View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12451_low_11 (Length: 352)

Name: NF12451_low_11
Description: NF12451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12451_low_11
NF12451_low_11
[»] chr2 (45 HSPs)
chr2 (117-341)||(10394259-10394469)
chr2 (157-228)||(6075497-6075568)
chr2 (178-233)||(28108433-28108488)
chr2 (178-229)||(30757626-30757677)
chr2 (178-229)||(41436077-41436128)
chr2 (16-74)||(10393440-10393498)
chr2 (197-326)||(40964951-40965082)
chr2 (178-331)||(3100292-3100449)
chr2 (174-332)||(28572103-28572261)
chr2 (117-169)||(43950424-43950476)
chr2 (180-228)||(44424323-44424371)
chr2 (117-172)||(43077702-43077757)
chr2 (181-231)||(8031737-8031787)
chr2 (117-171)||(33755334-33755388)
chr2 (174-228)||(43427140-43427194)
chr2 (181-226)||(435139-435184)
chr2 (180-233)||(33880152-33880205)
chr2 (181-233)||(7648927-7648979)
chr2 (180-228)||(18181273-18181321)
chr2 (181-229)||(23684957-23685005)
chr2 (271-326)||(24451680-24451736)
chr2 (180-228)||(26273758-26273806)
chr2 (181-229)||(28301432-28301480)
chr2 (181-233)||(28925909-28925961)
chr2 (185-233)||(33751455-33751503)
chr2 (117-169)||(41436158-41436209)
chr2 (181-228)||(3199897-3199944)
chr2 (181-228)||(8550703-8550750)
chr2 (117-172)||(24775784-24775839)
chr2 (297-332)||(31348403-31348438)
chr2 (178-228)||(4794572-4794622)
chr2 (181-231)||(13375251-13375301)
chr2 (117-171)||(44534459-44534513)
chr2 (297-326)||(28108562-28108591)
chr2 (297-326)||(30757747-30757776)
chr2 (183-228)||(33275761-33275806)
chr2 (180-229)||(38282483-38282532)
chr2 (180-228)||(2756673-2756721)
chr2 (180-228)||(5425856-5425904)
chr2 (180-228)||(9472421-9472469)
chr2 (180-228)||(31348510-31348558)
chr2 (181-233)||(37247945-37247997)
chr2 (117-169)||(40965093-40965145)
chr2 (181-229)||(43077787-43077835)
chr2 (196-228)||(44024717-44024749)
[»] chr7 (44 HSPs)
chr7 (117-330)||(45890834-45891049)
chr7 (174-233)||(33584557-33584616)
chr7 (178-232)||(29434638-29434692)
chr7 (178-233)||(29257541-29257596)
chr7 (174-229)||(31581497-31581552)
chr7 (178-326)||(2846734-2846885)
chr7 (181-233)||(34963872-34963924)
chr7 (174-229)||(30463014-30463069)
chr7 (117-172)||(37490594-37490649)
chr7 (117-171)||(44604454-44604508)
chr7 (261-326)||(48981277-48981342)
chr7 (178-231)||(48981652-48981705)
chr7 (130-174)||(29434569-29434613)
chr7 (180-228)||(37264312-37264360)
chr7 (180-228)||(37496457-37496505)
chr7 (117-169)||(40038085-40038137)
chr7 (197-233)||(47453998-47454034)
chr7 (271-326)||(7426033-7426086)
chr7 (174-229)||(23703914-23703969)
chr7 (181-228)||(25778743-25778790)
chr7 (180-227)||(25940809-25940856)
chr7 (180-227)||(28333171-28333218)
chr7 (117-172)||(30463092-30463147)
chr7 (178-233)||(36117655-36117710)
chr7 (178-229)||(44604535-44604586)
chr7 (178-233)||(46288489-46288544)
chr7 (117-171)||(2846652-2846706)
chr7 (181-227)||(27234503-27234549)
chr7 (130-172)||(29645223-29645265)
chr7 (185-231)||(40038176-40038222)
chr7 (119-172)||(18235266-18235319)
chr7 (271-331)||(33584455-33584516)
chr7 (180-229)||(37157168-37157217)
chr7 (178-231)||(49100560-49100613)
chr7 (181-229)||(2842113-2842161)
chr7 (181-229)||(5724768-5724816)
chr7 (117-172)||(7425853-7425909)
chr7 (178-233)||(11616555-11616611)
chr7 (180-228)||(14648979-14649027)
chr7 (180-228)||(32775982-32776030)
chr7 (180-228)||(34064214-34064262)
chr7 (297-329)||(36194824-36194856)
chr7 (174-230)||(38181928-38181984)
chr7 (180-228)||(38589733-38589781)
[»] chr3 (40 HSPs)
chr3 (117-326)||(39365013-39365226)
chr3 (181-233)||(54493902-54493954)
chr3 (117-172)||(54122200-54122255)
chr3 (273-326)||(12744711-12744764)
chr3 (171-229)||(15280603-15280661)
chr3 (181-233)||(32827365-32827417)
chr3 (181-229)||(41031570-41031618)
chr3 (180-231)||(1334841-1334892)
chr3 (178-233)||(5245406-5245461)
chr3 (117-172)||(9017877-9017932)
chr3 (178-233)||(33994651-33994706)
chr3 (181-228)||(37041934-37041981)
chr3 (117-172)||(55415415-55415470)
chr3 (181-227)||(26832071-26832117)
chr3 (178-228)||(52325176-52325226)
chr3 (180-233)||(32023161-32023214)
chr3 (184-229)||(47684765-47684810)
chr3 (181-229)||(26134764-26134812)
chr3 (181-229)||(38600867-38600915)
chr3 (180-228)||(42547166-42547214)
chr3 (181-229)||(45392088-45392136)
chr3 (117-172)||(10855070-10855125)
chr3 (117-172)||(11251103-11251158)
chr3 (174-229)||(15082001-15082055)
chr3 (117-172)||(21296479-21296534)
chr3 (178-228)||(30261559-30261610)
chr3 (117-172)||(33994733-33994788)
chr3 (181-228)||(34081116-34081163)
chr3 (117-172)||(39866529-39866584)
chr3 (117-164)||(54845492-54845539)
chr3 (261-323)||(21585554-21585616)
chr3 (181-219)||(39825833-39825871)
chr3 (297-326)||(1922993-1923022)
chr3 (180-229)||(9218143-9218192)
chr3 (181-230)||(46786042-46786091)
chr3 (180-233)||(54021518-54021571)
chr3 (180-228)||(1923089-1923137)
chr3 (180-228)||(39329810-39329858)
chr3 (180-228)||(48409583-48409631)
chr3 (271-323)||(48744126-48744178)
[»] chr4 (54 HSPs)
chr4 (117-227)||(2906684-2906794)
chr4 (174-229)||(32559161-32559216)
chr4 (174-233)||(39258326-39258385)
chr4 (178-233)||(42024259-42024314)
chr4 (180-229)||(29644353-29644402)
chr4 (178-233)||(38976985-38977040)
chr4 (178-233)||(41710202-41710257)
chr4 (178-232)||(39979775-39979829)
chr4 (178-227)||(4360466-4360515)
chr4 (178-231)||(49306583-49306636)
chr4 (180-228)||(40021008-40021056)
chr4 (119-174)||(4357641-4357696)
chr4 (174-229)||(26799270-26799325)
chr4 (117-172)||(35909549-35909604)
chr4 (181-228)||(49448840-49448887)
chr4 (178-233)||(49812223-49812278)
chr4 (117-168)||(54729460-54729511)
chr4 (181-227)||(18509446-18509492)
chr4 (261-322)||(33047400-33047461)
chr4 (272-329)||(42544105-42544161)
chr4 (171-228)||(43335074-43335131)
chr4 (180-232)||(3686006-3686058)
