View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_5 (Length: 553)
Name: NF1244_low_5
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 112; Significance: 2e-56; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 423 - 546
Target Start/End: Original strand, 19788906 - 19789029
Alignment:
| Q |
423 |
caagcaactgaggataaccatccaatgttgatgtcccgtggccatgtcctctgtgatcagtctatcttgaaaatgtccatgaacagcacagaagcgttta |
522 |
Q |
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| T |
19788906 |
caagcaactgaggataaccatccaatgttgttgtcctgtggccatgtcctctgtgatcagtctatcttgaaaatgtccatgaacagcacagaagcgttta |
19789005 |
T |
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| Q |
523 |
agttcccatattgtccctatgata |
546 |
Q |
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| T |
19789006 |
agttcccatattgtccctttgata |
19789029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 299 - 424
Target Start/End: Original strand, 19788745 - 19788870
Alignment:
| Q |
299 |
tgactgtggccacagggatcctgtttttgccagctctccttaaatttatgaatatcatgtcaggaaagcagaaatggcagtcatgaaccttttaacagtg |
398 |
Q |
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|||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19788745 |
tgactgtggcagcaggggtcctgtttttgccagctctccttaaatttatgaatatcatgtcaggaaagcagaaatggcagtcatgagccttttaacagta |
19788844 |
T |
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| Q |
399 |
gtaattgagactgacaaagaattcca |
424 |
Q |
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| T |
19788845 |
gcaattgagactgacaaagaattcca |
19788870 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 93 - 291
Target Start/End: Original strand, 19788278 - 19788465
Alignment:
| Q |
93 |
tcaaattattgccaaccatttttatcaccgggactattttgatgcaagggacca-ttttttaagtgcagttggagagcctgagtctgccgcaa-tatgaa |
190 |
Q |
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| T |
19788278 |
tcaaattattgccaaccatttttttcaccaggaccattttgatgtaagggaccatttttttaagggcagttggagagcccgagtctgccgcaattatgaa |
19788377 |
T |
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| Q |
191 |
atatccattcgtagaaatgtataaaatacttcaagccatgcagaatcagaacctggaggacccagcccttgattgggctgccactaattctgacacttgc |
290 |
Q |
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| T |
19788378 |
atatccattcatagaaat------act--ttcaa---atg--gaatcagaacctggaggacccagccctcaattaggctgccgctaattctgacacttgc |
19788464 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 2e-32; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 423 - 546
Target Start/End: Original strand, 28173292 - 28173415
Alignment:
| Q |
423 |
caagcaactgaggataaccatccaatgttgatgtcccgtggccatgtcctctgtgatcagtctatcttgaaaatgtccatgaacagcacagaagcgttta |
522 |
Q |
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|||||||||||||| |||| |||||||||||||||| ||||||||||||||||| | |||||||||||||||||||||| ||| |||||| ||| |||| |
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| T |
28173292 |
caagcaactgaggagaaccctccaatgttgatgtcctgtggccatgtcctctgtaagcagtctatcttgaaaatgtccaagaatagcacaaaagtattta |
28173391 |
T |
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| Q |
523 |
agttcccatattgtccctatgata |
546 |
Q |
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||| ||| |||||||||| ||||| |
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| T |
28173392 |
agtgcccgtattgtccctttgata |
28173415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 78 - 285
Target Start/End: Original strand, 28172621 - 28172830
Alignment:
| Q |
78 |
ttgatatacacacttt----caaattattgccaaccatttttatcaccgggactattttgatgcaagggaccattttttaagtgcagttggagagcctga |
173 |
Q |
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|||||||||||||||| ||||| ||||||||||||||||||| || || | ||| |||| | ||||||||||| | |||||||| || |||||||| |
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| T |
28172621 |
ttgatatacacactttaaatcaaataattgccaaccatttttatcgccagggccttttcgatgtaggggaccattttcttagtgcagtcggtgagcctga |
28172720 |
T |
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| Q |
174 |
gtctgccgcaa-tatgaaatatccattcgtagaaatgtataaaatacttcaagccatgcagaatcagaacctggaggacccagcccttgattgggctgcc |
272 |
Q |
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||||| |||| |||||||| ||||||| | || |||||| ||||||| |||||||||||||||||||||||||| |||||||| | |||||||| |
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| T |
28172721 |
atctgctgcaagtatgaaatctccattcttggagatgtatcaaatactcgaagccatgcagaatcagaacctggag---ccagccctcaactgggctgcg |
28172817 |
T |
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| Q |
273 |
actaattctgaca |
285 |
Q |
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||||||||||||| |
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| T |
28172818 |
actaattctgaca |
28172830 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 65; Significance: 3e-28; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 7 - 71
Target Start/End: Original strand, 51364773 - 51364837
Alignment:
| Q |
7 |
cttccgtgcaatcctacaagctcccaccccaacgaacgccagtgccgctccaactgcaatattat |
71 |
Q |
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| T |
51364773 |
cttccgtgcaatcctacaagctcccaccccaacgaacgccagtgccgctccaactgcaatattat |
51364837 |
T |
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