View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12450_low_4 (Length: 466)

Name: NF12450_low_4
Description: NF12450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12450_low_4
NF12450_low_4
[»] chr2 (17 HSPs)
chr2 (14-454)||(12634604-12635048)
chr2 (232-425)||(17626881-17627074)
chr2 (232-425)||(17671953-17672146)
chr2 (258-425)||(17657967-17658134)
chr2 (233-284)||(45714976-45715027)
chr2 (353-449)||(23257884-23257980)
chr2 (234-284)||(12127722-12127772)
chr2 (234-284)||(29711000-29711050)
chr2 (234-284)||(3586345-3586395)
chr2 (252-325)||(17560763-17560837)
chr2 (234-284)||(20120329-20120379)
chr2 (234-271)||(28426194-28426231)
chr2 (234-275)||(40800106-40800147)
chr2 (234-278)||(12168954-12168998)
chr2 (240-284)||(27846578-27846622)
chr2 (291-382)||(27933704-27933796)
chr2 (246-310)||(31013553-31013617)
[»] scaffold0022 (1 HSPs)
scaffold0022 (234-393)||(69174-69333)
[»] chr1 (15 HSPs)
chr1 (233-448)||(8018930-8019144)
chr1 (234-284)||(26977722-26977772)
chr1 (242-283)||(33101567-33101608)
chr1 (236-296)||(30732501-30732561)
chr1 (234-284)||(4601546-4601596)
chr1 (233-275)||(5459776-5459818)
chr1 (237-314)||(1485362-1485439)
chr1 (236-284)||(3590811-3590859)
chr1 (298-377)||(32201540-32201620)
chr1 (233-284)||(14255089-14255140)
chr1 (238-284)||(2141003-2141049)
chr1 (234-284)||(22414757-22414807)
chr1 (234-284)||(25408078-25408128)
chr1 (252-284)||(16050394-16050426)
chr1 (236-284)||(52565564-52565612)
[»] chr5 (12 HSPs)
chr5 (234-384)||(7449774-7449925)
chr5 (234-383)||(4477180-4477330)
chr5 (235-380)||(30827053-30827198)
chr5 (238-384)||(8938898-8939045)
chr5 (234-284)||(26348138-26348188)
chr5 (234-384)||(16621190-16621339)
chr5 (236-284)||(26163619-26163667)
chr5 (234-277)||(25537387-25537430)
chr5 (313-384)||(29278994-29279066)
chr5 (233-280)||(18803899-18803946)
chr5 (235-269)||(22865744-22865778)
chr5 (232-272)||(24546327-24546367)
[»] chr7 (19 HSPs)
chr7 (234-383)||(2226625-2226775)
chr7 (234-277)||(7486527-7486570)
chr7 (246-384)||(9573384-9573523)
chr7 (234-277)||(12644767-12644810)
chr7 (234-269)||(18773963-18773998)
chr7 (234-284)||(5925534-5925584)
chr7 (234-284)||(9135420-9135470)
chr7 (346-384)||(12004737-12004775)
chr7 (234-296)||(26562899-26562961)
chr7 (234-284)||(26762970-26763020)
chr7 (234-270)||(16987165-16987201)
chr7 (234-309)||(12163721-12163796)
chr7 (242-285)||(16363424-16363467)
chr7 (234-284)||(9867998-9868048)
chr7 (234-284)||(21161224-21161273)
chr7 (235-277)||(25173883-25173925)
chr7 (234-284)||(29373428-29373478)
chr7 (236-309)||(34889905-34889977)
chr7 (234-270)||(12265165-12265201)
[»] chr6 (20 HSPs)
chr6 (260-384)||(22692101-22692226)
chr6 (295-451)||(32721085-32721241)
chr6 (315-384)||(15104237-15104306)
chr6 (234-314)||(11714154-11714234)
chr6 (235-286)||(12488053-12488104)
chr6 (234-284)||(19331739-19331789)
chr6 (242-320)||(33586239-33586317)
chr6 (354-450)||(17703622-17703718)
chr6 (234-282)||(20148299-20148347)
chr6 (234-282)||(22184481-22184529)
chr6 (236-284)||(22497357-22497405)
chr6 (234-364)||(9277278-9277409)
chr6 (247-286)||(19730648-19730687)
chr6 (234-284)||(9292078-9292128)
chr6 (235-269)||(12424388-12424422)
chr6 (235-284)||(16343562-16343611)
chr6 (235-284)||(25008449-25008498)
chr6 (348-384)||(2393458-2393494)
chr6 (257-317)||(2393512-2393572)
chr6 (241-289)||(7810203-7810251)
[»] chr4 (14 HSPs)
chr4 (232-450)||(26894613-26894832)
chr4 (242-384)||(17121604-17121746)
chr4 (242-451)||(15790050-15790264)
chr4 (240-311)||(1723949-1724021)
chr4 (234-282)||(12683767-12683815)
chr4 (257-325)||(19473569-19473637)
chr4 (234-283)||(3981932-3981981)
chr4 (235-384)||(10981849-10981998)
chr4 (234-282)||(29157084-29157132)
chr4 (238-284)||(13171065-13171111)
chr4 (234-284)||(15514620-15514670)
chr4 (234-284)||(47253259-47253309)
chr4 (236-284)||(5518524-5518572)
chr4 (246-286)||(42479538-42479578)
[»] chr8 (11 HSPs)
chr8 (240-364)||(23963432-23963557)
chr8 (233-284)||(17927763-17927814)
chr8 (233-276)||(15058016-15058059)
chr8 (346-452)||(8844666-8844772)
chr8 (235-284)||(1909767-1909816)
chr8 (234-286)||(14666896-14666948)
chr8 (233-267)||(17319698-17319732)
chr8 (234-284)||(18322925-18322975)
chr8 (234-284)||(23269228-23269278)
chr8 (235-296)||(22454280-22454341)
chr8 (235-284)||(24576642-24576691)
[»] chr3 (12 HSPs)
chr3 (240-325)||(9007794-9007879)
chr3 (239-327)||(7743365-7743452)
chr3 (234-310)||(1475731-1475807)
chr3 (242-284)||(8122973-8123015)
chr3 (240-284)||(6129434-6129478)
chr3 (242-284)||(6109712-6109754)
chr3 (232-282)||(12516165-12516215)
chr3 (234-284)||(21649395-21649445)
chr3 (234-307)||(35314160-35314231)
chr3 (252-309)||(8868367-8868424)
chr3 (233-270)||(14860172-14860209)
chr3 (252-296)||(10896103-10896147)
[»] scaffold0205 (1 HSPs)
scaffold0205 (234-286)||(10972-11024)
[»] scaffold0103 (1 HSPs)
scaffold0103 (233-284)||(40777-40828)
[»] scaffold0034 (1 HSPs)
scaffold0034 (234-384)||(18428-18579)
[»] scaffold0013 (1 HSPs)
scaffold0013 (233-284)||(4483-4534)
[»] scaffold0328 (1 HSPs)
scaffold0328 (236-282)||(10294-10340)
[»] scaffold0174 (1 HSPs)
scaffold0174 (234-284)||(29335-29385)
[»] scaffold0505 (1 HSPs)
scaffold0505 (234-277)||(7867-7910)


Alignment Details
Target: chr2 (Bit Score: 360; Significance: 0; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 14 - 454
Target Start/End: Original strand, 12634604 - 12635048
Alignment:
Q  14 aataattaccatcgacagttccatatatataaactgtaaagtcagagctttctgtcactctgggctgcatataacaaaattgaacttagaccacattcat 113  Q
    |||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12634604 aataattaccattgacagttccatatatataaactgtagagtcagagctttctgtcactctgggctgcatataacaaaattgaacttagaccacattcat 12634703  T
Q  114 atatctcgaaagtaagaattttctttgttgcttgatctt----tataaaaatgcaaaaatatacttgatatgtccggttaagaactgatggaggcaacga 209  Q
     ||||| ||||||||||||||||||||| ||||||||||    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12634704 ttatcttgaaagtaagaattttctttgtcgcttgatcttcttctataaaaatgcaaaaatatacttgatatgtccggttaagaactgatggaggcaacga 12634803  T
Q  210 tagtgaaaaatgctccagtatgatggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgt 309  Q
    ||||| |||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| ||||||||||| ||||||||||||    
T  12634804 tagtggaaaatgctccggtatgatggtggaacgaaaggtgcatgcaggcacgttaacactccaactcttaagtcagtgtaggaaatgagatggaatgtgt 12634903  T
Q  310 gaaaagtgtggaaaaagtaaataatatgttggggttaagctaagtcacccttatataagcgtgtgtgagaataacggtgtccgtgatgtgcggcgcttca 409  Q
    |||||||||||||||||||||||||   |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  12634904 gaaaagtgtggaaaaagtaaataatcccttggcgttaagctaagtcacccttgtataagcgtgtgtgagaataacggtgtccgtgatgtgcggcgcttca 12635003  T
Q  410 tcaagatgtcgttgggggacacatgtacggtgtctgatgcacagg 454  Q
    |||||||||||||||||||||| ||||||||||||||||||||||    
