View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12450_low_2 (Length: 595)
Name: NF12450_low_2
Description: NF12450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12450_low_2 |
 | |
|
| [»] chr1 (2 HSPs) |
| |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 433; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 595
Target Start/End: Original strand, 4774958 - 4775532
Alignment:
| Q |
18 |
aaataaacactaatttagcaatgactgattttcttaaaaggctnnnnnnntgatatattaacaaatcaggatcaactgtctcagcataggtgtacgaaac |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
4774958 |
aaataaacactaatttagcaatgactgattttcttaaaaggctaaaaaaatggtatattaacaaatcaggatcaactgtttcagcataggtgtacgaaac |
4775057 |
T |
|
| Q |
118 |
caacccatcaagattacagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcaccaagaccctccttttatataaattgtctcga |
217 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | |
|
|
| T |
4775058 |
caacccatcaagattagagaaacatgcaactggtcaagttcactacaaaaacagaaaaacaaacagcactaagaccctccttttaaataaattgtctcta |
4775157 |
T |
|
| Q |
218 |
gcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaacatgaggagtagagttctgaaacacct |
317 |
Q |
| |
|
||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775158 |
gcaggaacatgattcaaactcaaacgtaaagcaaaaattgagactttgagaagtactactttaagccaaagaacatgaggagtagagttctgaaacacct |
4775257 |
T |
|
| Q |
318 |
ttgttactttattacaagcattgttaactatgtaactatgagatgtgggtaaatgccaaatccatctatcctctgtagccacctgcaatgt--------- |
408 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4775258 |
ttgttactttattacaagcattgttaactatgtaactatgagatgtgggtaaatgccaaatccatctatcctctgtagccacctgcgatgtataggataa |
4775357 |
T |
|
| Q |
409 |
atacgttctgttatattcaagtcaatagaa---aatgttaacatttgtgtggccatatatacatataatacaatgatgaattatgctaaaatcatggaac |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4775358 |
atacgttctgttatattcaagtcaatagaaaataatgttaacatttgtgtggccatatatacatataatacaatgatgaattatgctaaaatcatggaac |
4775457 |
T |
|
| Q |
506 |
agtcaactatactaattggctatttactatgggatatgatttccatttacagatattattacaaccattaatctttgatttggtcaatgc |
595 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
4775458 |
agtcaacta---------------tactatgggatatgatttccatttacagatattattacaaccattattctttgatttggtcaatgc |
4775532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 188 - 390
Target Start/End: Original strand, 29552984 - 29553195
Alignment:
| Q |
188 |
aagaccctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaa |
287 |
Q |
| |
|
||||||||||||||| ||||||||| | || ||||| | |||||| || |||||| ||||||||||| |||||||||||| | || | ||||||||||| |
|
|
| T |
29552984 |
aagaccctccttttaaataaattgtttttagtaggaatacgattcagacccaatcgccaagcaaaaatagagactttgagaggaaccattttaagccaaa |
29553083 |
T |
|
| Q |
288 |
gaac---------atgaggagtagagttctgaaacacctttgttactttattacaagcattgttaactatgtaactatgagatgtgggtaaatgccaaat |
378 |
Q |
| |
|
|||| |||||||| |||||||| || ||| | | ||||||| | |||||| ||||| ||||||| ||||| | | ||||||||||||| |
|
|
| T |
29553084 |
gaacctgagaattctgaggagtggagttctgcaaaccctccatcaatttattatacgcattgctaactgtgtaactctgagaagagtgtaaatgccaaat |
29553183 |
T |
|
| Q |
379 |
ccatctatcctc |
390 |
Q |
| |
|
|||||||||||| |
|
|
| T |
29553184 |
ccatctatcctc |
29553195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 94; Significance: 1e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 446 - 595
Target Start/End: Original strand, 448506 - 448655
Alignment:
| Q |
446 |
acatttgtgtggccatatatacatataatacaatgatgaattatgctaaaatcatggaacagtcaactatactaattggctatttactatgggatatgat |
545 |
Q |
| |
|
|||||||||| ||||||||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
448506 |
acatttgtgtagccatatatacatggaatacaatgatgaatattgctcaaatcatggaacagtcaactatactaattggctagttactataagatatgat |
448605 |
T |
|
| Q |
546 |
ttccatttacagatattattacaaccattaatctttgatttggtcaatgc |
595 |
Q |
| |
|
|||||||||| |||||||||||| |||| | | ||||||||||||||||| |
|
|
| T |
448606 |
ttccatttactgatattattacacccatcattatttgatttggtcaatgc |
448655 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 191 - 291
Target Start/End: Complemental strand, 38397807 - 38397707
Alignment:
| Q |
191 |
accctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaa |
290 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| | ||||||||| ||| || ||||| |||||||| ||||||||| || |||||||||||||||| |
|
|
| T |
38397807 |
accctccttttaaataaattgtcttttgtaggaatacgattcaaacccaaacgccaagcgaaaattgatactttgagagaaaccactttaagccaaagaa |
38397708 |
T |
|
| Q |
291 |
c |
291 |
Q |
| |
|
| |
|
|
| T |
38397707 |
c |
38397707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 191 - 291
Target Start/End: Complemental strand, 17173714 - 17173614
Alignment:
| Q |
191 |
accctccttttatataaattgtctcgagcaggaacatgattcaaactcaatcgtcaagcaaaaattgagactttgagaagtactactttaagccaaagaa |
290 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||| | ||||||||| ||| || |||||||| ||||| ||||||||| | || |||||||||||||||| |
|
|
| T |
17173714 |
accctccttttaaataaattgtcttttgtaggaatacgattcaaacccaaacgccaagcaaatattgatactttgagatgaaccactttaagccaaagaa |
17173615 |
T |
|
| Q |
291 |
c |
291 |
Q |
| |
|
| |
|
|
| T |
17173614 |
c |
17173614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 414 - 472
Target Start/End: Original strand, 43060749 - 43060807
Alignment:
| Q |
414 |
ttctgttatattcaagtcaatagaaaatgttaacatttgtgtggccatatatacatata |
472 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||| ||||||| ||||| |
|
|
| T |
43060749 |
ttctgttgtattcaagtcaatagaaaatattaacatttgtgtggtaatatatatatata |
43060807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 541 - 595
Target Start/End: Original strand, 43060836 - 43060890
Alignment:
| Q |
541 |
atgatttccatttacagatattattacaaccattaatctttgatttggtcaatgc |
595 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||| | ||||||||||| ||||| |
|
|
| T |
43060836 |
atgatttccatttactgatatcattacaaccattgttatttgatttggtaaatgc |
43060890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University