chr4 (180-228)||(4354447-4354495)
chr4 (181-229)||(4357566-4357614)
chr4 (181-233)||(35998178-35998230)
chr4 (180-228)||(41436480-41436528)
chr4 (181-229)||(42185857-42185905)
chr4 (181-293)||(8294962-8295075)
chr4 (119-174)||(17237117-17237172)
chr4 (185-232)||(22496742-22496789)
chr4 (117-172)||(27977223-27977278)
chr4 (181-228)||(47277743-47277790)
chr4 (181-228)||(47846898-47846945)
chr4 (178-233)||(54729542-54729596)
chr4 (118-172)||(4360385-4360439)
chr4 (178-228)||(22872446-22872496)
chr4 (181-231)||(37309694-37309744)
chr4 (126-172)||(40020933-40020979)
chr4 (297-326)||(4360587-4360616)
chr4 (261-326)||(18849903-18849967)
chr4 (272-320)||(29656469-29656520)
chr4 (180-229)||(39052961-39053010)
chr4 (178-231)||(42544205-42544258)
chr4 (180-228)||(9052110-9052158)
chr4 (180-228)||(10099785-10099833)
chr4 (181-225)||(21954491-21954535)
chr4 (180-228)||(22020570-22020618)
chr4 (180-228)||(25250653-25250701)
chr4 (180-228)||(29550787-29550835)
chr4 (180-228)||(38319910-38319958)
chr4 (178-230)||(39976448-39976500)
chr4 (178-230)||(44020820-44020872)
chr4 (197-229)||(47787924-47787956)
chr4 (173-213)||(50714596-50714636)
[»] chr5 (41 HSPs)
chr5 (261-329)||(41686636-41686704)
chr5 (178-326)||(42575697-42575848)
chr5 (178-232)||(11099536-11099590)
chr5 (126-171)||(41594833-41594878)
chr5 (271-334)||(5357972-5358035)
chr5 (117-172)||(11099454-11099509)
chr5 (178-233)||(17243013-17243068)
chr5 (178-233)||(20189886-20189941)
chr5 (178-229)||(35334585-35334636)
chr5 (174-231)||(858331-858388)
chr5 (117-169)||(28057807-28057859)
chr5 (178-233)||(4412377-4412432)
chr5 (181-228)||(6173042-6173089)
chr5 (181-326)||(6610733-6610883)
chr5 (178-233)||(13135747-13135802)
chr5 (178-229)||(41184115-41184166)
chr5 (181-231)||(7613703-7613753)
chr5 (184-233)||(13717004-13717053)
chr5 (124-169)||(24231089-24231134)
chr5 (180-221)||(25344799-25344840)
chr5 (119-172)||(35646068-35646121)
chr5 (180-228)||(72166-72214)
chr5 (180-228)||(39212612-39212660)
chr5 (178-233)||(3725180-3725235)
chr5 (120-167)||(5816814-5816861)
chr5 (181-228)||(6629455-6629502)
chr5 (181-228)||(13422414-13422461)
chr5 (271-326)||(19817114-19817169)
chr5 (178-233)||(33988194-33988249)
chr5 (117-172)||(33988276-33988331)
chr5 (260-326)||(7276282-7276347)
chr5 (178-228)||(39183686-39183736)
chr5 (182-228)||(41268337-41268383)
chr5 (181-231)||(42211329-42211379)
chr5 (174-228)||(42479541-42479595)
chr5 (178-227)||(6735416-6735465)
chr5 (174-231)||(8692873-8692930)
chr5 (178-219)||(42871046-42871087)
chr5 (183-219)||(86981-87017)
chr5 (271-331)||(8369852-8369912)
chr5 (178-230)||(33012351-33012403)
[»] chr8 (42 HSPs)
chr8 (178-233)||(29615792-29615847)
chr8 (178-233)||(44790480-44790535)
chr8 (178-326)||(5391946-5392098)
chr8 (178-231)||(32967335-32967388)
chr8 (178-230)||(45425482-45425534)
chr8 (178-233)||(38252496-38252551)
chr8 (174-228)||(27987657-27987711)
chr8 (174-228)||(28044959-28045013)
chr8 (180-228)||(2195467-2195515)
chr8 (180-228)||(7258427-7258475)
chr8 (178-233)||(12653681-12653736)
chr8 (117-172)||(29615874-29615929)
chr8 (271-326)||(38252592-38252647)
chr8 (178-232)||(5962531-5962585)
chr8 (178-228)||(42412441-42412491)
chr8 (272-326)||(44790578-44790631)
chr8 (261-322)||(138936-138996)
chr8 (174-231)||(33746273-33746330)
chr8 (180-228)||(27868385-27868433)
chr8 (180-228)||(33826230-33826278)
chr8 (117-172)||(139098-139153)
chr8 (178-229)||(2349348-2349399)
chr8 (178-225)||(10728980-10729027)
chr8 (180-227)||(11637140-11637187)
chr8 (178-229)||(22490389-22490440)
chr8 (178-233)||(28802761-28802816)
chr8 (178-229)||(39171541-39171592)
chr8 (273-323)||(21587177-21587227)
chr8 (119-169)||(45197690-45197739)
chr8 (133-174)||(138691-138732)
chr8 (261-326)||(2119614-2119679)
chr8 (178-223)||(5423222-5423267)
chr8 (178-231)||(34287137-34287190)
chr8 (180-228)||(8418362-8418410)
chr8 (181-217)||(9014610-9014646)
chr8 (180-228)||(14689959-14690007)
chr8 (180-228)||(14748766-14748814)
chr8 (178-214)||(21587290-21587326)
chr8 (180-228)||(28791307-28791355)
chr8 (120-172)||(31410587-31410639)
chr8 (117-169)||(32241400-32241452)
chr8 (180-232)||(44615425-44615477)
[»] chr1 (41 HSPs)
chr1 (178-233)||(28839333-28839388)
chr1 (174-233)||(8327711-8327770)
chr1 (178-233)||(11324242-11324297)
chr1 (178-233)||(11482263-11482318)
chr1 (174-229)||(38664399-38664454)
chr1 (178-233)||(51749242-51749297)
chr1 (178-330)||(3555614-3555768)
chr1 (117-171)||(8327794-8327848)
chr1 (184-229)||(42309430-42309475)
chr1 (181-233)||(26755970-26756022)
chr1 (181-233)||(27698806-27698858)
chr1 (180-228)||(29225752-29225800)
chr1 (117-169)||(32587844-32587896)
chr1 (117-172)||(42926210-42926265)
chr1 (178-229)||(45889307-45889358)
chr1 (178-233)||(46536334-46536389)
chr1 (178-321)||(8773141-8773291)
chr1 (117-171)||(28839416-28839470)
chr1 (117-174)||(36467172-36467229)
chr1 (178-231)||(46496014-46496067)
chr1 (178-231)||(49494222-49494275)
chr1 (197-233)||(19532997-19533033)
chr1 (180-228)||(25842598-25842646)
chr1 (180-228)||(35622840-35622888)
chr1 (180-228)||(36232850-36232898)
chr1 (117-169)||(46273239-46273291)
chr1 (181-229)||(50267500-50267548)
chr1 (181-232)||(36467257-36467308)
chr1 (178-229)||(48242649-48242700)
chr1 (117-172)||(52830391-52830446)
chr1 (174-228)||(10587636-10587690)
chr1 (117-171)||(51749160-51749214)
chr1 (119-168)||(6787327-6787376)
chr1 (180-229)||(17724775-17724824)
chr1 (178-219)||(27831854-27831895)
chr1 (181-230)||(28277100-28277149)
chr1 (297-326)||(29225588-29225617)
chr1 (181-233)||(7785336-7785388)
chr1 (188-232)||(7787672-7787716)
chr1 (297-329)||(26583623-26583655)
chr1 (180-228)||(29756203-29756251)
[»] chr6 (15 HSPs)
chr6 (178-332)||(15081315-15081472)
chr6 (174-326)||(33109271-33109426)