T  12635004 tcaagatgtcgttgggggacacgtgtacggtgtctgatgcacagg 12635048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 232 - 425
Target Start/End: Original strand, 17626881 - 17627074
Alignment:
Q  232 atggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaat 331  Q
    ||||||||||||||||||  ||||| ||||||||| |||||| ||| || ||| ||||||||||| |||||||| ||||||||||||||||||||| |||    
T  17626881 atggtggaacgaaaggtgtctgcagacacgttagctctccaatgctcaaatcagtgtaggaaatgagatggaatctgtgaaaagtgtggaaaaagtgaat 17626980  T
Q  332 aatatgttggggttaagctaagtcacccttatataagcgtgtgtgagaataacggtgtccgtgatgtgcggcgcttcatcaagatgtcgttggg 425  Q
     |||  ||||||| ||||||||||||||||| ||| |||||| |||||||||| || || || | |||||||||||||||| || | |||||||    
T  17626981 cataccttggggtgaagctaagtcacccttaaataggcgtgtatgagaataaccgtctctgtaaagtgcggcgcttcatcaggaggccgttggg 17627074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 232 - 425
Target Start/End: Original strand, 17671953 - 17672146
Alignment:
Q  232 atggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaat 331  Q
    ||||||||||||||||||  ||||| ||||||||| |||||| ||| || ||| ||||||||||| |||||||| |||||||||||||| |||||| |||    
T  17671953 atggtggaacgaaaggtgtctgcagacacgttagcgctccaatgctcaaatcagtgtaggaaatgagatggaatttgtgaaaagtgtgggaaaagtgaat 17672052  T
Q  332 aatatgttggggttaagctaagtcacccttatataagcgtgtgtgagaataacggtgtccgtgatgtgcggcgcttcatcaagatgtcgttggg 425  Q
     |||  ||||||| ||||||||||||||||| ||| |||||| |||||||||| || || |||| |||||||||||||||| || | |||||||    
T  17672053 cataccttggggtgaagctaagtcacccttaaataggcgtgtatgagaataaccgtctctgtgaagtgcggcgcttcatcaggaggccgttggg 17672146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 258 - 425
Target Start/End: Original strand, 17657967 - 17658134
Alignment:
Q  258 cacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataatatgttggggttaagctaagtcac 357  Q
    ||||||||| |||||| ||| || | | ||||||||||| |||||||| | ||||||||| || |||||| ||| |||  ||||||| ||||||||||||    
T  17657967 cacgttagcgctccaatgctcaaattagtgtaggaaatgagatggaatctatgaaaagtgcgggaaaagtgaatcataccttggggtgaagctaagtcac 17658066  T
Q  358 ccttatataagcgtgtgtgagaataacggtgtccgtgatgtgcggcgcttcatcaagatgtcgttggg 425  Q
    ||||| ||| |||||| |||||||||| || || |||| |||||||||||||||| || | |||||||    
T  17658067 ccttaaataggcgtgtatgagaataaccgtctctgtgaagtgcggcgcttcatcaggaggccgttggg 17658134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 45714976 - 45715027
Alignment:
Q  233 tggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  45714976 tggtggaacgaaaggtgcatgcaggcacgttagcactccaacgctcaagtca 45715027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 353 - 449
Target Start/End: Original strand, 23257884 - 23257980
Alignment:
Q  353 gtcacccttatataagcgtgtgtgagaataacggtgtccgtgatgtgcggcgcttcatcaagatgtcgttgggggacacatgtacggtgtctgatgc 449  Q
    |||||||||||||| ||||||||||||||||| || ||||||| ||||| | ||||||||||| |   ||||| || || |||||||||||||||||    
T  23257884 gtcacccttatataggcgtgtgtgagaataaccgtctccgtgaagtgcgtcacttcatcaagaggcaattgggagatacgtgtacggtgtctgatgc 23257980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 12127772 - 12127722
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||| ||||||||| | |||||||||||||||||||||||||| ||||||    
T  12127772 ggtgggacgaaaggtacctgcaggcacgttagcactccaacgctcaagtca 12127722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 29711000 - 29711050
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||| ||||||| ||||| ||||||||||||||||||||| ||||||    
T  29711000 ggtggaacaaaaggtgtatgcatgcacgttagcactccaacgctcaagtca 29711050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 3586345 - 3586395
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||| ||||||||||||| |||||||||| ||||| ||||| ||||||    
T  3586345 ggtggaatgaaaggtgcatgccggcacgttaggactccgacgctcaagtca 3586395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 252 - 325
Target Start/End: Original strand, 17560763 - 17560837
Alignment:
Q  252 tgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtga-aaagtgtggaaaaa 325  Q
    ||||||||||||||||  |||||||| |||||| ||||||||||| | | |||||||| | || |||||||||||    
T  17560763 tgcaggcacgttagcagcccaacgctcaagtcagtgtaggaaatgaggttgaatgtgtaagaatgtgtggaaaaa 17560837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 20120329 - 20120379
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||||  |||||||||||||||||||| || || ||||||    
T  20120329 ggtggaacgaaaggtgtctgcaggcacgttagcactccgactctcaagtca 20120379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 28426231 - 28426194
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactcc 271  Q
    ||||||||||||||||| ||||||||| ||||||||||    
T  28426231 ggtggaacgaaaggtgcctgcaggcacattagcactcc 28426194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 275
Target Start/End: Original strand, 40800106 - 40800147
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacg 275  Q
    |||||||||||||||| ||| ||||||||||||||| |||||    
T  40800106 ggtggaacgaaaggtgaatgtaggcacgttagcacttcaacg 40800147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 278
Target Start/End: Original strand, 12168954 - 12168998
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgctt 278  Q
    ||||||||||||||||  ||||||||| ||| |||||||||||||    
T  12168954 ggtggaacgaaaggtgtctgcaggcacattaacactccaacgctt 12168998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 240 - 284
Target Start/End: Complemental strand, 27846622 - 27846578
Alignment:
Q  240 acgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||| |||| |||||||||||||||||||||||| | ||||||    
T  27846622 acgaaaagtgcctgcaggcacgttagcactccaacgatcaagtca 27846578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 291 - 382
Target Start/End: Complemental strand, 27933796 - 27933704
Alignment:
Q  291 gaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataatatgttgg-ggttaagctaagtcacccttatataagcgtgtgtgagaata 382  Q
    |||||| |||||||  |||||||||||||| |||||| ||| |||  |||| ||| ||| ||||| ||| |||||||  ||||||||||||||    
T  27933796 gaaatgagatggaacatgtgaaaagtgtgggaaaagtgaatcataccttggaggtgaagttaagttacctttatatagacgtgtgtgagaata 27933704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 310
Target Start/End: Original strand, 31013553 - 31013617
Alignment:
Q  246 ggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtg 310  Q
    ||||| || ||||||||||||||||||| ||| |||||| |||| |||||| ||| || ||||||    
T  31013553 ggtgcttgtaggcacgttagcactccaatgctcaagtcagtgtacgaaatgggattgagtgtgtg 31013617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 84; Significance: 1e-39; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 234 - 393
Target Start/End: Complemental strand, 69333 - 69174
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataa 333  Q
    |||||||| |||||||| |||||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||| |||| | ||| |    
T  69333 ggtggaacaaaaggtgcctgcaggcacgttagcactccaacgctcaagtcagtgtaggaaatgagatggaatgtgtgaaaagtgtgggaaaattgaatca 69234  T
