View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12450_low_10 (Length: 317)

Name: NF12450_low_10
Description: NF12450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12450_low_10
NF12450_low_10
[»] chr7 (2 HSPs)
chr7 (1-296)||(16771755-16772050)
chr7 (107-185)||(27151998-27152076)
[»] chr3 (8 HSPs)
chr3 (106-195)||(15478570-15478659)
chr3 (166-267)||(24729710-24729811)
chr3 (99-198)||(3661504-3661602)
chr3 (110-203)||(38649063-38649156)
chr3 (110-197)||(26434585-26434672)
chr3 (106-197)||(23422570-23422661)
chr3 (110-161)||(53610226-53610277)
chr3 (110-183)||(11895321-11895394)
[»] chr8 (3 HSPs)
chr8 (99-198)||(26710599-26710697)
chr8 (110-183)||(23134486-23134559)
chr8 (110-161)||(38346643-38346694)
[»] chr2 (4 HSPs)
chr2 (99-198)||(39010690-39010788)
chr2 (110-191)||(42405113-42405194)
chr2 (110-197)||(14655567-14655654)
chr2 (110-194)||(35137106-35137190)
[»] chr6 (2 HSPs)
chr6 (92-203)||(24895723-24895832)
chr6 (99-176)||(13028944-13029020)
[»] chr1 (3 HSPs)
chr1 (134-194)||(5194945-5195005)
chr1 (110-194)||(50238449-50238533)
chr1 (110-183)||(20283022-20283095)
[»] scaffold0214 (1 HSPs)
scaffold0214 (112-194)||(7136-7218)
[»] chr4 (2 HSPs)
chr4 (112-198)||(7589518-7589604)
chr4 (112-194)||(46786368-46786450)
[»] chr5 (2 HSPs)
chr5 (110-185)||(7811997-7812072)
chr5 (110-158)||(23943234-23943282)


Alignment Details
Target: chr7 (Bit Score: 255; Significance: 1e-142; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 296
Target Start/End: Complemental strand, 16772050 - 16771755
Alignment:
Q  1 caagtgaatttaacagcaaatgaaggacaccatgaagcctccaatgactgcaaggaggatatggtcacctagnnnnnnncctgacatacattcaatcttt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||       |||||||||||||||||||||    
T  16772050 caagtgaatttaacagcaaatgaaggacaccatgaagcctccaatgattgcaaggaggatatggtcacctagtttttttcctgacatacattcaatcttt 16771951  T
Q  101 cattatttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaagatttaat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||    
T  16771950 cattatttattatggaagctctcttagatacttcaatcctctcttggaatatcataggggcacacaataataatgcaagaagacagctgaaagatttaat 16771851  T
Q  201 aaggaagtatagtcctacttactttgccatattcgaaactcacactcctttttctaacctttcctctttttggattaataatggttacacccctat 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  16771850 aaggaagtatagtcctacttactttgccatattcgaaactcacactccttttgctaacctttcctctttttggattaacaatggttacacccctat 16771755  T

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Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 107 - 185
Target Start/End: Original strand, 27151998 - 27152076
Alignment:
Q  107 ttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagaca 185  Q
    |||||||||||||  | || |||||||||| ||||||||||||| ||||||||||| |||| |||||||| ||||||||    
T  27151998 ttattatggaagccttatttgatacttcaaacctctcttggaatgtcagaggggcaaacaacaataatgccagaagaca 27152076  T

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Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 106 - 195
Target Start/End: Complemental strand, 15478659 - 15478570
Alignment:
Q  106 tttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaagat 195  Q
    ||||||||||| |||||  |||||| |||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||||||||||||    
T  15478659 tttattatggatgctctgatagatatttcaatcctctcttggaacatcagaggggcatacaataacaatgctagaagacaactgaaagat 15478570  T

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Target: chr3; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 166 - 267
Target Start/End: Original strand, 24729710 - 24729811
Alignment:
Q  166 aataataatgcaagaagacaactgaaagatttaataaggaagtatagtcctacttactttgccatattcgaaactcacactcctttttctaacctttcct 265  Q
    ||||||||||||||| ||||||| ||||||||||||||||||||||  || |  ||||| ||||| || || ||||||||||||||| ||||||||||||    
T  24729710 aataataatgcaagacgacaactaaaagatttaataaggaagtataaccccaaatacttagccatttttgagactcacactccttttgctaacctttcct 24729809  T
Q  266 ct 267  Q
    ||    
T  24729810 ct 24729811  T

