View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12450_high_4 (Length: 395)
Name: NF12450_high_4
Description: NF12450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12450_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 19 - 385
Target Start/End: Original strand, 36491342 - 36491708
Alignment:
| Q |
19 |
atcagaatagttgcaagtaaaggtctgacatgaataacaacctctttattcaggagtataatctccaagcatctcccaccactccgcaagatatgtagtc |
118 |
Q |
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| T |
36491342 |
atcagaatagttgcaagtaaaggtctgacatgaataacaacctcttcattcaggagtataatctccaagcatctcccaccactccgcaagatatgtagtc |
36491441 |
T |
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| Q |
119 |
atcctagctttctttgcatactttgatttaaagagagtccctttacgaaaaatgaatgccaacgagttttctatcaatcttgggcctaagtgtcgaatca |
218 |
Q |
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| T |
36491442 |
atcctagctttctttgcatactttgatttaaagagagtccctttacgaaaaatgaatgccaacgagttttctatcaatcttgggcctaagtgtcgaatca |
36491541 |
T |
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| Q |
219 |
tttatcaaccttgtcatagaactgtataacccatgtttcacctcaacatcatcaactctaaaattagcttcaaaatggtgttggggattatgataatatg |
318 |
Q |
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| T |
36491542 |
tttatcaaccttgtcatagaactgtataacccatgtttcacctcaacatcatcaactctaaaattagcttcaaaatggtgttggggattatgataatatg |
36491641 |
T |
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| Q |
319 |
ccgatgcatgccagggtctatgaagttgattatttcactgctcatcaataattttctacacaggttc |
385 |
Q |
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| T |
36491642 |
ccgatgcatgccagggtctatgaagttgattatttcactgctcatcaataattttctacacaggttc |
36491708 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 241 - 297
Target Start/End: Complemental strand, 36492487 - 36492431
Alignment:
| Q |
241 |
tgtataacccatgtttcacctcaacatcatcaactctaaaattagcttcaaaatggt |
297 |
Q |
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| T |
36492487 |
tgtataatccatttgtcacctcaatatcataaactccaaaaatagcttcaaaatggt |
36492431 |
T |
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