chr6 (178-233)||(30064007-30064062)
chr6 (178-223)||(117083-117128)
chr6 (180-228)||(33018004-33018052)
chr6 (180-228)||(34441890-34441938)
chr6 (181-228)||(2310349-2310396)
chr6 (178-233)||(7301138-7301193)
chr6 (117-172)||(31265855-31265910)
chr6 (119-172)||(2657977-2658030)
chr6 (180-228)||(4552908-4552956)
chr6 (117-169)||(7739494-7739546)
chr6 (180-228)||(15321285-15321333)
chr6 (180-228)||(15371923-15371971)
chr6 (290-326)||(33921642-33921678)
[»] scaffold0221 (1 HSPs)
scaffold0221 (178-231)||(8883-8936)
[»] scaffold0058 (1 HSPs)
scaffold0058 (178-229)||(14454-14505)
[»] scaffold0001 (1 HSPs)
scaffold0001 (178-233)||(394772-394827)
[»] scaffold0227 (1 HSPs)
scaffold0227 (117-165)||(8949-8997)
[»] scaffold0321 (1 HSPs)
scaffold0321 (190-233)||(9619-9662)
[»] scaffold0045 (1 HSPs)
scaffold0045 (178-229)||(26320-26371)
[»] scaffold0034 (3 HSPs)
scaffold0034 (178-233)||(98819-98874)
scaffold0034 (117-172)||(98901-98956)
scaffold0034 (261-321)||(97962-98022)
[»] scaffold0028 (1 HSPs)
scaffold0028 (178-229)||(26611-26662)
[»] scaffold0086 (1 HSPs)
scaffold0086 (180-229)||(5816-5865)
[»] scaffold0003 (1 HSPs)
scaffold0003 (131-172)||(352451-352492)
[»] scaffold0262 (1 HSPs)
scaffold0262 (180-228)||(12496-12544)


Alignment Details
Target: chr2 (Bit Score: 123; Significance: 4e-63; HSPs: 45)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 123; E-Value: 4e-63
Query Start/End: Original strand, 117 - 341
Target Start/End: Original strand, 10394259 - 10394469
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtggaaaatggaatatattaaattgggaatgatgaaagtagtattaa 216  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           | ||||||    
T  10394259 tgtataaaagaaggagagagaaaaataattttaaatgtttttgttaagtattggtggaaaatggaatatattaaattggga-----------aatattaa 10394347  T
Q  217 ttatagttataaagggagnnnnnnngtaattattattgtattgaaaataactcggttattttgggacactttattttgaaaaatggctcagttattatgg 316  Q
    |||||||||||||||||          ||||||||||||||||||||| |||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  10394348 ttatagttataaagggaaaaaaaa---aattattattgtattgaaaatgactcagttattttgggacactttattttggaaaatggctcagttattatgg 10394444  T
Q  317 gacggagggaatatatcacaggttc 341  Q
    |||||||||| ||||||||| ||||    
T  10394445 gacggagggagtatatcacatgttc 10394469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 6075568 - 6075497
Alignment:
Q  157 ttgttaagtattggtggaaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||||||| ||| ||| | |||||||||||||||||| ||||||||||||||||||||| ||||||||    
T  6075568 ttgttaagtattagtgcaaagtagaatatattaaattgggagtgatgaaagtagtattaattagagttataa 6075497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 28108433 - 28108488
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||||    
T  28108433 tggaatatattgaattgagaatgatgaaagtagtattaattagagttataaaggga 28108488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 30757626 - 30757677
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  30757626 tggaatatattgaattgggaatgatgaaagtagtattaattagagttataaa 30757677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 41436128 - 41436077
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||| ||||| |||||||||||||||||||||||| |||||||||    
T  41436128 tggaatatattgaattgagaatgatgaaagtagtattaattagagttataaa 41436077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 16 - 74
Target Start/End: Original strand, 10393440 - 10393498
Alignment:
Q  16 gacatcagattgtccgatgataacctaacgttttttaacaattcgtgtgtgtggtatgt 74  Q
    ||||| ||||||||  ||||||||||||||||||||||||||||||| ||| |||||||    
T  10393440 gacattagattgtctcatgataacctaacgttttttaacaattcgtgcgtgcggtatgt 10393498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 197 - 326
Target Start/End: Complemental strand, 40965082 - 40964951
Alignment:
Q  197 aatgatgaaagtagtattaattatagttataaagggagnnnnnnngtaattattattgtattga-----aaataactcggttattttgggacactttatt 291  Q
    ||||||||||||| ||||||||| |||||||||||||        ||||||| |||||||||||     ||||||||| |||||||||||||| ||  ||    
T  40965082 aatgatgaaagtaatattaattagagttataaaggga---aaaaagtaattaatattgtattgaaaaataaataactcagttattttgggacatttcttt 40964986  T
Q  292 ttgaaaaatggctcagttattatgggacggaggga 326  Q
    ||   ||||| ||||||||||||||||| ||||||    
T  40964985 tttgcaaatgactcagttattatgggactgaggga 40964951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 178 - 331
Target Start/End: Complemental strand, 3100449 - 3100292
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagggagnnnnnnngtaattattattgtattga------aaataactcgg 271  Q
    |||||||||||||||||| | |  |||||||||||||||||| ||||| |||||||        ||||||| |||||||||||      |||| |||| |    
T  3100449 tggaatatattaaattggaagttgtgaaagtagtattaattagagttacaaaggga---aaaaagtaattaatattgtattgaaaagtgaaatgactcag 3100353  T
Q  272 ttattttgggacac-tttattttgaaaaatggctcagttattatgggacggagggaatata 331  Q
    |||||||| ||||| ||| ||||   |||||||||||||||| ||||||||||||| ||||    
T  3100352 ttattttgagacacttttttttttgcaaatggctcagttattgtgggacggagggagtata 3100292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 174 - 332
Target Start/End: Complemental strand, 28572261 - 28572103
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagggagnnnnnnngtaattattattgtattgaaaa------taac 267  Q
    |||||| |||||||| |||||| | |  |||||||||||||||||| |||||||||| ||        ||||||| ||||||||||||||      | ||    
T  28572261 aaaatgaaatatattgaattggaagttgtgaaagtagtattaattacagttataaagaga------aagtaattaatattgtattgaaaagtgaaatgac 28572168  T
Q  268 tcggttattttgggacactttattttgaaaaatggctcagttattatgggacggagggaatatat 332  Q
    || |||||||||||||||||| | ||   ||||| |||||||||| ||||||||||||| |||||    
T  28572167 tcagttattttgggacactttttatttgcaaatgtctcagttattgtgggacggagggagtatat 28572103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 43950424 - 43950476