Q  334 tatgttggggttaagctaagtcacccttatataagcgtgtgtgagaataacggtgtccgt 393  Q
    ||   |||| | |||||| |||||||||||||| ||||||| ||||||||| || |||||    
T  69233 taccctgggctgaagctatgtcacccttatataggcgtgtgagagaataaccgtctccgt 69174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 70; Significance: 2e-31; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 233 - 448
Target Start/End: Original strand, 8018930 - 8019144
Alignment:
Q  233 tggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaata 332  Q
    |||||| |||||||||   | |||||||||||||||| | ||||| |||||| | | ||||||| |||||||||||  ||||||  || |||||| |||     
T  8018930 tggtgggacgaaaggtatctacaggcacgttagcactacgacgctcaagtcagtatgggaaatgagatggaatgtgcaaaaagtaggggaaaagtgaatc 8019029  T
Q  333 atatgttggggtt-aagctaagtcacccttatataagcgtgtgtgagaataacggtgtccgtgatgtgcggcgcttcatcaagatgtcgttgggggacac 431  Q
    |||  |||||| | |||||| |||||||||||||| ||||||||||||||||| || |||||||  |||||||| ||||||||| |||||||  ||||||    
T  8019030 ataccttgggggtgaagctatgtcacccttatataggcgtgtgtgagaataaccgtctccgtga--tgcggcgcctcatcaagaggtcgttgaaggacac 8019127  T
Q  432 atgtacggtgtctgatg 448  Q
     ||||||||| ||||||    
T  8019128 gtgtacggtgcctgatg 8019144  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 26977722 - 26977772
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||||    
T  26977722 ggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagtca 26977772  T

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Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 242 - 283
Target Start/End: Complemental strand, 33101608 - 33101567
Alignment:
Q  242 gaaaggtgcatgcaggcacgttagcactccaacgcttaagtc 283  Q
    |||||||||||||||||||||||||||||||||||| |||||    
T  33101608 gaaaggtgcatgcaggcacgttagcactccaacgctcaagtc 33101567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 296
Target Start/End: Original strand, 30732501 - 30732561
Alignment:
Q  236 tggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatg 296  Q
    ||||||| | ||||| |||||||||||||||||||||| ||| |||||| |||||||||||    
T  30732501 tggaacggagggtgcctgcaggcacgttagcactccaatgctcaagtcattgtaggaaatg 30732561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 4601596 - 4601546
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||||  |||||||||||||||||||| ||||| ||||||    
T  4601596 ggtggaacgaaaggtgactgcaggcacgttagcactccgacgctcaagtca 4601546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 233 - 275
Target Start/End: Complemental strand, 5459818 - 5459776
Alignment:
Q  233 tggtggaacgaaaggtgcatgcaggcacgttagcactccaacg 275  Q
    |||||| |||||||||||||||||| |||||||||||||||||    
T  5459818 tggtgggacgaaaggtgcatgcaggtacgttagcactccaacg 5459776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 237 - 314
Target Start/End: Original strand, 1485362 - 1485439
Alignment:
Q  237 ggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaa 314  Q
    |||||| | |||| |||||| ||||||||||||| |||||| || ||| |||||||| || |||||||||||| ||||    
T  1485362 ggaacggagggtgtatgcagacacgttagcactcaaacgctcaaatcagtgtaggaattgagatggaatgtgtaaaaa 1485439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 3590811 - 3590859
Alignment:
Q  236 tggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||||||||||||| |||||||||| ||| | ||||||    
T  3590811 tggaacgaaaggtgcatgcaggcaccttagcactccgacgatcaagtca 3590859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 377
Target Start/End: Complemental strand, 32201620 - 32201540
Alignment:
Q  298 gatggaatgtgtgaaaagtgtggaaaaagtaaataatatgtt-ggggttaagctaagtcacccttatataagcgtgtgtga 377  Q
    |||||||||||||||||||||||||||||| |||| ||  || | ||| ||| ||||||||  ||||||| ||||||||||    
T  32201620 gatggaatgtgtgaaaagtgtggaaaaagtgaatattaccttagcggtgaagttaagtcacttttatataggcgtgtgtga 32201540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 14255140 - 14255089
Alignment:
Q  233 tggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||||||| ||||| |||| ||||| ||||||||||||||| ||||||    
T  14255140 tggtggaacgaagggtgcctgcaagcacgatagcactccaacgctcaagtca 14255089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Complemental strand, 2141049 - 2141003
Alignment:
Q  238 gaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||||||| |||||||||  |||||||||||||||| ||||||    
T  2141049 gaacgaaaggtgtatgcaggcaacttagcactccaacgctcaagtca 2141003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 22414757 - 22414807
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||||||||||||  ||||||||||||||||||  ||||| ||||||    
T  22414757 ggtggaacgaaaggtgcccgcaggcacgttagcactctgacgctcaagtca 22414807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 25408078 - 25408128
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||| ||||||||| ||||| |||||||||||||||| ||| ||||||    
T  25408078 ggtggaatgaaaggtgcctgcagacacgttagcactccaatgctcaagtca 25408128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 284
Target Start/End: Original strand, 16050394 - 16050426
Alignment:
Q  252 tgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||||||||||||||||||||| ||||||    
T  16050394 tgcaggcacgttagcactccaacgctcaagtca 16050426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 52565564 - 52565612
Alignment:
Q  236 tggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||| ||||| |||||||||||||  ||||| ||||||    
T  52565564 tggaacgaaaggtgcctgcagacacgttagcactctgacgctcaagtca 52565612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 64; Significance: 8e-28; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 234 - 384
Target Start/End: Original strand, 7449774 - 7449925
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataa 333  Q
    ||||| ||||||||||||| ||| ||||||||||||| ||||||||||||| | |  |||||| ||| ||||||||||||| ||||| |||||| ||| |    
T  7449774 ggtgggacgaaaggtgcattcagacacgttagcactctaacgcttaagtcagtatgagaaatgagattgaatgtgtgaaaaatgtgggaaaagtgaatca 7449873  T
Q  334 tatgt-tggggttaagctaagtcacccttatataagcgtgtgtgagaataac 384  Q
    ||  |  | ||| ||||||||||||||||||||| |||||||||||||||||    
T  7449874 tacatcagaggtgaagctaagtcacccttatatatgcgtgtgtgagaataac 7449925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 234 - 383
Target Start/End: Original strand, 4477180 - 4477330
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataa 333  Q
    ||||| ||||| |||||  ||||||||||||  ||||||||||| |||||| | | | ||||| ||||||||||||||||||||||| | |||| |||      
T  4477180 ggtgggacgaagggtgcccgcaggcacgttaatactccaacgctcaagtcagtatggtaaatgagatggaatgtgtgaaaagtgtgggagaagtgaatcg 4477279  T
Q  334 tatgtt-ggggttaagctaagtcacccttatataagcgtgtgtgagaataa 383  Q
     |  || ||||| ||||||||||||||||||||| || |||||||||||||    
T  4477280 gaccttgggggtgaagctaagtcacccttatataggcatgtgtgagaataa 4477330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 235 - 380
Target Start/End: Original strand, 30827053 - 30827198
Alignment:
