739 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 100
Target Start/End: Original strand, 53664812 - 53664911
Alignment:
| Q |
1 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccagctttattgtactcttctctcattttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||||||||||||||||||||| |
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|
| T |
53664812 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagaaattgcttgttctgctattataccggctttattgtactcttctctcattttt |
53664911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 1 - 100
Target Start/End: Complemental strand, 33801821 - 33801722
Alignment:
| Q |
1 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccagctttattgtactcttctctcattttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |||||||| |||||||||||||||||| |
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| T |
33801821 |
tatggttttgctttctcctgcaaaggaataaacagttctaattgaagaaattgcttgttctgctattttaccggctttattttactcttctctcattttt |
33801722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 2 - 93
Target Start/End: Original strand, 17874389 - 17874480
Alignment:
| Q |
2 |
atggttttgctttctcctgcaaaggaataaacagttctaattgaagatattgcttgttctgctattgtaccagctttattgtactcttctct |
93 |
Q |
| |
|
|||| |||| ||||||| |||| ||||| ||||||||||| | |||||||| ||||||||| ||||||||||||| ||| ||||||||||| |
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| T |
17874389 |
atggatttgttttctcccacaaatgaatagacagttctaatggtagatattgtttgttctgcaattgtaccagcttgattatactcttctct |
17874480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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