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 169  Q
    |||||||  ||| |||||||||||||| |||||||||||||||||||||||||    
T  43950424 tgtataagtgaaagagagagaaaaatagttttaaatgtttttgttaagtattg 43950476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 44424323 - 44424371
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  44424323 gaatatattgaattgagaatgatgaaagtagtattaattagagttataa 44424371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 43077702 - 43077757
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| |||||||||||||||||| ||||||||||  ||||||| ||||||||    
T  43077702 tgtataaatgaatgagagagaaaaatagttttaaatgtacttgttaactattggtg 43077757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 8031787 - 8031737
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    |||||||| ||||| ||||||| |||||||||||||||| |||||||||||    
T  8031787 aatatattgaattgtgaatgataaaagtagtattaattaaagttataaagg 8031737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 33755388 - 33755334
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 171  Q
    |||||||| ||| ||||||||||||| ||||||| |||| |||||||||||||||    
T  33755388 tgtataaatgaaggagagagaaaaatgattttaagtgttattgttaagtattggt 33755334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 43427140 - 43427194
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||| ||||||||| |||||||| |||||||||||||||||||||  |||||||    
T  43427140 aaaatagaatatattgaattgggagtgatgaaagtagtattaattagtgttataa 43427194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 181 - 226
Target Start/End: Original strand, 435139 - 435184
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttat 226  Q
    |||||||| ||||| |||||||||||||||||||||||| ||||||    
T  435139 aatatattgaattgagaatgatgaaagtagtattaattaaagttat 435184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 233
Target Start/End: Complemental strand, 33880205 - 33880152
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||| |||||||| || |||||||| ||||||||| |||||||||||||    
T  33880205 gaatatattgaattgggagtggtgaaagtaatattaattagagttataaaggga 33880152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 7648927 - 7648979
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    |||||||| |||||||| |||||||| |||||||||||| | |||||||||||    
T  7648927 aatatattgaattgggagtgatgaaaatagtattaattagaattataaaggga 7648979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 18181273 - 18181321
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||| || |||||||||| ||||||||||||||||||| ||||||||    
T  18181273 gaatattttgaattgggaataatgaaagtagtattaattagagttataa 18181321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 23685005 - 23684957
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||| ||||| || ||||||||||||||||||||| |||||||||    
T  23685005 aatatattgaattgagagtgatgaaagtagtattaattagagttataaa 23684957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 24451736 - 24451680
Alignment:
Q  271 gttattttgggacactttattt-tgaaaaatggctcagttattatgggacggaggga 326  Q
    |||||||||||| ||||| ||| |  |||||||||||||||||||||||||||||||    
T  24451736 gttattttgggatactttttttattgaaaatggctcagttattatgggacggaggga 24451680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 26273806 - 26273758
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| ||||||||||||||||||||| | ||||||    
T  26273806 gaatatattgaattgggagtgatgaaagtagtattaattaaatttataa 26273758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 28301480 - 28301432
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||| ||||| || ||||||||||||||||||||| |||||||||    
T  28301480 aatatattgaattgagagtgatgaaagtagtattaattagagttataaa 28301432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 28925909 - 28925961
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    |||||||| ||||||||||||| |||  ||||||||||| |||||||||||||    
T  28925909 aatatattgaattgggaatgatcaaaacagtattaattagagttataaaggga 28925961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 185 - 233
Target Start/End: Complemental strand, 33751503 - 33751455
Alignment:
Q  185 tattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    |||| ||||| || ||||||||||||||||||||| |||||||||||||    
T  33751503 tattgaattgagagtgatgaaagtagtattaattagagttataaaggga 33751455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 41436209 - 41436158
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 169  Q
    |||||||| |||| |||||||||| ||||||||| ||||||||||||||||||    
T  41436209 tgtataaatgaattagagagaaaa-taattttaagtgtttttgttaagtattg 41436158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 3199944 - 3199897
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||| |||||||| || |||||||||||||||||| ||||||||    
T  3199944 aatatattgaattgggagtggtgaaagtagtattaattagagttataa 3199897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 8550703 - 8550750
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||| ||||  || ||||||||||||||||||||||||||||||    
T  8550703 aatatattgaattaagagtgatgaaagtagtattaattatagttataa 8550750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 24775784 - 24775839
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| ||||||||||||||||||||| ||   ||||||||||||||||    
T  24775784 tgtataaatgaaggagagagaaaaataattttaagtgcacttgttaagtattggtg 24775839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 297 - 332
Target Start/End: Complemental strand, 31348438 - 31348403
Alignment:
Q  297 aaatggctcagttattatgggacggagggaatatat 332  Q
    |||||||||||||||||||||||||||||| |||||    
T  31348438 aaatggctcagttattatgggacggagggagtatat 31348403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 4794622 - 4794572
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||||| |||||  | ||||||||||||||||||||| ||||||||    