Q  235 gtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataat 334  Q
    |||||||||||||||||||||||||||||||||||| |||| | |||| | |    |||||| ||| |||||||| | |||||| | |||||| ||| ||    
T  30827053 gtggaacgaaaggtgcatgcaggcacgttagcactcaaacgttaaagtaagttccagaaatgagatagaatgtgtaataagtgtaggaaaagtgaatcat 30827152  T
Q  335 atgttggggttaagctaagtcacccttatataagcgtgtgtgagaa 380  Q
    |  ||||||| |||||||||  |||||||||| |||| ||||||||    
T  30827153 accttggggtgaagctaagttgcccttatataggcgtctgtgagaa 30827198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 238 - 384
Target Start/End: Original strand, 8938898 - 8939045
Alignment:
Q  238 gaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataatatg 337  Q
    ||||||||||||||||||||||||||| |||||||| |||  ||||| | | |||| || ||  || ||||| |||||||||| |||||| ||| |||      
T  8938898 gaacgaaaggtgcatgcaggcacgttaacactccaatgctctagtcagtattggaactgagaaagagtgtgtaaaaagtgtgggaaaagtgaatcataca 8938997  T
Q  338 ttg-gggttaagctaagtcacccttatataagcgtgtgtgagaataac 384  Q
    ||| |||| ||||||||||||| |||||||    ||||||||||||||    
T  8938998 ttgagggtgaagctaagtcaccgttatatagatttgtgtgagaataac 8939045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 26348188 - 26348138
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||||  |||||||||||||||||||||||||| ||||||    
T  26348188 ggtggaacgaaaggtgtctgcaggcacgttagcactccaacgctcaagtca 26348138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 384
Target Start/End: Original strand, 16621190 - 16621339
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataa 333  Q
    |||||||||||||||| ||| |||||||||| |||| ||||||| ||| |||| | |||| || ||  ||  ||||||||| |||||||||||| ||| |    
T  16621190 ggtggaacgaaaggtgtatgtaggcacgttaacacttcaacgctcaagccaatattggaactgagaaaga--gtgtgaaaattgtggaaaaagtgaatca 16621287  T
Q  334 tatgtt-ggggttaagctaagtcacccttatataagcgtgtgtgagaataac 384  Q
    ||  || ||||| ||| ||  |||| |||||||||| |||||||||| ||||    
T  16621288 taccttgggggtgaagttatctcactcttatataagtgtgtgtgagagtaac 16621339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 26163619 - 26163667
Alignment:
Q  236 tggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||||||||||||||| |||| |||||||||||||||| ||||||    
T  26163619 tggaacgaaaggtgcatgcatgcacattagcactccaacgctcaagtca 26163667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 25537387 - 25537430
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgct 277  Q
    ||||||||||||||||| |||| |||||||||||||||||||||    
T  25537387 ggtggaacgaaaggtgcctgcaagcacgttagcactccaacgct 25537430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 313 - 384
Target Start/End: Complemental strand, 29279066 - 29278994
Alignment:
Q  313 aagtgtggaaaaagtaaataatatgttg-gggttaagctaagtcacccttatataagcgtgtgtgagaataac 384  Q
    ||||||||||||||  ||| |||| ||| |||| ||| ||||||||||||||||| |||||| ||||||||||    
T  29279066 aagtgtggaaaaagcgaatcatatcttgagggtaaagttaagtcacccttatataggcgtgtctgagaataac 29278994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 233 - 280
Target Start/End: Original strand, 18803899 - 18803946
Alignment:
Q  233 tggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaa 280  Q
    |||||||||||||||||| || || |||||||||||||||||| ||||    
T  18803899 tggtggaacgaaaggtgcctgaagacacgttagcactccaacgattaa 18803946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 269
Target Start/End: Original strand, 22865744 - 22865778
Alignment:
Q  235 gtggaacgaaaggtgcatgcaggcacgttagcact 269  Q
    ||||||||||||||||||||||| |||||||||||    
T  22865744 gtggaacgaaaggtgcatgcaggtacgttagcact 22865778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 24546327 - 24546367
Alignment:
Q  232 atggtggaacgaaaggtgcatgcaggcacgttagcactcca 272  Q
    ||||||||||||||||||  |||||||||||||| ||||||    
T  24546327 atggtggaacgaaaggtgtctgcaggcacgttagaactcca 24546367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 55; Significance: 2e-22; HSPs: 19)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 234 - 383
Target Start/End: Original strand, 2226625 - 2226775
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataa 333  Q
    ||||| ||||||||||  ||||||||| |||||||||||||||| |||| | ||| ||||||| |||| |||||||||||||||||| | |||| |||      
T  2226625 ggtgggacgaaaggtgtctgcaggcacattagcactccaacgctcaagttagtgtgggaaatgagatgaaatgtgtgaaaagtgtgggagaagtgaatcg 2226724  T
Q  334 tatgttggg-gttaagctaagtcacccttatataagcgtgtgtgagaataa 383  Q
    ||| ||||| || ||||||||||||| ||||||| | ||| || |||||||    
T  2226725 tatcttgggagtgaagctaagtcacctttatataggtgtgcgtaagaataa 2226775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 7486527 - 7486570
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgct 277  Q
    ||||||| ||||||||||||||||||||||||||||||||||||    
T  7486527 ggtggaatgaaaggtgcatgcaggcacgttagcactccaacgct 7486570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 246 - 384
Target Start/End: Complemental strand, 9573523 - 9573384
Alignment:
Q  246 ggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataatatgttgg-ggt 344  Q
    ||||| |||||||||||||||||||||||||  |||||||| | |||| || ||  || ||||| | |||||||| |||  | ||| |||  |||| |||    
T  9573523 ggtgcctgcaggcacgttagcactccaacgcacaagtcaatatgggaactgagaaagagtgtgtaagaagtgtgggaaacatgaatcatacattggaggt 9573424  T
Q  345 taagctaagtcacccttatataagcgtgtgtgagaataac 384  Q
     ||||||||||||||||||||| |  ||||| ||||||||    
T  9573423 gaagctaagtcacccttatataggaatgtgtaagaataac 9573384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 12644767 - 12644810
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgct 277  Q
    |||||||||||||||||||||||||| ||||||||||| |||||    
T  12644767 ggtggaacgaaaggtgcatgcaggcaagttagcactccgacgct 12644810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 234 - 269
Target Start/End: Original strand, 18773963 - 18773998
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcact 269  Q
    ||||||||||||||||||||||||||||||||||||    
T  18773963 ggtggaacgaaaggtgcatgcaggcacgttagcact 18773998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 5925584 - 5925534
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||||  |||||||||||||||||||||||| | ||||||    
T  5925584 ggtggaacgaaaggtgtctgcaggcacgttagcactccaacgatcaagtca 5925534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 9135470 - 9135420
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||||||||||||||  |||||||||||||||| |||||| ||||||    
T  9135470 ggtggaacgaaaggtgcatataggcacgttagcactctaacgctcaagtca 9135420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 384
Target Start/End: Complemental strand, 12004775 - 12004737
Alignment:
Q  346 aagctaagtcacccttatataagcgtgtgtgagaataac 384  Q
    ||||||||||||||||||||| |||||||||||||||||    
T  12004775 aagctaagtcacccttatataggcgtgtgtgagaataac 12004737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 296
Target Start/End: Original strand, 26562899 - 26562961
