View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_49 (Length: 219)
Name: NF1244_low_49
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_49 |
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Alignment Details
Target: chr7 (Bit Score: 167; Significance: 1e-89; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 1 - 202
Target Start/End: Complemental strand, 1364481 - 1364279
Alignment:
| Q |
1 |
accagaaggaacaagaaggg-gaaaggggatctccttgtcgcagacctctagctaaagtaaatttctcagtgggactaccattcaataaaacagccgcag |
99 |
Q |
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| T |
1364481 |
accagaaggaacaagaaaggtgaaaggggatctccctgtcgcagacctctagctaaagtgaatttctcagtgggactaccattcaataaaacagtcgcag |
1364382 |
T |
|
| Q |
100 |
tagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaactgaattgta |
199 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
1364381 |
tagcagtcccaacacattttttcattcatttcctccaaatagtcggaaacaacatcgtaaccataatatcatccaaatatttccaatcaactgaattgta |
1364282 |
T |
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| Q |
200 |
tgc |
202 |
Q |
| |
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||| |
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| T |
1364281 |
tgc |
1364279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 78 - 185
Target Start/End: Original strand, 17952062 - 17952169
Alignment:
| Q |
78 |
ccattcaataaaacagccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaat |
177 |
Q |
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||||||| || || ||||||| ||| || ||||||||||||||||| ||||||||||||| | ||||||||| ||| ||| | |||||| ||||||||| |
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| T |
17952062 |
ccattcactagaatagccgcaatagttgtgccaacacattctttcatccatttcctccaaagattcggaaacaccattttacctataacaccatccaaat |
17952161 |
T |
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| Q |
178 |
atttccaa |
185 |
Q |
| |
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|||||||| |
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| T |
17952162 |
atttccaa |
17952169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 105 - 202
Target Start/End: Original strand, 32808864 - 32808961
Alignment:
| Q |
105 |
gtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaactgaattgtatgc |
202 |
Q |
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| T |
32808864 |
gtcccaatacattcttttatccacttacgccaaagtgtcggaaaccccattttcaacataacatcatccaaatagctccaatcaattgagttgtatgc |
32808961 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 89 - 205
Target Start/End: Complemental strand, 15106505 - 15106389
Alignment:
| Q |
89 |
aacagccgcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatca |
188 |
Q |
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|||||||||| |||| || ||||||||||||||||| |||||||||||| | ||||||| ||| || ||| | |||||||||| ||||| ||||| |
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| T |
15106505 |
aacagccgcattagccgtgccaacacattctttcatccatttcctccaatgattcggaaatggcatattgcccacaccatcatccaagtattttcaatct |
15106406 |
T |
|
| Q |
189 |
actgaattgtatgcctt |
205 |
Q |
| |
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|| |||| ||||||||| |
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| T |
15106405 |
acagaatcgtatgcctt |
15106389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 20691226 - 20691162
Alignment:
| Q |
111 |
acacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaa |
175 |
Q |
| |
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|||||||||||||| ||||||||||||| |||| |||| |||| ||| ||||||| |||||||| |
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| T |
20691226 |
acacattctttcatccatttcctccaaagagtcagaaatgacattttacccataacgtcatccaa |
20691162 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 96 - 189
Target Start/End: Original strand, 21580459 - 21580552
Alignment:
| Q |
96 |
gcagtagcagtcccaacacattctttcattcatttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaa |
189 |
Q |
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|||| ||||||||||||||| || || || ||||| | ||| | |||||||||| |||||| | |||||| || |||||||| |||||||||| |
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| T |
21580459 |
gcagaagcagtcccaacacactccttaatccatttgcgccacaaagtcggaaaccccatcttcatcataacttcctccaaataattccaatcaa |
21580552 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 126 - 195
Target Start/End: Complemental strand, 23877346 - 23877277
Alignment:
| Q |
126 |
catttcctccaaatagtcggaaacaacatcttaaccataacatcatccaaatatttccaatcaactgaat |
195 |
Q |
| |
|
||||||||||||| ||| ||||| |||| || |||| |||||||||||||||||||| ||||| |||| |
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| T |
23877346 |
catttcctccaaagagtgggaaaagacattttctccatcacatcatccaaatatttccattcaacggaat |
23877277 |
T |
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