View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1244_low_8 (Length: 541)
Name: NF1244_low_8
Description: NF1244
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1244_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 374; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 29 - 429
Target Start/End: Original strand, 21792878 - 21793279
Alignment:
| Q |
29 |
aaccttaaccaaataattgcttatttgaatggttacatatttgcgtatgcagtcaaggcaatagaagtggttgcactttgttgtttggaacatatcagaa |
128 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21792878 |
aaccttaaccaaataattgcttatttgaaaggttacatatttgcgtatgcagtcaaggcaatagaagtggttgcactttgttgtttggaacatatcagaa |
21792977 |
T |
|
| Q |
129 |
tctgttttcaaatcaaaacatataccgcatgtatgtttcatgggtagacatttttgtttttgcttgcagcaccgtaataagaaatttgccaataaagaag |
228 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21792978 |
tttgttttcaaatcaaaacatataccgcatgtatgtttcatgggtagacaattttgtttttgcttgcagcaccgtaataagaaatttgccaataaagaag |
21793077 |
T |
|
| Q |
229 |
gaacatgattggaagtttctgaggatttcaattttggagaagaagacatcacattcacagccatgataagaactacggatttgacctaattttt-agtgg |
327 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||| |
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| T |
21793078 |
gaacatgattggaagtttctgaggatttcaattttggagaagaagacatcacattcacagccatgagaagaactacggatttgacctaatttttgagtgg |
21793177 |
T |
|
| Q |
328 |
tgcgtttctttaatgcttttgtatagctcttgatattttcctcatttccacaatttttgcaaaatttgttttttgctgaaatttctcaaaacttgttata |
427 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
21793178 |
tgcgtttctttaatgcttttgtatagctcttgatattttcctcatttccacaatttttgcaaaatttgttttttgatgaaatttctcaaaacttgttata |
21793277 |
T |
|
| Q |
428 |
tt |
429 |
Q |
| |
|
|| |
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|
| T |
21793278 |
tt |
21793279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 29 - 427
Target Start/End: Original strand, 21788200 - 21788603
Alignment:
| Q |
29 |
aaccttaaccaaataattgcttatttgaatggttacatatttgcgtatgcagtcaaggcaatagaagtggttgcactttgttgtttggaacatatcagaa |
128 |
Q |
| |
|
|||||||||||||| |||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21788200 |
aaccttaaccaaattattgtttatttgaaaggttacatatttgcatatgcagtcaaggcaatagaagtggttgcactttgttgtttggaacatatcagaa |
21788299 |
T |
|
| Q |
129 |
tctgttttcaaatcaaaacatataccgcatgtatgtttcatgggtagacatttttgtttttgcttgcagcaccgtaataagaaatttgccaataaagaag |
228 |
Q |
| |
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| ||| |||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21788300 |
tttgtcttcaaatcaaaacatatatcgcatgtatgtttcatgggtagacagttttgtttttgcttgcagcaccgtaataagaaatttgccaataaagaag |
21788399 |
T |
|
| Q |
229 |
gaacatgattggaagtttctgaggatttcaattttggagaagaagacatcacattcacagccatgataagaactacggatttgacctaatttttagtggt |
328 |
Q |
| |
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|| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||| |
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| T |
21788400 |
gagcatgattggaagtttctgaggatttcgattttggagaagaagacatcacattcacagccatgagaagaactacggatttgacctaattttgagtggt |
21788499 |
T |
|
| Q |
329 |
gcgtttctttaatgcttt----tgtatagctcttgatattttcctcatttccaca---atttttgcaaaatttgttttttgctgaaatttctcaaaactt |
421 |
Q |
| |
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|||||||||||||||||| | |||||||||| ||||||||||| |||||| ||||| |||||||||||||||| || ||| ||||||| || |
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| T |
21788500 |
gcgtttctttaatgcttttttatttatagctcttaatattttcctc--ctccacattttttttttcaaaatttgttttttgatggaatatctcaaagttt |
21788597 |
T |
|
| Q |
422 |
gttata |
427 |
Q |
| |
|
|||||| |
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|
| T |
21788598 |
gttata |
21788603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 29 - 151
Target Start/End: Original strand, 21794897 - 21795019
Alignment:
| Q |
29 |
aaccttaaccaaataattgcttatttgaatggttacatatttgcgtatgcagtcaaggcaatagaagtggttgcactttgttgtttggaacatatcagaa |
128 |
Q |
| |
|
|||||||||||||| |||| ||||||||| |||||||||||||| |||||||||||||||||||| ||| ||||||||||| |||||||||||||||||| |
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| T |
21794897 |
aaccttaaccaaattattgtttatttgaaaggttacatatttgcatatgcagtcaaggcaatagaggtgtttgcactttgtcgtttggaacatatcagaa |
21794996 |
T |
|
| Q |
129 |
tctgttttcaaatcaaaacatat |
151 |
Q |
| |
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| ||||||||| ||||||||||| |
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|
| T |
21794997 |
tatgttttcaattcaaaacatat |
21795019 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 116 - 154
Target Start/End: Original strand, 24976878 - 24976916
Alignment:
| Q |
116 |
gaacatatcagaatctgttttcaaatcaaaacatatacc |
154 |
Q |
| |
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||||||||| |||||||||||||||||||| |||||||| |
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| T |
24976878 |
gaacatatctgaatctgttttcaaatcaaagcatatacc |
24976916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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