View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12450_low_11 (Length: 315)
Name: NF12450_low_11
Description: NF12450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12450_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 45637567 - 45637861
Alignment:
| Q |
1 |
ctgcagttgcaatcagcagcagtggtatgtcagcagaagctaatggcggtaaacctttacgtgtggcagcgaataacaacaacaacaactctggtatgaa |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
45637567 |
ctgcagttgcaatcagcagcagtggtatgtcagcagaagctaatggcagcagacctttacgtgcggcagcgaataacaacaacaacaactctggtatgaa |
45637666 |
T |
|
| Q |
101 |
cagtcgtagtgtgcagccaagtgcagcagctgtgcgtgctgtttatggttcatcctctttgtcatggcagaggcctaaccaaggtagattcaagtgtaac |
200 |
Q |
| |
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|||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45637667 |
cagtcgtaatgtgc----------agcagctgtgcgtgttgtttatggttcatcctctttgtcatggcagaggcctaaccaaggtagattcaagtgtaac |
45637756 |
T |
|
| Q |
201 |
atcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatctgcgatgaagggggagttttcgtgcttgcaaaggctattccttcac |
300 |
Q |
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|| |||| ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |
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| T |
45637757 |
attgatgtcgcattttcaaatgagctgaacatcacaggtttgggcatgtgcatccgcgatgaagggggagttttcgtgcttgcaaaggctattcctttac |
45637856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 8274180 - 8274484
Alignment:
| Q |
1 |
ctgcagttgcaatcagcagcagtggtatgtcagcagaagctaatggcggtaaacctttacgtgtggcagcgaataacaacaacaacaactctggtatgaa |
100 |
Q |
| |
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||||| |||||||||||||||| ||||||||||||| |||| ||||| | | |||| ||||| |||||||||||||||||||| ||||| || |||||| |
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| T |
8274180 |
ctgcaattgcaatcagcagcagcggtatgtcagcagcagctgatggcagcagtccttcacgtgcggcagcgaataacaacaacaccaactgtgatatgaa |
8274279 |
T |
|
| Q |
101 |
cagtcgtagtgtgcagccaagtgcagcagctgtgcgtgctgtttatggttcatcctctttgtcatggcagaggcctaaccaaggtagattcaagtgtaac |
200 |
Q |
| |
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||| |||||||||||||||||||||||||||||||||||||||| |||||| |||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
8274280 |
cagacgtagtgtgcagccaagtgcagcagctgtgcgtgctgtttctggttcgtccttcttgacatggcagaggcctaaccaaggtagattcaagtgtaac |
8274379 |
T |
|
| Q |
201 |
atcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatctgcgatgaagggggagttttcgtgcttgcaaaggctattccttcac |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||| || |
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| T |
8274380 |
atcgatgccgcattttctaatgagctgaacatcacaggtttgggcatgtgcatccacgatgaagggggtgttttcgtgcttgcaaaggctattcctttac |
8274479 |
T |
|
| Q |
301 |
aggtt |
305 |
Q |
| |
|
||||| |
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|
| T |
8274480 |
aggtt |
8274484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 182 - 295
Target Start/End: Original strand, 22785547 - 22785660
Alignment:
| Q |
182 |
aggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatctgcgatgaagggggagttttcgtgctt |
281 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||| ||| | | ||| ||| | |||| |||||||| ||||||||||||||||||||||| | |||| |
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| T |
22785547 |
aggtagattcaagtgcaacattgatgccgcttttttaaacaaacagaatgtcatatgtttgggcatgtgtatctgcgatgaagggggagtttttgggctt |
22785646 |
T |
|
| Q |
282 |
gcaaaggctattcc |
295 |
Q |
| |
|
|| |||| |||||| |
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| T |
22785647 |
gctaaggttattcc |
22785660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 96; Significance: 4e-47; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 66 - 305
Target Start/End: Original strand, 41343783 - 41344022
Alignment:
| Q |
66 |
gcagcgaataacaacaacaacaactctggtatgaacagtcgtagtgtgcagccaagtgcagcagctgtgcgtgctgtttatggttcatcctctttgtcat |
165 |
Q |
| |
|
||||||||||||||||||| ||| | || || ||||| ||||||| || |||| |||||||| ||||||| |||| |||||| ||| ||| | | |
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| T |
41343783 |
gcagcgaataacaacaacaccaattatgatacgaacatgcgtagtgcgctgccagatgcagcagttgtgcgtattgttcttggttcgtccgtcttgactt |
41343882 |
T |
|
| Q |
166 |
ggcagaggcctaaccaaggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatctgcgatgaagg |
265 |
Q |
| |
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||||||||||||||||||| ||||| |||||||||||||||||||| ||||| || ||| |||| ||||||||||| || ||||||||| |||||||||| |
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| T |
41343883 |
ggcagaggcctaaccaaggaagatttaagtgtaacatcgatgccgctttttctaaagagttgaatatcacaggtttgggtatgtgcatccgcgatgaagg |
41343982 |
T |
|
| Q |
266 |
gggagttttcgtgcttgcaaaggctattccttcacaggtt |
305 |
Q |
| |
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||| || |||||||| |||||||||||||||| ||||||| |
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| T |
41343983 |
gggtgtcttcgtgctcgcaaaggctattcctttacaggtt |
41344022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 155 - 295
Target Start/End: Complemental strand, 11152634 - 11152494
Alignment:
| Q |
155 |
ctctttgtcatggcagaggcctaaccaaggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatc |
254 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||| ||||||||||| |||||||| ||||||| |||||| |||| ||||||||||| |||||||| ||| |
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| T |
11152634 |
ctctttgtcatggcagaggcctcaccaaggtagagtcaagtgtaacgtcgatgccacattttcgaatgagttgaatatcacaggtttgggcatgtgtatc |
11152535 |
T |
|
| Q |
255 |
tgcgatgaagggggagttttcgtgcttgcaaaggctattcc |
295 |
Q |
| |
|
|||||||| ||||| |||| |||||||| ||||||||||| |
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| T |
11152534 |
cgcgatgaaaggggactttttgtgcttgctaaggctattcc |
11152494 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 155 - 295
Target Start/End: Original strand, 8859288 - 8859428
Alignment:
| Q |
155 |
ctctttgtcatggcagaggcctaaccaaggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatc |
254 |
Q |
| |
|
||||| |||||||||||||||| |||||| |||| | |||||||| | |||||| ||||||| |||||| |||| ||||||||||| |||||||| ||| |
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| T |
8859288 |
ctcttcgtcatggcagaggcctcaccaagatagagttaagtgtaatgttgatgccacattttcgaatgagttgaatatcacaggtttgggcatgtgtatc |
8859387 |
T |
|
| Q |
255 |
tgcgatgaagggggagttttcgtgcttgcaaaggctattcc |
295 |
Q |
| |
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|||||||| ||||| |||| |||||||| ||||||||||| |
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| T |
8859388 |
cgcgatgaaaggggactttttgtgcttgctaaggctattcc |
8859428 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 268
Target Start/End: Complemental strand, 18684976 - 18684890
Alignment:
| Q |
182 |
aggtagattcaagtgtaacatcgatgccgcattttcaaatgagctgaacatcacaggtttaggcatgtgcatctgcgatgaaggggg |
268 |
Q |
| |
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||||||||||||||| ||||| | |||||| |||| ||||| ||| ||||| ||||| |||||||| ||| ||||||||||||| |
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| T |
18684976 |
aggtagattcaagtgaaacattggtgccgcttttttgaatgaatggaatatcaccggtttgggcatgtgtatccgcgatgaaggggg |
18684890 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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