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatg 296  Q
    ||||||||||||||||  ||||||||| |||||||||||||||||| | ||  ||||||||||    
T  26562899 ggtggaacgaaaggtgtctgcaggcacattagcactccaacgcttaggccagagtaggaaatg 26562961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 26763020 - 26762970
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||| |||||||| | |||||||||||||||||||||||||| ||||||    
T  26763020 ggtggagcgaaaggttcttgcaggcacgttagcactccaacgctcaagtca 26762970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 16987201 - 16987165
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactc 270  Q
    ||||||||||||||||||||| |||||||||||||||    
T  16987201 ggtggaacgaaaggtgcatgcgggcacgttagcactc 16987165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 309
Target Start/End: Complemental strand, 12163796 - 12163721
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgt 309  Q
    ||||||||| | ||||| || ||||||||||||||||||||||| | || | ||||||||||| | | ||||||||    
T  12163796 ggtggaacggagggtgcctgaaggcacgttagcactccaacgctcatgttagtgtaggaaatggggttgaatgtgt 12163721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 285
Target Start/End: Original strand, 16363424 - 16363467
Alignment:
Q  242 gaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaa 285  Q
    |||||||||||| ||||| ||||||||||||||||| |||||||    
T  16363424 gaaaggtgcatgtaggcatgttagcactccaacgctcaagtcaa 16363467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 9868048 - 9867998
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||| |||||||||||||||||| ||||||||||||  ||||| ||||||    
T  9868048 ggtgggacgaaaggtgcatgcaggaacgttagcactctgacgctcaagtca 9867998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 21161224 - 21161273
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||| ||  |||||||||||||||||||||||||| ||||||    
T  21161224 ggtggaacgaaag-tgtctgcaggcacgttagcactccaacgctcaagtca 21161273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 277
Target Start/End: Original strand, 25173883 - 25173925
Alignment:
Q  235 gtggaacgaaaggtgcatgcaggcacgttagcactccaacgct 277  Q
    |||| |||||||||||||||||| ||||||||||| |||||||    
T  25173883 gtgggacgaaaggtgcatgcaggtacgttagcacttcaacgct 25173925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 29373428 - 29373478
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||| ||||||||||||||||||||| ||||| ||||||| ||| ||||||    
T  29373428 ggtgaaacgaaaggtgcatgcaggcatgttaggactccaatgctcaagtca 29373478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 309
Target Start/End: Original strand, 34889905 - 34889977
Alignment:
Q  236 tggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgt 309  Q
    ||||||||| ||||| |||||| |||||| ||||||||| || |||||| ||||||||||| | | ||||||||    
T  34889905 tggaacgaagggtgcctgcaggaacgttaccactccaacact-aagtcagtgtaggaaatgaggttgaatgtgt 34889977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 234 - 270
Target Start/End: Complemental strand, 12265201 - 12265165
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactc 270  Q
    |||||||| |||||||||||||||||||||| |||||    
T  12265201 ggtggaacaaaaggtgcatgcaggcacgttaacactc 12265165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 260 - 384
Target Start/End: Original strand, 22692101 - 22692226
Alignment:
Q  260 cgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataatatgttg-gggttaagctaagtcacc 358  Q
    |||||||| ||||||||| |||||| | | |||||||  |||||||||||||||||||||| |||||| ||| |||  ||| |||| |||||||||||||    
T  22692101 cgttagcattccaacgctcaagtcagtatgggaaatgaaatggaatgtgtgaaaagtgtgggaaaagtgaatcataacttgagggtgaagctaagtcacc 22692200  T
Q  359 cttatataagcgtgtgtgagaataac 384  Q
     ||||||| | |||||||||||||||    
T  22692201 tttatataggtgtgtgtgagaataac 22692226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 295 - 451
Target Start/End: Complemental strand, 32721241 - 32721085
Alignment:
Q  295 tgtgatggaatgtgtgaaaagtgtggaaaaagtaaataatatgttggggttaagctaagtcacccttatataagcgtgtgtgagaataacggtgtccgtg 394  Q
    ||||||| ||||||| |||||||||| |||||| ||| |||  ||||| | ||||||| ||||||||||||| |||||  ||| |||||| || | ||||    
T  32721241 tgtgatgtaatgtgtaaaaagtgtgggaaaagtgaattataccttgggatgaagctaaatcacccttatataggcgtgcatgacaataaccgtcttcgtg 32721142  T
Q  395 atgtgcggcgcttcatcaagatgtcgttgggggacacatgtacggtgtctgatgcac 451  Q
    | ||||||||  ||||||||| | |||| |  ||||  ||||||||||| |||||||    
T  32721141 aagtgcggcgtctcatcaagaggccgttagaagacatgtgtacggtgtcggatgcac 32721085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 315 - 384
Target Start/End: Complemental strand, 15104306 - 15104237
Alignment:
Q  315 gtgtggaaaaagtaaataatatgttggggttaagctaagtcacccttatataagcgtgtgtgagaataac 384  Q
    ||||| ||||||| ||| |||  ||||||| |||||||| |||||||||||| |||||||||||||||||    
T  15104306 gtgtgtaaaaagtgaatcatactttggggtgaagctaagccacccttatataggcgtgtgtgagaataac 15104237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 314
Target Start/End: Original strand, 11714154 - 11714234
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaa 314  Q
    |||| |||||||||||||||||||||||||  ||||||||| || |||||  ||||||||||| | | |||||||| ||||    
T  11714154 ggtgcaacgaaaggtgcatgcaggcacgttcacactccaacactcaagtctgtgtaggaaatgaggttgaatgtgtaaaaa 11714234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 286
Target Start/End: Complemental strand, 12488104 - 12488053
Alignment:
Q  235 gtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaat 286  Q
    |||||||||| |||||||||| |||||||||||||| |||||| ||||||||    
T  12488104 gtggaacgaagggtgcatgcatgcacgttagcactctaacgctgaagtcaat 12488053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 19331789 - 19331739
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||||| |||||| ||||||| ||||| ||||||||||||    
T  19331789 ggtggaacgaaaggtgcttgcaggtacgttagtactccgacgcttaagtca 19331739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 320
Target Start/End: Complemental strand, 33586317 - 33586239
Alignment:
Q  242 gaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtgg 320  Q
    ||||| |||||||| ||||||||||||| ||||||| || ||| |    |||||| |||||||||||||||||||||||    
T  33586317 gaaagatgcatgcatgcacgttagcacttcaacgctcaaatcagtcagagaaatgagatggaatgtgtgaaaagtgtgg 33586239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 354 - 450
Target Start/End: Complemental strand, 17703718 - 17703622
Alignment:
Q  354 tcacccttatataagcgtgtgtgagaataacggtgtccgtgatgtgcggcgcttcatcaagatgtcgttgggggacacatgtacggtgtctgatgca 450  Q
    ||||||||||||| ||| ||||||||||||  || || |||| ||| | |||||||| | || |||||||| |||||| | || |||||||||||||    
T  17703718 tcacccttatataggcgagtgtgagaataattgtctcagtgaagtgtgacgcttcattaggacgtcgttggaggacacgtataaggtgtctgatgca 17703622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 20148299 - 20148347
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagt 282  Q
    |||||||||||| |||||||||| ||||||||||||||| |||| ||||    