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Target: chr3; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 3661602 - 3661504
Alignment:
Q  99 ttcattatttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaagattta 198  Q
    |||||||||| |||||||||||||  |||||  ||||||||||||||||||||||||||||||||| || ||||||||  ||||||| || |||||||||    
T  3661602 ttcattattt-ttatggaagctctactagatgtttcaatcctctcttggaatatcagaggggcacaaaacaataatgctcgaagacagcttaaagattta 3661504  T

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Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 110 - 203
Target Start/End: Complemental strand, 38649156 - 38649063
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaagatttaataag 203  Q
    |||||||||| || || ||||| |||||||||||||| |||||||||||||| |||||||| ||||| |||||||| ||||| ||||| |||||    
T  38649156 ttatggaagcccttttcgatacatcaatcctctcttgaaatatcagaggggctcacaataacaatgccagaagacatctgaaggatttgataag 38649063  T

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Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 26434672 - 26434585
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaagattt 197  Q
    |||||||||| ||| |||||| | | ||||||||||||||||| |||||||| |||||||| ||||| |||||| | || ||||||||    
T  26434672 ttatggaagcactcctagatattaccatcctctcttggaatattagaggggctcacaataacaatgctagaagaaaccttaaagattt 26434585  T

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Target: chr3; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 106 - 197
Target Start/End: Original strand, 23422570 - 23422661
Alignment:
Q  106 tttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaagattt 197  Q
    ||||| ||||||||||| || |||||| |  ||||||||||||  || |||||||||| || ||||||| ||||||||||  ||||||||||    
T  23422570 tttatcatggaagctctttttgatactactttcctctcttggaccataagaggggcactcagtaataattcaagaagacacttgaaagattt 23422661  T

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Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 161
Target Start/End: Complemental strand, 53610277 - 53610226
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggc 161  Q
    ||||||||||| ||  |||||||||||| |||||||||||||||||||||||    
T  53610277 ttatggaagctttcaaagatacttcaattctctcttggaatatcagaggggc 53610226  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 11895321 - 11895394
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 183  Q
    |||||||||||||| | ||||   | ||||||||||||||||| |||||||| || ||||| |||| |||||||    
T  11895321 ttatggaagctctccttgatatcaccatcctctcttggaatattagaggggctcaaaataacaatggaagaaga 11895394  T

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Target: chr8 (Bit Score: 52; Significance: 8e-21; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 99 - 198
Target Start/End: Complemental strand, 26710697 - 26710599
Alignment:
Q  99 ttcattatttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaagattta 198  Q
    |||||||||| |||||||||||||  | ||||||||||||| |||||||||||| |||||||| || || |||||||||||||| || ||||||||||||    
T  26710697 ttcattattt-ttatggaagctcttctcgatacttcaatccactcttggaatattagaggggctcaaaacaataatgcaagaaggcagctgaaagattta 26710599  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 110 - 183
Target Start/End: Complemental strand, 23134559 - 23134486
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 183  Q
    |||||||||||||| | ||||   | ||||||||||||||||| |||||||| || ||||| ||||||||||||    
T  23134559 ttatggaagctctccttgatatcaccatcctctcttggaatattagaggggctcaaaataacaatgcaagaaga 23134486  T

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Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 110 - 161
Target Start/End: Original strand, 38346643 - 38346694
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggc 161  Q
    |||||||||||||| || ||||  ||||||||||||||||||| ||||||||    
T  38346643 ttatggaagctctcctaaatacaacaatcctctcttggaatattagaggggc 38346694  T

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Target: chr2 (Bit Score: 52; Significance: 8e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 99 - 198
Target Start/End: Original strand, 39010690 - 39010788
Alignment:
Q  99 ttcattatttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaagattta 198  Q
    |||||||||| |||||||||||||  |||||  ||||||||||||||||||||||||||||||||| || ||||||||  ||||||| || |||||||||    
T  39010690 ttcattattt-ttatggaagctctactagatgtttcaatcctctcttggaatatcagaggggcacaaaacaataatgctcgaagacagcttaaagattta 39010788  T

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Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 110 - 191
Target Start/End: Complemental strand, 42405194 - 42405113
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaa 191  Q
    ||||||| |||||  |||||| |||||||||||||||||| |||||||||||| ||||||| ||||| ||||||||| ||||    
T  42405194 ttatggatgctctgatagatatttcaatcctctcttggaacatcagaggggcatacaataacaatgctagaagacaattgaa 42405113  T

