View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12450_high_5 (Length: 370)
Name: NF12450_high_5
Description: NF12450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12450_high_5 |
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Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 20 - 355
Target Start/End: Complemental strand, 43828987 - 43828652
Alignment:
| Q |
20 |
actgatacaatacggtgactctttcttggctgatagtgtttcttcaactgcaacaagttaattaattcaacagaaacatgttacttgcatgccaagaaaa |
119 |
Q |
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| T |
43828987 |
actgatacaatacggtgactctttcttggctgatagtgtttcttcaactgcaacaagttaattaattcaacagaaacatgttacttgcatgccaagaaaa |
43828888 |
T |
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| Q |
120 |
atattacttgaattaatcaatgtagatcttagtacttgatacattttcaatgtcaatatttaatttaatgttaagaatgatcttacctcaccggttgcga |
219 |
Q |
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| T |
43828887 |
atattacttgaattaatcaatgtagatcttagtacttgatacattttcaatgtcaatatttaatttaatgttaagaatgatcttacctcaccggttgcga |
43828788 |
T |
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| Q |
220 |
tactgatatctgagtaaacaagattgatcggtgaagtgtggacatggatgccaaaaaatgtagcagggttgtatatgttcatgtgcaaagtgctattaat |
319 |
Q |
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| T |
43828787 |
tactgatatctgagtaaacaagattgatcggtgaagtgtggacatggatgccaaaaaatgtagcagggttgtatatgttcatgtgcaaagtgctattaat |
43828688 |
T |
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| Q |
320 |
tgtcagaatttttgttgggactcctgtgtggtctgt |
355 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
43828687 |
tgtcagaatttttgttgggactcctgtgtggtctgt |
43828652 |
T |
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