View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12451_high_1 (Length: 633)
Name: NF12451_high_1
Description: NF12451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12451_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 289; Significance: 1e-162; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 172 - 618
Target Start/End: Original strand, 20267417 - 20267869
Alignment:
| Q |
172 |
taagcccttatgctataattgttt-atcatacttatgtatcagttattttgagtaaca-aaacaataaagtcaaactgttttgattttttgatataagca |
269 |
Q |
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| T |
20267417 |
taagcctttatgctataatttttttatcatacttatgtattagttattttgagttacataaaaaataaagttaaactgttttgatcttttgatataagca |
20267516 |
T |
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| Q |
270 |
ataagttgccttcataactcacacactatcctgcactgtttgtggaaataagcttaaaatggcatatgcacgcatcctacgttgttttcatcatctcttc |
369 |
Q |
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| T |
20267517 |
ataagctgtcttcataactcatacactatcctgcactgtttatggaaataagcttaaaatggcaaatgcacgaatcgtatgttgttttcatcatctcttc |
20267616 |
T |
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| Q |
370 |
aaaacagtctcgcaagtgcctttgtcaagagataaacacaaacaaggcaatcaaaatagatgctaa----tttacnnnnnnnnnnnnnnnnnagacgggc |
465 |
Q |
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| T |
20267617 |
aaaacagtctcgcaagtgcttttgtcaagagataagctcaaacaaggcaatcaaaatagatgctaatttttttttttgtatgtttttgttttagacgggc |
20267716 |
T |
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| Q |
466 |
ggttcttgttcttgagccggaaaatccagggggtgaggctgtggatattactccaaaggagtttggagtcagaacattggctcaggaatatggtggtggt |
565 |
Q |
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| T |
20267717 |
ggttcttgttcttgagccggaaaatccagggggtgaggctgtggatattactccaaaggagtttggagtcagaacattggctcaggaatatggtggtggt |
20267816 |
T |
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| Q |
566 |
gcttttactgttgcaggagatgttgtgttttttgcaaattataaggatcagag |
618 |
Q |
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| T |
20267817 |
gcttttactgttgcaggagatgttgtgttttttgcaaattataaggatcagag |
20267869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 7 - 167
Target Start/End: Original strand, 20267198 - 20267357
Alignment:
| Q |
7 |
ataagttgtttccatacgctcttataggcttatagcataagctctcacatatgtatagactattgatggctgtggttatctcatttgacttgaatcatgt |
106 |
Q |
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| T |
20267198 |
ataagttgtttccacatgctcttttaggcttatagcataagctctcacatatgcataaactgttgatggccgtagttctctcatttgtc-tgaatcatgt |
20267296 |
T |
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| Q |
107 |
ccaacaatatcaggataagtttcattgactctttgtgttattagcttaaaaaatgcatttt |
167 |
Q |
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| T |
20267297 |
ctaacaatatcagggtaagtttcattgaccctctgtgttattagcttaaaaaacgcatttt |
20267357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 85 - 157
Target Start/End: Original strand, 20266888 - 20266960
Alignment:
| Q |
85 |
tctcatttgacttgaatcatgtccaacaatatcaggataagtttcattgactctttgtgttattagcttaaaa |
157 |
Q |
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| T |
20266888 |
tctcatttggcttgaatcacgtccaactgaatcagggtaagtttcattgaccatttgtgttatgagattaaaa |
20266960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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