T  4794622 tggaatatattgaattgaaagtgatgaaagtagtattaattagagttataa 4794572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Original strand, 13375251 - 13375301
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    |||||||| ||||| ||||||||||| || ||||||||| |||||||||||    
T  13375251 aatatattgaattgagaatgatgaaaataatattaattagagttataaagg 13375301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 44534459 - 44534513
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 171  Q
    |||||||| ||| || ||| |||||| |||||||||||| |||||||||||||||    
T  44534459 tgtataaatgaaggacagaaaaaaatgattttaaatgttcttgttaagtattggt 44534513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Original strand, 28108562 - 28108591
Alignment:
Q  297 aaatggctcagttattatgggacggaggga 326  Q
    ||||||||||||||||||||||||||||||    
T  28108562 aaatggctcagttattatgggacggaggga 28108591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Original strand, 30757747 - 30757776
Alignment:
Q  297 aaatggctcagttattatgggacggaggga 326  Q
    ||||||||||||||||||||||||||||||    
T  30757747 aaatggctcagttattatgggacggaggga 30757776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 183 - 228
Target Start/End: Original strand, 33275761 - 33275806
Alignment:
Q  183 tatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||| |||||||||||||||||||| ||||||||| | ||||||    
T  33275761 tatattgaattgggaatgatgaaagtaatattaattaaaattataa 33275806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 38282483 - 38282532
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||||||||||||| || |||||||| ||||||||| | |||||||    
T  38282483 gaatatattaaattgggagtggtgaaagtaatattaattagaattataaa 38282532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 2756721 - 2756673
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||||||||||| | ||||| || |||||||||||| ||||||||    
T  2756721 gaatatattaaattggaagtgatgtaaatagtattaattagagttataa 2756673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 5425904 - 5425856
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||||||||||||||| |||||||| ||| | ||||||    
T  5425904 gaatatattgaattgggaatgatgaaattagtattagttagatttataa 5425856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 9472469 - 9472421
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||  | || |||||||||||||||||||||||||||    
T  9472469 gaatatattgaattgatagtggtgaaagtagtattaattatagttataa 9472421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 31348558 - 31348510
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||| |||||| ||||||||||||||||||  |||||||    
T  31348558 gaatatattgaattaggaatggtgaaagtagtattaattagtgttataa 31348510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 37247945 - 37247997
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    |||||||| ||||| |  ||||||||||| ||||||||| |||||||||||||    
T  37247945 aatatattgaattgagtgtgatgaaagtaatattaattagagttataaaggga 37247997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 40965145 - 40965093
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 169  Q
    |||||||| ||| |||||||||||||| |||||| ||  ||||||||||||||    
T  40965145 tgtataaatgaaggagagagaaaaatagttttaagtgcatttgttaagtattg 40965093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 43077787 - 43077835
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||| |||||  ||||||||||||| ||||||||| |||||||||    
T  43077787 aatatattgaattgaaaatgatgaaagtaatattaattagagttataaa 43077835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 44024749 - 44024717
Alignment:
Q  196 gaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||||| |||||||||||||||||||||    
T  44024749 gaatgatgaaaatagtattaattatagttataa 44024717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 1e-44; HSPs: 44)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 117 - 330
Target Start/End: Original strand, 45890834 - 45891049
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtggaaaatggaatatattaaattgggaatgatgaaagtagtattaa 216  Q
    |||||||||||| |||||||||||||  ||||||||| ||||||||||||||||| |||| |  |||||||| |||||| ||||||||||||| ||||||    
T  45890834 tgtataaaagaaggagagagaaaaatggttttaaatgcttttgttaagtattggttgaaagtaaaatatattgaattggaaatgatgaaagtaatattaa 45890933  T
Q  217 ttatagttataaagggagnnnnnnngtaattattattgtattga------aaataactcggttattttgggacactttattttgaaaaatggctcagtta 310  Q
    |||||||||||||||||         ||||||||||||||||||      ||||  ||| ||||||||| ||||||||||||| ||||||| ||||||||    
T  45890934 ttatagttataaaggga----aaaaataattattattgtattgaaaagtgaaattgctcagttattttgtgacactttattttaaaaaatgactcagtta 45891029  T
Q  311 ttatgggacggagggaatat 330  Q
    |||| |||||||||||||||    
T  45891030 ttataggacggagggaatat 45891049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 33584616 - 33584557
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  33584616 aaaatggaatatattgaattgggagtgatgaaagtagtattaattatagttataaaggga 33584557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 29434638 - 29434692
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggg 232  Q
    ||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||    
T  29434638 tggaatatattgaattgtgaatgatgaaagtagtattaattagagttataaaggg 29434692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 29257596 - 29257541
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| |||||||||||||    
T  29257596 tggaatatattgaattgggagtgatgaaagtaatattaattagagttataaaggga 29257541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 31581497 - 31581552
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||||||| |||||  ||||||||||||||||||||||| |||||||||    
T  31581497 aaaatggaatatattgaattgaaaatgatgaaagtagtattaattagagttataaa 31581552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 326
Target Start/End: Original strand, 2846734 - 2846885
