View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_6 (Length: 547)
Name: NF1244_low_6
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 338; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 26 - 387
Target Start/End: Complemental strand, 36576815 - 36576455
Alignment:
| Q |
26 |
atgaaatctggtggaatacggccgtttgaaaatcgtccggtggggcggccaccatcgatgtcacgaccgtaaggtctaaaattgctctttagaaatgttg |
125 |
Q |
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| T |
36576815 |
atgaaatctggtggaatacggccgtttgaaaatcgtccggtggggcggccaccatcgatgtcacgaccgtaaggtctaaaattgctctttagaaatgttg |
36576716 |
T |
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| Q |
126 |
atatcatattgttgtttccagaatcaacagaggagtcaccaaacacaattactgctggtacataattttcattcttgcaagtcaccatgatcatttgagt |
225 |
Q |
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| T |
36576715 |
atatcatattgttgtttccagaatcaacagaggagtcaccaaacacaattactgctggtacataattttcattattgcaagtcaccatgatcatttgagt |
36576616 |
T |
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| Q |
226 |
tatcaatattagccatacgatgcatatgttccccataataataagattatgtaattatttggttttaattcttttggagaagttttatatatgtatcggg |
325 |
Q |
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| T |
36576615 |
tatcaatattagccatacgatgcatatgttccccataataataagattatgtaattatttggttttaattcttttggagaagttttatatatgtatcggg |
36576516 |
T |
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| Q |
326 |
ccagtccaataattttaataaataaatgagagcaaaagcaaaattttaatatatgtagcctc |
387 |
Q |
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| T |
36576515 |
tcagtccaataatttttaaaaataaatgagagcaaaagcaaaa-tttaatatatgtagcctc |
36576455 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 25 - 253
Target Start/End: Complemental strand, 36564187 - 36563959
Alignment:
| Q |
25 |
gatgaaatctggtggaatacggccgtttgaaaatcgtccggtggggcggccaccatcgatgtcacgaccgtaaggtctaaaattgctctttagaaatgtt |
124 |
Q |
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| T |
36564187 |
gatgaagtccggtggagtacgaccgttacaaaaccgtccggtagggcggccaccttcgaagtcacggccgtaaggtttaaaattgctcttgagaagtgta |
36564088 |
T |
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| Q |
125 |
gatatcatattgttgtttccagaatcaacagaggagtcaccaaacacaattactgctggtacataattttcattcttgcaagtcaccatgatcatttgag |
224 |
Q |
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| T |
36564087 |
gctatcctattattgtttccagaatccacagaagaatcaccaaagacaattactgctggtacatgatttttagtcttgcaagtcaccatgataatttggg |
36563988 |
T |
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| Q |
225 |
ttatcaatattagccatacgatgcatatg |
253 |
Q |
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| T |
36563987 |
ttatcaatattaaccatgctatgcatatg |
36563959 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 459 - 517
Target Start/End: Complemental strand, 36576380 - 36576322
Alignment:
| Q |
459 |
cgttggtatgtatgtggcttttaacgtgtctgagtatacatacaaatattttaatttct |
517 |
Q |
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| T |
36576380 |
cgttggtatgtatgtggcttttaacgtgtctgagtatacataaaaatattttaatttct |
36576322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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