View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12450_low_9 (Length: 357)
Name: NF12450_low_9
Description: NF12450
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12450_low_9 |
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| [»] scaffold0777 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 19 - 340
Target Start/End: Original strand, 8284361 - 8284682
Alignment:
| Q |
19 |
gccaagatggaacccaaaaccacaacaaattcgcattctcgaagccattttcaactcagggatggtgaacccaccaagggaggaaattacgaagatacgt |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8284361 |
gccaagatggaacccaaaaccacaacaaattcgcattctcgaagccattttcaactcagggatggtgaacccaccaagggaggaaattacgaagatacgt |
8284460 |
T |
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| Q |
119 |
gaacgattacaagagtttggtcaagttggtgatgccaatgtcttttactggtttcaaaaccgcaagtctcgaagcaaacaaaagaaaagattcatccaca |
218 |
Q |
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| T |
8284461 |
gaacaattacaagagtttggtcaagttggtgatgccaatgtcttttactggtttcaaaaccgcaagtctcgaagcaaacaaaagaaaagattcatccaca |
8284560 |
T |
|
| Q |
219 |
acaagaaacgagaaacacaacaaaactctggtcatcaaacactcacatcaccacccaactcctcatcatcatcttcttctggtcatcaaaaagcctctcc |
318 |
Q |
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| T |
8284561 |
acaagaaacgagaaacacaacaaaactctggtcatcaaacactcacatcaccacccaactcatcatcatcatcttcttctggtcatcaaaaagcttctcc |
8284660 |
T |
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| Q |
319 |
cgatgaaattgtaatttcgaac |
340 |
Q |
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| T |
8284661 |
cgatgaaattgtaatttcgaac |
8284682 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 19 - 185
Target Start/End: Original strand, 34694435 - 34694601
Alignment:
| Q |
19 |
gccaagatggaacccaaaaccacaacaaattcgcattctcgaagccattttcaactcagggatggtgaacccaccaagggaggaaattacgaagatacgt |
118 |
Q |
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| T |
34694435 |
gccaagatggatcccaaaacctgagcaaatccacattcttgaagccatctataactcagggacgacgaatccacgtagagatgagattaagaagatacgt |
34694534 |
T |
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| Q |
119 |
gaacgattacaagagtttggtcaagttggtgatgccaatgtcttttactggtttcaaaaccgcaagt |
185 |
Q |
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| T |
34694535 |
gaacaattagaagaatttggccaagttggtgattccagtgtcttttactggtttcaaaaccgcaagt |
34694601 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 19 - 186
Target Start/End: Original strand, 34686503 - 34686670
Alignment:
| Q |
19 |
gccaagatggaacccaaaaccacaacaaattcgcattctcgaagccattttcaactcagggatggtgaacccaccaagggaggaaattacgaagatacgt |
118 |
Q |
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| T |
34686503 |
gccaagatggattccaaagcctgagcaaatccgcattcttgaagccatctacaactcagggatgaagaatccacctgtagatgaaatcaagaagatacga |
34686602 |
T |
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| Q |
119 |
gaacgattacaagagtttggtcaagttggtgatgccaatgtcttttactggtttcaaaaccgcaagtc |
186 |
Q |
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| T |
34686603 |
gaacaattacaagaatttggacaaattggtgatgcgagtgtcttttactggtttcaaaaccgcaagtc |
34686670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 110 - 247
Target Start/End: Original strand, 34682347 - 34682484
Alignment:
| Q |
110 |
aagatacgtgaacgattacaagagtttggtcaagttggtgatgccaatgtcttttactggtttcaaaaccgcaagtctcgaagcaaacaaaagaaaagat |
209 |
Q |
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| T |
34682347 |
aagatacatgaacaactacaagggtttggacaagttggtgctgttaatgtttcttactggtttcaaaaccgtaactccagaagcaaacaaaagaaaagaa |
34682446 |
T |
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| Q |
210 |
tcatccacaacaagaaacgagaaacacaacaaaactct |
247 |
Q |
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| T |
34682447 |
tcttgtacaacaagaaactaaaaacacaacaaaactct |
34682484 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 19 - 183
Target Start/End: Original strand, 4393338 - 4393502
Alignment:
| Q |
19 |
gccaagatggaacccaaaaccacaacaaattcgcattctcgaagccattttcaactcagggatggtgaacccaccaagggaggaaattacgaagatacgt |
118 |
Q |
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|||||| ||||| ||||||||| ||||||| ||||| || ||||| || ||||| || || |||||||| |||||||| || ||||| | |||||| | |
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| T |
4393338 |
gccaaggtggaatccaaaaccagaacaaatccgcatacttgaagctatcttcaattctggaatggtgaatccaccaagagaagaaataaggaagattagg |
4393437 |
T |
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| Q |
119 |
gaacgattacaagagtttggtcaagttggtgatgccaatgtcttttactggtttcaaaaccgcaa |
183 |
Q |
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| T |
4393438 |
gcacagttgcaagagtatggtcaagttggtgatgctaatgttttctattggttccaaaaccgcaa |
4393502 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 144 - 244
Target Start/End: Original strand, 6081 - 6181
Alignment:
| Q |
144 |
ttggtgatgccaatgtcttttactggtttcaaaaccgcaagtctcgaagcaaacaaaagaaaagattcatccacaacaagaaacgagaaacacaacaaaa |
243 |
Q |
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|||||||||| | |||||||||| |||||||||||||||||| ||||| ||||||||||||| || | ||||||||| || ||||||||||| ||| |
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| T |
6081 |
ttggtgatgctagcgtcttttactcgtttcaaaaccgcaagtccataagcatacaaaagaaaagaatcccctacaacaagagaccagaaacacaaccaaa |
6180 |
T |
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| Q |
244 |
c |
244 |
Q |
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| T |
6181 |
c |
6181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 5671 - 5781
Alignment:
| Q |
19 |
gccaagatggaacccaaaaccacaacaaattcgcattctcgaagccattttcaactcagggatggtgaacccaccaagggaggaaattacgaagatacgt |
118 |
Q |
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|||||||||||| ||||| | | ||||| ||||||||||||| | | |||||||||||||||||||| |||| ||| || || |||| ||||||| | |
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| T |
5671 |
gccaagatggaatccaaagcttgagcaaatccgcattctcgaagtcctcttcaactcagggatggtgaatccacaaagagatgagattaataagatacat |
5770 |
T |
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| Q |
119 |
gaacgattaca |
129 |
Q |
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|||| |||||| |
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| T |
5771 |
gaacaattaca |
5781 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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