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagggagnnnnnnngtaattattattgtattga------aaataactcgg 271  Q
    ||||||||||| |||||| | ||||||||||||||||||||| ||||||||| |||        ||||||| |  ||||||||      |||| ||||      
T  2846734 tggaatatattgaattggaattgatgaaagtagtattaattagagttataaaagga---aaaaagtaattaatgatgtattgaaaagtgaaatgactcac 2846830  T
Q  272 ttattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    ||||||||||||||||| || |  |||||| ||||||||||||||||||||||||    
T  2846831 ttattttgggacacttttttattgaaaatgactcagttattatgggacggaggga 2846885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 34963872 - 34963924
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    |||||||| ||||| |||||||||||||| ||||||||| |||||||||||||    
T  34963872 aatatatttaattgagaatgatgaaagtaatattaattagagttataaaggga 34963924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 30463069 - 30463014
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||||||| |||||  ||||||||||||| ||||||||| |||||||||    
T  30463069 aaaatggaatatattgaattgaaaatgatgaaagtaatattaattagagttataaa 30463014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 37490594 - 37490649
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| ||||||||||||| ||||||| ||||||| |||||||||||||    
T  37490594 tgtataaatgaaggagagagaaaaatgattttaagtgttttttttaagtattggtg 37490649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 44604454 - 44604508
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 171  Q
    |||||||| ||| ||||||||||||| ||||||| |||| |||||||||||||||    
T  44604454 tgtataaatgaaggagagagaaaaatgattttaagtgttcttgttaagtattggt 44604508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 48981342 - 48981277
Alignment:
Q  261 aaataactcggttattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    |||| |||| |||||||||||||||||||||||   ||| |||||  |||||||||||||||||||    
T  48981342 aaatgactcagttattttgggacactttatttttgcaaacggctcgattattatgggacggaggga 48981277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 48981705 - 48981652
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    |||||||||||||||||| |||||| |||||||| ||||||| | |||||||||    
T  48981705 tggaatatattaaattggaaatgataaaagtagtgttaattagaattataaagg 48981652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 130 - 174
Target Start/End: Original strand, 29434569 - 29434613
Alignment:
Q  130 gagagagaaaaataattttaaatgtttttgttaagtattggtgga 174  Q
    |||||||||||||| |||||| || ||||||||||||||||||||    
T  29434569 gagagagaaaaatagttttaagtgcttttgttaagtattggtgga 29434613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 37264360 - 37264312
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| || |||||||||||||||||| ||||||||    
T  37264360 gaatatattgaattgggagtggtgaaagtagtattaattagagttataa 37264312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 37496457 - 37496505
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||| || ||||||||||||||||||||| ||||||||    
T  37496457 gaatatattgaattgagagtgatgaaagtagtattaattaaagttataa 37496505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 40038085 - 40038137
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 169  Q
    |||||||| ||| || ||||||||||||||||||||| | |||||||||||||    
T  40038085 tgtataaatgaaggaaagagaaaaataattttaaatgatcttgttaagtattg 40038137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Complemental strand, 47454034 - 47453998
Alignment:
Q  197 aatgatgaaagtagtattaattatagttataaaggga 233  Q
    |||||||||||||||| ||||||||||||||||||||    
T  47454034 aatgatgaaagtagtaataattatagttataaaggga 47453998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 326
Target Start/End: Original strand, 7426033 - 7426086
Alignment:
Q  271 gttattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    |||||||||||||||||| ||||| ||| ||||||||||||| |||||||||||||    
T  7426033 gttattttgggacacttt-ttttgcaaa-tggctcagttattgtgggacggaggga 7426086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 23703969 - 23703914
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||| |||||||| |||||  |||||| |||||||||||||||| |||||||||    
T  23703969 aaaatgaaatatattgaattgaaaatgataaaagtagtattaattagagttataaa 23703914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 25778790 - 25778743
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||| |||||| | ||||||||||||||||||||| ||||||||    
T  25778790 aatatattgaattggaagtgatgaaagtagtattaattagagttataa 25778743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Original strand, 25940809 - 25940856
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttata 227  Q
    ||||||||||||||  || ||||||||||||||||||||| |||||||    
T  25940809 gaatatattaaatttagagtgatgaaagtagtattaattagagttata 25940856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 28333218 - 28333171
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttata 227  Q
    ||||||||| |||||||| ||||||||||| ||||||||| |||||||    
T  28333218 gaatatattgaattgggagtgatgaaagtaatattaattagagttata 28333171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 30463147 - 30463092
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| |||||||||||||||||| |||||| ||   ||||||||||||||||    
T  30463147 tgtataaatgaatgagagagaaaaatagttttaagtgcacttgttaagtattggtg 30463092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 36117710 - 36117655
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||  ||||||||||||  ||||||||| |||||||||||||    
T  36117710 tggaatatattgaattgaaaatgatgaaagtgatattaattaaagttataaaggga 36117655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 44604535 - 44604586
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||| | ||| || ||||||||||||||||||||| |||||||||    
T  44604535 tggaatatattgagttgagagtgatgaaagtagtattaattagagttataaa 44604586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 46288489 - 46288544
