View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12451_high_8 (Length: 256)
Name: NF12451_high_8
Description: NF12451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12451_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 9665476 - 9665234
Alignment:
| Q |
1 |
agatatgatctttaggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcctgtacctg |
100 |
Q |
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| T |
9665476 |
agatatgatctttaggaaggtggagagattggagctcaaataaccgacccaccctgcgacccatcccaatgatctgcttcgtctgtggatcctgtacctg |
9665377 |
T |
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| Q |
101 |
aacaccagatgttgaaaaatcaacattcagtccttgttcacacaattgaccaacagaaataagattaagtgtcaagttaggaatgtaatatgtgttaggt |
200 |
Q |
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| T |
9665376 |
aacaccagatgttgaaaaataaacattcagtccttgttcacacaattgaccaacaaaaataagattaagtgtcaagttaggaatgtaatatgtgtcaggc |
9665277 |
T |
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| Q |
201 |
agggtgagatttgaggtggatacatgaccggtataagtgatgt |
243 |
Q |
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| T |
9665276 |
agggtgagatttgaggtggatacatgaccggtatgagtgatgt |
9665234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 82; Significance: 8e-39; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 11351050 - 11350953
Alignment:
| Q |
1 |
agatatgatctttaggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcctgtacc |
98 |
Q |
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| T |
11351050 |
agatatgatctttaggaaggtggagagattggagctcaaataaccgacccaccctgcgacccgtcccaatgatctgcttcgtctgtggatcctatacc |
11350953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 15 - 241
Target Start/End: Complemental strand, 12617584 - 12617358
Alignment:
| Q |
15 |
ggaaggtggagagattggagctcaaataaccaacccaccctgtgacccatcccaatgatctgcttcgtctgtggatcctgtacctgaacaccagatgttg |
114 |
Q |
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| T |
12617584 |
ggaagatgaagagattgaagctcaaataatagacccaccctgcgacatgtcccaatgatatgtttcgtttgtagattaagtacatggacacctgaaggag |
12617485 |
T |
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| Q |
115 |
aaaaatcaacattcagtccttgttcacacaattgaccaacagaaataagattaagtgtcaagttaggaatgtaatatgtgttaggtagggtgagatttga |
214 |
Q |
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| T |
12617484 |
aaaaataaacattttgtccttgttcacacaattggccaacagaaataagattaagtgtcaagttctgtatgcaatagatgtaaggaagagtgaggtttga |
12617385 |
T |
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| Q |
215 |
ggtggatacatgaccggtataagtgat |
241 |
Q |
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| T |
12617384 |
ggtggatacatgactagtatgagtgat |
12617358 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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