T  20148299 ggtggaacgaaaagtgcatgcagacacgttagcactccatcgctcaagt 20148347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 282
Target Start/End: Complemental strand, 22184529 - 22184481
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagt 282  Q
    |||||||||||| |||||||||| ||||||||||||||| |||| ||||    
T  22184529 ggtggaacgaaaagtgcatgcagacacgttagcactccatcgctcaagt 22184481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 284
Target Start/End: Complemental strand, 22497405 - 22497357
Alignment:
Q  236 tggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||| ||||| |||||||||||||| ||||| ||||||    
T  22497405 tggaacgaaaggtgcttgcagacacgttagcactccgacgctcaagtca 22497357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 364
Target Start/End: Complemental strand, 9277409 - 9277278
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataa 333  Q
    ||||||||||||||| | ||||| ||||||||||||  |||||| |||||| | | |||| || ||  || | ||| ||||||||||| ||||| ||| |    
T  9277409 ggtggaacgaaaggttcctgcagacacgttagcactataacgctcaagtcagtattggaactgagaaagagtatgtaaaaagtgtggagaaagtgaatca 9277310  T
Q  334 tatgttg-gggttaagctaagtcacccttata 364  Q
    ||  ||| |||| ||||||| |||||||||||    
T  9277309 taccttgagggtgaagctaactcacccttata 9277278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 247 - 286
Target Start/End: Complemental strand, 19730687 - 19730648
Alignment:
Q  247 gtgcatgcaggcacgttagcactccaacgcttaagtcaat 286  Q
    ||||||||||||| ||||||||||||||||| ||||||||    
T  19730687 gtgcatgcaggcatgttagcactccaacgctcaagtcaat 19730648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 9292128 - 9292078
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||||| |||| |||||||||||| | |||||| ||||||    
T  9292128 ggtggaacgaaaggtgcctgcaagcacgttagcacgctaacgctcaagtca 9292078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 269
Target Start/End: Complemental strand, 12424422 - 12424388
Alignment:
Q  235 gtggaacgaaaggtgcatgcaggcacgttagcact 269  Q
    |||||||||||||||| ||||||||||||||||||    
T  12424422 gtggaacgaaaggtgcctgcaggcacgttagcact 12424388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Original strand, 16343562 - 16343611
Alignment:
Q  235 gtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||| |||| ||||| ||||||||||||||||||||||| || ||||||    
T  16343562 gtggagcgaagggtgcctgcaggcacgttagcactccaacactcaagtca 16343611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 25008498 - 25008449
Alignment:
Q  235 gtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||| ||||||||||||||  ||||||||| |||||||||||| ||||||    
T  25008498 gtgggacgaaaggtgcatgtcggcacgttaacactccaacgctcaagtca 25008449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 348 - 384
Target Start/End: Complemental strand, 2393494 - 2393458
Alignment:
Q  348 gctaagtcacccttatataagcgtgtgtgagaataac 384  Q
    ||||||||||||||||||| |||||||| ||||||||    
T  2393494 gctaagtcacccttatataggcgtgtgtaagaataac 2393458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 257 - 317
Target Start/End: Complemental strand, 2393572 - 2393512
Alignment:
Q  257 gcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtg 317  Q
    ||||||||||||| ||| ||| |||||||| | | ||||||||||||| ||| ||||||||    
T  2393572 gcacgttagcacttcaatgctcaagtcaatatggaaaatgtgatggaaggtgagaaaagtg 2393512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 241 - 289
Target Start/End: Complemental strand, 7810251 - 7810203
Alignment:
Q  241 cgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgta 289  Q
    ||||||||||||| ||||| ||||||||||||| ||| || ||||||||    
T  7810251 cgaaaggtgcatgtaggcatgttagcactccaatgctcaaatcaatgta 7810203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 1e-20; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 232 - 450
Target Start/End: Complemental strand, 26894832 - 26894613
Alignment:
Q  232 atggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaat 331  Q
    ||||||| |||||||||||||||| ||| ||| || |||  ||||| |||||| | ||||||||| || ||| ||| | |||||||||  |||||| |||    
T  26894832 atggtgggacgaaaggtgcatgcatgcatgttggctctctgacgctcaagtcagtttaggaaatgagaaggagtgtttaaaaagtgtgagaaaagtgaat 26894733  T
Q  332 aatatgttg-gggttaagctaagtcacccttatataagcgtgtgtgagaataacggtgtccgtgatgtgcggcgcttcatcaagatgtcgttgggggaca 430  Q
      ||  ||| ||||||||  | ||||| |||||||| ||||||||||||||||| || ||  ||| ||| | |||||||| |||| |||||||| | |||    
T  26894732 cgtaccttgagggttaagaaatgtcacacttatataggcgtgtgtgagaataactgtctcattgaagtgtgacgcttcattaagaggtcgttggagaaca 26894633  T
Q  431 catgtacggtgtctgatgca 450  Q
    ||| |||| |||||||||||    
T  26894632 catatacgatgtctgatgca 26894613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 242 - 384
Target Start/End: Complemental strand, 17121746 - 17121604
Alignment:
Q  242 gaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataatatgtt-g 340  Q
    ||||||||  |||||| | | ||| ||| ||||||| |||||| ||| |||| || ||||||||||||||||||||||| |||||| |||||||  || |    
T  17121746 gaaaggtgtctgcaggtatggtagaacttcaacgctcaagtcagtgtgggaa-tgagatggaatgtgtgaaaagtgtgggaaaagtgaataataccttgg 17121648  T
Q  341 gggttaagctaagtcacccttatataagcgtgtgtgagaataac 384  Q
    |||| ||| ||| |||||||||||||  |||||||| |||||||    
T  17121647 gggtgaagttaaatcacccttatatagacgtgtgtgtgaataac 17121604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 242 - 451
Target Start/End: Original strand, 15790050 - 15790264
Alignment:
Q  242 gaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataatatgttgg 341  Q
    |||||||||||| | |||| || ||||||||||||| |||||||| |   ||||||||| ||||||||||||||||| | |||| | ||| |||  || |    
T  15790050 gaaaggtgcatgtacgcacatttgcactccaacgctcaagtcaatatcaaaaatgtgattgaatgtgtgaaaagtgttggaaaaatgaatcatacctttg 15790149  T
Q  342 ggtt-aagctaagtcacccttatataagc----gtgtgtgagaataacggtgtccgtgatgtgcggcgcttcatcaagatgtcgttgggggacacatgta 436  Q
    | || |||||||||  |||||||||| ||    ||||||| ||||||  || |||||||| ||| |||| |||| |||| || |||||  | ||| ||||    
T  15790150 gattgaagctaagtagcccttatataggcatgtgtgtgtgtgaataatcgtctccgtgatatgccgcgcctcattaagaggttgttggaagtcacgtgta 15790249  T
Q  437 cggtgtctgatgcac 451  Q
     ||||||||||||||    
T  15790250 tggtgtctgatgcac 15790264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 240 - 311
Target Start/End: Original strand, 1723949 - 1724021
Alignment:
Q  240 acgaaaggtgcatgcaggca-cgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtga 311  Q
    ||||||||||||||||| || |||||||||||||| ||| |||||| | ||||||||| ||||||||||||||    
T  1723949 acgaaaggtgcatgcagacaacgttagcactccaatgctcaagtcagtataggaaatgagatggaatgtgtga 1724021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 12683767 - 12683815
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagt 282  Q
    ||||||||||||||||| |||||||||||||||||||||||||| ||||    
T  12683767 ggtggaacgaaaggtgcctgcaggcacgttagcactccaacgctcaagt 12683815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 257 - 325