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||  | | ||||||||||||||||||| |||||||||||||    
T  46288489 tggaatatattgaattgaaagttatgaaagtagtattaattagagttataaaggga 46288544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 2846652 - 2846706
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 171  Q
    |||||||| ||| |||||||||||||| |||||| || | |||||||||||||||    
T  2846652 tgtataaatgaacgagagagaaaaatagttttaagtgctcttgttaagtattggt 2846706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 27234549 - 27234503
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttata 227  Q
    |||||||||||||| || |||||||| |||||||||||| |||||||    
T  27234549 aatatattaaattgtgagtgatgaaaatagtattaattaaagttata 27234503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 172
Target Start/End: Original strand, 29645223 - 29645265
Alignment:
Q  130 gagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    ||||||||||| ||||||||| |||| ||||||||||||||||    
T  29645223 gagagagaaaattaattttaagtgttcttgttaagtattggtg 29645265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 185 - 231
Target Start/End: Original strand, 40038176 - 40038222
Alignment:
Q  185 tattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    ||||||||| | | ||||||||||||||||||||| |||||||||||    
T  40038176 tattaaatttgaagtgatgaaagtagtattaattagagttataaagg 40038222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 18235319 - 18235266
Alignment:
Q  119 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||| ||| |||||| |||||||||||||||||   ||||||||||||||||    
T  18235319 tataaatgaaggagagaaaaaaataattttaaatgcacttgttaagtattggtg 18235266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 271 - 331
Target Start/End: Complemental strand, 33584516 - 33584455
Alignment:
Q  271 gttattttgggacactttattt-tgaaaaatggctcagttattatgggacggagggaatata 331  Q
    ||||||||| |||||||| ||| |  |||||| |||||||||||||||||||||||| ||||    
T  33584516 gttattttgagacactttttttattgaaaatgcctcagttattatgggacggagggagtata 33584455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 37157217 - 37157168
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||||||||||  ||||||||||  ||||||||||| |||||||||    
T  37157217 gaatatattaaattgaaaatgatgaaaaaagtattaattagagttataaa 37157168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 49100560 - 49100613
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    ||||||||||| |||||| |||||| ||| ||| |||||||| |||||||||||    
T  49100560 tggaatatattgaattggaaatgataaaaatagaattaattaaagttataaagg 49100613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 2842113 - 2842161
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||| ||||  || ||||||||||||||||||||||| |||||||    
T  2842113 aatatattgaatttagagtgatgaaagtagtattaattataattataaa 2842161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 5724768 - 5724816
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||| |||| | ||||| ||||||||||||||||| |||||||||    
T  5724768 aatatattgaattagaaatgaagaaagtagtattaattagagttataaa 5724816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 7425853 - 7425909
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttg-ttaagtattggtg 172  Q
    |||||||| |||||||||||||||||  |||||| |||| ||| |||||||||||||    
T  7425853 tgtataaatgaatgagagagaaaaatggttttaagtgttcttgtttaagtattggtg 7425909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 11616611 - 11616555
Alignment:
Q  178 tggaatata-ttaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||| || |||||||| || ||||||| |||||||||| |||||||||||||    
T  11616611 tggaatataattgaattgggagtggtgaaagttgtattaattagagttataaaggga 11616555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 14648979 - 14649027
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||| || ||||||||||| ||||||||| ||||||||    
T  14648979 gaatatattgaattgagagtgatgaaagtaatattaattagagttataa 14649027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 32776030 - 32775982
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| || |||||||||||||| ||| ||||||||    
T  32776030 gaatatattgaattgggagtggtgaaagtagtattatttagagttataa 32775982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 34064262 - 34064214
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||| || ||||||||||| ||||||||| ||||||||    
T  34064262 gaatatattgaattgagagtgatgaaagtaatattaattagagttataa 34064214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Original strand, 36194824 - 36194856
Alignment:
Q  297 aaatggctcagttattatgggacggagggaata 329  Q
    |||||| ||||||||||||||||||||||||||    
T  36194824 aaatggatcagttattatgggacggagggaata 36194856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 174 - 230
Target Start/End: Original strand, 38181928 - 38181984
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaag 230  Q
    ||||| ||||||||| |||||| | |  |||||||||||||||||| ||||||||||    
T  38181928 aaaatagaatatattgaattggaagttgtgaaagtagtattaattagagttataaag 38181984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 38589781 - 38589733
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| || ||||||||||||||||||  |||||||    
T  38589781 gaatatattgaattgggagtggtgaaagtagtattaattagtgttataa 38589733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 40)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 117 - 326
Target Start/End: Original strand, 39365013 - 39365226
Alignment:
Q  117 tgtataaaagaatgagagagaaaaa-taattttaaatgtttttgttaagtattggtggaaaatggaatatattaaattgggaatgatgaaagtagtatta 215  Q
    ||||||||  || |||||||||||| |  |||||| || | |||||||||||||||| ||| ||||||||||| ||||||||||||||||| ||||||||    
T  39365013 tgtataaataaaggagagagaaaaagtggttttaagtgctcttgttaagtattggtgcaaagtggaatatattgaattgggaatgatgaaaatagtatta 39365112  T
