View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12451_high_4 (Length: 441)
Name: NF12451_high_4
Description: NF12451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12451_high_4 |
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Alignment Details
Target: chr8 (Bit Score: 184; Significance: 2e-99; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 238 - 433
Target Start/End: Complemental strand, 33622466 - 33622271
Alignment:
| Q |
238 |
aatgataagagatttcgatctattttatagtaacttcgattgaacaggttttcactaacggtgtctcttgtattacattgaatttgtctgagttacgtga |
337 |
Q |
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| T |
33622466 |
aatgataagagatttcgatctattttatagtaacttcgattgaacaggttttcactaacggtgtctcttgtattacattgaatatgtctgagttatgtga |
33622367 |
T |
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| Q |
338 |
tgtgtgtttgtttgatatatcaggttgcgttaagcaaaaattacggtgtcattttgttcaatctaccgtgattctaaacatccattcatctctgct |
433 |
Q |
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| T |
33622366 |
tgtgtgtttgtttgatatatcaggttgcgttaagcaaaaattacggtgtcattttgttcaatctaccgtgattctaaacatccattcatctttgct |
33622271 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 17 - 246
Target Start/End: Complemental strand, 33622879 - 33622637
Alignment:
| Q |
17 |
aaagcatcgtagctcgcagcagcatcatgctcatcatgaatgaataggcaccacgctgattttccctcacgtggt---------------tggtagagta |
101 |
Q |
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| T |
33622879 |
aaagcatcgtagctcgcagcagcatcatgctcatcatgaatgaataggcaccacgctgattttccctcacgtggtgatgatcattgtagttggtagagta |
33622780 |
T |
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| Q |
102 |
aagttgatacgggtcccatttgtaattgttcannnnnnnnnctcttccttttaatcttccataaaattttagtttatctctataacaattttactttatc |
201 |
Q |
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| T |
33622779 |
aagttgatacgggtcccatttgtaattgttcttttttttt--tcttccttttaatcttccataaaattttagtttatctctataacaattttactttatc |
33622682 |
T |
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| Q |
202 |
aaaattagattgaatagatcaatatcactttgattaaatgataag |
246 |
Q |
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| T |
33622681 |
aaaattagattgaatagatcaatatcactttgatgaaatgataag |
33622637 |
T |
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