Target Start/End: Complemental strand, 19473637 - 19473569
Alignment:
Q  257 gcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaa 325  Q
    ||||||||| ||||||||||| |||||||| |  |||||| ||||||||||||||||||||||| ||||    
T  19473637 gcacgttagaactccaacgctcaagtcaatatgagaaatgagatggaatgtgtgaaaagtgtgggaaaa 19473569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 3981932 - 3981981
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtc 283  Q
    |||||||||||||||||||||| |||||||||||||||||| || |||||    
T  3981932 ggtggaacgaaaggtgcatgcatgcacgttagcactccaacactcaagtc 3981981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 235 - 384
Target Start/End: Original strand, 10981849 - 10981998
Alignment:
Q  235 gtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataat 334  Q
    |||| ||||||||||| |||||  ||||| |||||||||| || |||||| |   ||||  | ||  || ||||| |||||||||| |||||| ||| ||    
T  10981849 gtgggacgaaaggtgcctgcagcaacgttggcactccaacactcaagtcagtaatggaaccgagaaagagtgtgtaaaaagtgtgggaaaagtgaatcat 10981948  T
Q  335 atgttggggttaagctaagtcacccttatataagcgtgtgtgagaataac 384  Q
    |  ||||||  || ||||||||||||||||||  ||||||||||||||||    
T  10981949 acattggggagaaactaagtcacccttatatagacgtgtgtgagaataac 10981998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 282
Target Start/End: Original strand, 29157084 - 29157132
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagt 282  Q
    ||||||||||||||||||||||| |||||| ||||||||||||| ||||    
T  29157084 ggtggaacgaaaggtgcatgcagacacgtttgcactccaacgctcaagt 29157132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 13171065 - 13171111
Alignment:
Q  238 gaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||| ||||||||||||||||||||||| || ||||||    
T  13171065 gaacgaaaggtgcttgcaggcacgttagcactccaactctcaagtca 13171111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 15514670 - 15514620
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||| ||||| || ||||||||||||||||||||||| ||||||    
T  15514670 ggtggaacgaagggtgcctgtaggcacgttagcactccaacgctcaagtca 15514620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 47253259 - 47253309
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||| || |||||||| |||||||| ||||||||||||||||| ||||||    
T  47253259 ggtgggacaaaaggtgcttgcaggcatgttagcactccaacgctcaagtca 47253309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 236 - 284
Target Start/End: Original strand, 5518524 - 5518572
Alignment:
Q  236 tggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||  ||||| |||||||||||| ||||||| ||||||    
T  5518524 tggaacgaaaggtgagtgcagacacgttagcacttcaacgctcaagtca 5518572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 286
Target Start/End: Complemental strand, 42479578 - 42479538
Alignment:
Q  246 ggtgcatgcaggcacgttagcactccaacgcttaagtcaat 286  Q
    |||||||||| |||||||| |||||||||||| ||||||||    
T  42479578 ggtgcatgcaagcacgttaacactccaacgctcaagtcaat 42479538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 2e-19; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 240 - 364
Target Start/End: Complemental strand, 23963557 - 23963432
Alignment:
Q  240 acgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataatatgtt 339  Q
    |||||||| ||||| ||| ||||||||| | ||| ||| |||||| | | ||||||| ||||||||||||||||| ||||| |||||| ||| ||| |||    
T  23963557 acgaaaggcgcatgtaggtacgttagcatttcaatgctcaagtcagtatgggaaatgagatggaatgtgtgaaaaatgtgggaaaagtgaatcatacgtt 23963458  T
Q  340 -ggggttaagctaagtcacccttata 364  Q
     ||||| |||||||||||||||||||    
T  23963457 gggggtgaagctaagtcacccttata 23963432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 17927814 - 17927763
Alignment:
Q  233 tggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||| |||||||||||||||| ||||||||||||||||||||||||||||    
T  17927814 tggtgggacgaaaggtgcatgcatgcacgttagcactccaacgcttaagtca 17927763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 276
Target Start/End: Original strand, 15058016 - 15058059
Alignment:
Q  233 tggtggaacgaaaggtgcatgcaggcacgttagcactccaacgc 276  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  15058016 tggtggaacgaaaggtgcatgcaggcacgttagcactacaacgc 15058059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 346 - 452
Target Start/End: Original strand, 8844666 - 8844772
Alignment:
Q  346 aagctaagtcacccttatataagcgtgtgtgagaataacggtgtccgtgatgtgcggcgcttcatcaagatgtcgttgggggacacatgtacggtgtctg 445  Q
    |||||||||||||||| |||| | || |||||||||||| || ||| ||| ||||| |||||||||| || |  |||| |  |||| |||||||||| ||    
T  8844666 aagctaagtcacccttttataggtgtttgtgagaataaccgtctccatgaagtgcgacgcttcatcaggaggcagttgagaaacacttgtacggtgtttg 8844765  T
Q  446 atgcaca 452  Q
    |||||||    
T  8844766 atgcaca 8844772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 1909816 - 1909767
Alignment:
Q  235 gtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||||||||||||||||| |||||||||| | ||||||| ||||||    
T  1909816 gtggaacgaaaggtgcatgcagacacgttagcatttcaacgctaaagtca 1909767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 14666948 - 14666896
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaat 286  Q
    |||||||| |||||||| |||||||||||||||||||| ||| | ||||||||    
T  14666948 ggtggaacaaaaggtgcctgcaggcacgttagcactccgacgatcaagtcaat 14666896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 233 - 267
Target Start/End: Complemental strand, 17319732 - 17319698
Alignment:
Q  233 tggtggaacgaaaggtgcatgcaggcacgttagca 267  Q
    ||||||||||||||||||||||||||| |||||||    
T  17319732 tggtggaacgaaaggtgcatgcaggcatgttagca 17319698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 18322925 - 18322975
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||| |||||||||||||| || |||| |||||||||||| ||||||    
T  18322925 ggtggaacaaaaggtgcatgcagacatgttaacactccaacgctcaagtca 18322975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 23269228 - 23269278
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||||  | |||||| |||||||||||||| |||||||||    
T  23269228 ggtggaacgaaaggtgtctacaggcaagttagcactccaacacttaagtca 23269278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 296
Target Start/End: Complemental strand, 22454341 - 22454280
Alignment:
Q  235 gtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatg 296  Q
    |||||||| | ||||| || ||||||||| ||||||||||||  |||||| |||||||||||    
T  22454341 gtggaacggagggtgcctgtaggcacgttggcactccaacgcccaagtcagtgtaggaaatg 22454280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 284
Target Start/End: Complemental strand, 24576691 - 24576642
Alignment:
Q  235 gtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||||||||||| ||||||||||||| |||||  ||||| ||||||    
T  24576691 gtggaacgaaaggtgcctgcaggcacgttaacactctgacgctcaagtca 24576642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 5e-17; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 240 - 325