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Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 110 - 197
Target Start/End: Complemental strand, 14655654 - 14655567
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaagattt 197  Q
    |||||||||||||| | |||| | | ||||||||||||||||| |||||||| |||||||| |||||||||||| | || ||||||||    
T  14655654 ttatggaagctctccttgatattaccatcctctcttggaatattagaggggctcacaataacaatgcaagaagaaaccttaaagattt 14655567  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 35137190 - 35137106
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaaga 194  Q
    |||||||||||||  ||||||  || ||||||||||||||||| |||||||| |  |||| |||||||| |||||| ||||||||    
T  35137190 ttatggaagctcttctagatatctctatcctctcttggaatattagaggggctctaaatattaatgcaaaaagacatctgaaaga 35137106  T

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Target: chr6 (Bit Score: 49; Significance: 5e-19; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 92 - 203
Target Start/End: Complemental strand, 24895832 - 24895723
Alignment:
Q  92 tcaatctttcattatttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaa 191  Q
    ||||||||||  ||||||| ||||||||||| || |||||| || ||||||||||||| || |||||||||| || ||||||| ||||||||||  ||||    
T  24895832 tcaatctttc--tatttatcatggaagctctttttgatactacattcctctcttggaacataagaggggcactcagtaataattcaagaagacacttgaa 24895735  T
Q  192 agatttaataag 203  Q
    |||||| |||||    
T  24895734 agatttgataag 24895723  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 99 - 176
Target Start/End: Complemental strand, 13029020 - 13028944
Alignment:
Q  99 ttcattatttattatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgc 176  Q
    |||||||||| |||||||||| ||  |||||  ||||||||||||||||||||||||||||||||| || ||||||||    
T  13029020 ttcattattt-ttatggaagcacttctagatgtttcaatcctctcttggaatatcagaggggcacaaaacaataatgc 13028944  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 134 - 194
Target Start/End: Complemental strand, 5195005 - 5194945
Alignment:
Q  134 caatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaaga 194  Q
    |||||||||||||||||||||||||||| |||||||| || || |||||||| ||||||||    
T  5195005 caatcctctcttggaatatcagaggggctcacaataacaaagctagaagacacctgaaaga 5194945  T

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Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 110 - 194
Target Start/End: Complemental strand, 50238533 - 50238449
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaaga 194  Q
    ||||||| |||||| |||||||||| |||||||||||||| ||||||||||| || ||||| ||| | ||||||||  |||||||    
T  50238533 ttatggatgctctcctagatacttctatcctctcttggaacatcagaggggctcataataacaattccagaagacatatgaaaga 50238449  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 110 - 183
Target Start/End: Original strand, 20283022 - 20283095
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaaga 183  Q
    |||||||||||||| | ||||   | ||||||||||||||||| |||||||| || ||||| |||| |||||||    
T  20283022 ttatggaagctctccttgatatcaccatcctctcttggaatattagaggggctcaaaataacaatggaagaaga 20283095  T

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Target: scaffold0214 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: scaffold0214
Description:

Target: scaffold0214; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 194
Target Start/End: Original strand, 7136 - 7218
Alignment:
Q  112 atggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaaga 194  Q
    |||||||||||| | || |  ||||||||||||||||||||||||||||| ||||||| |||  | |||||||| ||||||||    
T  7136 atggaagctctccttgacatctcaatcctctcttggaatatcagaggggctcacaatagtaactctagaagacatctgaaaga 7218  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 112 - 198
Target Start/End: Complemental strand, 7589604 - 7589518
Alignment:
Q  112 atggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaagattta 198  Q
    |||||||||||  |  ||| |||| |||||||||||||||| |||||||| || || |||||||||||||| || ||||||||||||    
T  7589604 atggaagctctactcaatatttcactcctctcttggaatattagaggggctcaaaacaataatgcaagaaggcagctgaaagattta 7589518  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 194
Target Start/End: Complemental strand, 46786450 - 46786368
Alignment:
Q  112 atggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagacaactgaaaga 194  Q
    |||||||| ||| |||||||| | |||||||||||||| || |||||||| || || | ||| || | |||||||||||||||    
T  46786450 atggaagcactcctagatactactatcctctcttggaacattagaggggcccaaaacagtaaagctaaaagacaactgaaaga 46786368  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 110 - 185
Target Start/End: Original strand, 7811997 - 7812072
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagaggggcacacaataataatgcaagaagaca 185  Q
    |||||||||| ||| |||||| ||| |||||||||||||| || |||||||| || ||| ||||||| ||||||||    
T  7811997 ttatggaagcgctcctagatatttccatcctctcttggaacattagaggggctcaaaatcataatgctagaagaca 7812072  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 23943234 - 23943282
Alignment:
Q  110 ttatggaagctctcttagatacttcaatcctctcttggaatatcagagg 158  Q
    ||||||||||| ||  |||||||||||| ||||| ||||||||||||||    
T  23943234 ttatggaagctttcaaagatacttcaattctctcctggaatatcagagg 23943282  T

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