View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12450_low_8 (Length: 358)
Name: NF12450_low_8
Description: NF12450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12450_low_8 |
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Alignment Details
Target: chr5 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 1 - 335
Target Start/End: Complemental strand, 35965725 - 35965391
Alignment:
| Q |
1 |
tggtgagaacgaagctataatttataatcgttgaaatctcattggtcagcaggaaggagatgacccaccaccctccaagttaggtgttaataatcaattc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
35965725 |
tggtgagaacgaagctataatttataatcgttgaaatctcattggtcagcaggaaggagatgacccaccaccctccaagttaggtgtttataatcaattc |
35965626 |
T |
|
| Q |
101 |
taaatacaaaatcaattatactaataaaaagtgaaaccaaacatacatttactattccagctggactcaaccacccaactgaaagtgtgtgtttattttc |
200 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35965625 |
taaatacaaaatcaattatactaacaaaaagtgaaaccaaacatacatttactattccagctggactcaaccacccaactgaaagtgtgtgtttattttc |
35965526 |
T |
|
| Q |
201 |
agctaacctaaatgtttgtgtttttctgacacataatctagacatctacgtgaattgtttagttccatagactcataaacagtccaagttgttaaatatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35965525 |
agctaacctaaatgtttgtgtttttctgacacataatctagacatctacgtaaattgtttagttccatagactcataaacagtccaagttgttaaatatt |
35965426 |
T |
|
| Q |
301 |
tggtcctctcccctattaaccgcgaatattcacca |
335 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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| T |
35965425 |
tggtcctctcccctattaaccgcgaatattcacca |
35965391 |
T |
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