Target Start/End: Complemental strand, 9007879 - 9007794
Alignment:
Q  240 acgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaa 325  Q
    ||||||||||| ||||||||||||| |||||||||||| |||||| | | | ||||  ||||||||||||||||||||||| ||||    
T  9007879 acgaaaggtgcctgcaggcacgttaacactccaacgctcaagtcagtatggaaaataagatggaatgtgtgaaaagtgtgggaaaa 9007794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 239 - 327
Target Start/End: Complemental strand, 7743452 - 7743365
Alignment:
Q  239 aacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagt 327  Q
    ||||||||||  ||||| |||||||||||||| |||||| |||| | ||||||||||| |||||||||| | |||||||||| ||||||    
T  7743452 aacgaaaggtatatgcatgcacgttagcactcgaacgctcaagttagtgtaggaaatgagatggaatgt-taaaaagtgtgggaaaagt 7743365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 234 - 310
Target Start/End: Original strand, 1475731 - 1475807
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtg 310  Q
    ||||| ||||||||||  |||||||| | ||||||||||||||| |||||| |||| |||||| |||| ||||||||    
T  1475731 ggtgggacgaaaggtgtctgcaggcatgctagcactccaacgctcaagtcagtgtaagaaatgagatgaaatgtgtg 1475807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 8123015 - 8122973
Alignment:
Q  242 gaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||| ||||||||||||||||||||||||||| ||||||    
T  8123015 gaaaggtgtatgcaggcacgttagcactccaacgctcaagtca 8122973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 240 - 284
Target Start/End: Original strand, 6129434 - 6129478
Alignment:
Q  240 acgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||||||||||| ||| ||||||||||||||| ||||||||    
T  6129434 acgaaaggtgcatgcacgcatgttagcactccaacgtttaagtca 6129478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 242 - 284
Target Start/End: Complemental strand, 6109754 - 6109712
Alignment:
Q  242 gaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||| || |||||||||||||||||||| |||||||||    
T  6109754 gaaaggtgcttgtaggcacgttagcactccaacacttaagtca 6109712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 282
Target Start/End: Original strand, 12516165 - 12516215
Alignment:
Q  232 atggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagt 282  Q
    |||||| |||||||||||| ||||| |||||||||||||| ||||| ||||    
T  12516165 atggtgaaacgaaaggtgcctgcagacacgttagcactccgacgctcaagt 12516215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 21649395 - 21649445
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    ||||||||||||||||| |||| |||||||||||| |||||| | ||||||    
T  21649395 ggtggaacgaaaggtgcctgcaagcacgttagcaccccaacgatcaagtca 21649445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 307
Target Start/End: Complemental strand, 35314231 - 35314160
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgt 307  Q
    ||||||||| | ||||  ||||| |||||||||||||||||||| ||||||  |||||||||| ||| ||||||    
T  35314231 ggtggaacggagggtgtttgcagacacgttagcactccaacgctcaagtca--gtaggaaatgagattgaatgt 35314160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 252 - 309
Target Start/End: Original strand, 8868367 - 8868424
Alignment:
Q  252 tgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgt 309  Q
    ||||||||||||||||||||||| || |||| | ||||||||||| | | ||||||||    
T  8868367 tgcaggcacgttagcactccaacactcaagttagtgtaggaaatgaggtcgaatgtgt 8868424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 14860209 - 14860172
Alignment:
Q  233 tggtggaacgaaaggtgcatgcaggcacgttagcactc 270  Q
    |||||||||||||||||| ||||||||| |||||||||    
T  14860209 tggtggaacgaaaggtgcttgcaggcacattagcactc 14860172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 10896103 - 10896147
Alignment:
Q  252 tgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatg 296  Q
    |||||||||||||||||||||||||| |||| | ||||| |||||    
T  10896103 tgcaggcacgttagcactccaacgctcaagttagtgtagtaaatg 10896147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0205 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0205
Description:

Target: scaffold0205; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 11024 - 10972
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaat 286  Q
    |||||||| ||||||| ||||||||||||||||||||||||||| ||||||||    
T  11024 ggtggaacaaaaggtgtatgcaggcacgttagcactccaacgctcaagtcaat 10972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 233 - 284
Target Start/End: Original strand, 40777 - 40828
Alignment:
Q  233 tggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||| |||||||||| ||||||||||||||||||||||||||||| ||||||    
T  40777 tggtagaacgaaaggcgcatgcaggcacgttagcactccaacgctcaagtca 40828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 234 - 384
Target Start/End: Complemental strand, 18579 - 18428
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtcaatgtaggaaatgtgatggaatgtgtgaaaagtgtggaaaaagtaaataa 333  Q
    |||| ||||||| || | ||||| ||| ||||||||||||| || |||||| | |||| |||  || ||| |||||  ||||||| |||||| | ||| |    
T  18579 ggtgaaacgaaatgttcctgcagacactttagcactccaacactcaagtcagtatagggaataagaaggagtgtgtacaaagtgtagaaaaaatgaatca 18480  T
Q  334 tatgttggggtt-aagctaagtcacccttatataagcgtgtgtgagaataac 384  Q
    ||  || ||||| ||||||||||||||||||||| | |||||||||||||||    
T  18479 taccttcgggttgaagctaagtcacccttatataggtgtgtgtgagaataac 18428  T

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Target: scaffold0013 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 4534 - 4483
Alignment:
Q  233 tggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||||||||||||  |||| ||||||||||||||||||||| ||||||    
T  4534 tggtggaacgaaaggtgtctgcaagcacgttagcactccaacgctcaagtca 4483  T

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Target: scaffold0328 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 236 - 282
Target Start/End: Complemental strand, 10340 - 10294
Alignment:
Q  236 tggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagt 282  Q
    ||||||||||||||| || |||||| |||||||||||||||||||||    
T  10340 tggaacgaaaggtgcctgtaggcacattagcactccaacgcttaagt 10294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0174 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0174
Description:

Target: scaffold0174; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Complemental strand, 29385 - 29335
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgcttaagtca 284  Q
    |||||||||||||||||||| || || ||||||||||||||||| ||||||    
T  29385 ggtggaacgaaaggtgcatggagtcatgttagcactccaacgctcaagtca 29335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0505 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 277
Target Start/End: Original strand, 7867 - 7910
Alignment:
Q  234 ggtggaacgaaaggtgcatgcaggcacgttagcactccaacgct 277  Q
    ||||||| |||||||||||| |||||||||||||||| ||||||    
T  7867 ggtggaaggaaaggtgcatgtaggcacgttagcactctaacgct 7910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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