Q  216 attatagttataaagggagnnnnnnngtaattattattgtattgaaaat--aa----ctcggttattttgggacactttattttgaaaaatggctcagtt 309  Q
    |||| ||||||||||||         ||||||| |||||||||||||||  ||    ||| |||||||||||||||||| |||||  |||||||||||||    
T  39365113 attagagttataaaggg---gaaaaagtaattaatattgtattgaaaattgaaatggctcagttattttgggacacttttttttggtaaatggctcagtt 39365209  T
Q  310 attatgggacggaggga 326  Q
    |||||||||||||||||    
T  39365210 attatgggacggaggga 39365226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 54493954 - 54493902
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||||||| ||||||||||||||||||||||| |||||||||||||    
T  54493954 aatatattaaattggaaatgatgaaagtagtattaattagagttataaaggga 54493902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 54122200 - 54122255
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||    
T  54122200 tgtataaatgaaggagagagaaaaatagttttaaatgtttttgttaagtattggtg 54122255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 273 - 326
Target Start/End: Complemental strand, 12744764 - 12744711
Alignment:
Q  273 tattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    |||||||||||||||| ||||  |||||||||||||||||||||||||||||||    
T  12744764 tattttgggacactttgttttagaaaatggctcagttattatgggacggaggga 12744711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 171 - 229
Target Start/End: Complemental strand, 15280661 - 15280603
Alignment:
Q  171 tggaaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||| ||||||||||| |||||||| |||||||||||||||||||||  ||||||||    
T  15280661 tggaaagtggaatatattgaattgggagtgatgaaagtagtattaattagggttataaa 15280603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 32827365 - 32827417
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    |||||||| |||| | ||||||||||||||||||||||| |||||||||||||    
T  32827365 aatatattgaattagaaatgatgaaagtagtattaattagagttataaaggga 32827417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 41031618 - 41031570
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||| |||||| ||||||||||||||||||||||| |||||||||    
T  41031618 aatatattgaattggaaatgatgaaagtagtattaattaaagttataaa 41031570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 180 - 231
Target Start/End: Original strand, 1334841 - 1334892
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    ||||||||| |||||||| || |||||||||||||||||| |||||||||||    
T  1334841 gaatatattgaattgggagtggtgaaagtagtattaattagagttataaagg 1334892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 5245461 - 5245406
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| ||||| || |||||||||| |||||||||| |||||||||||||    
T  5245461 tggaatatattgaattgagagtgatgaaagtggtattaattagagttataaaggga 5245406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 9017932 - 9017877
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| |||||||||||||| |||||| || ||||||||||||||||||    
T  9017932 tgtataaatgaaagagagagaaaaatagttttaagtgcttttgttaagtattggtg 9017877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 33994706 - 33994651
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| || || ||||||||||||| |||||||||| |||||||||||||    
T  33994706 tggaatatattgaactgagaatgatgaaagtggtattaattagagttataaaggga 33994651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 37041934 - 37041981
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||| |||||| ||||||||||||||||||||||| ||||||||    
T  37041934 aatatattgaattggaaatgatgaaagtagtattaattagagttataa 37041981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 55415415 - 55415470
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    ||||||||  ||||||||||||||||  |||||| |||||||||||||||||||||    
T  55415415 tgtataaataaatgagagagaaaaatggttttaactgtttttgttaagtattggtg 55415470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 26832117 - 26832071
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttata 227  Q
    ||||||||||||||| | ||||||||||||||||||||| |||||||    
T  26832117 aatatattaaattggtagtgatgaaagtagtattaattagagttata 26832071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Complemental strand, 52325226 - 52325176
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||||| ||||| |||||| ||||||||||||||||| ||||||||    
T  52325226 tggaatatattgaattgagaatgacgaaagtagtattaattagagttataa 52325176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 32023161 - 32023214
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||| ||||| || ||||||||||| ||||||||| |||||||||||||    
T  32023161 gaatatattgaattgagagtgatgaaagtaatattaattagagttataaaggga 32023214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 47684810 - 47684765
Alignment:
Q  184 atattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||| |||||||| ||||||||||||||||||||| |||||||||    
T  47684810 atattgaattgggagtgatgaaagtagtattaattagagttataaa 47684765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 26134764 - 26134812
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||| |||||||| |||||||||||||| |||||| |||||||||    
T  26134764 aatatattgaattgggagtgatgaaagtagtactaattagagttataaa 26134812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 38600867 - 38600915
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||| || ||||| ||||||||||||||||||||| |||||||||    
T  38600867 aatatattgaactgggagtgatgaaagtagtattaattagagttataaa 38600915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 42547166 - 42547214
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| ||||||||||||||||||||| || |||||    
T  42547166 gaatatattgaattgggagtgatgaaagtagtattaattagagctataa 42547214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 45392136 - 45392088
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||| |||||| ||||||||||||| ||||||||| |||||||||    
T  45392136 aatatattgaattggaaatgatgaaagtaatattaattagagttataaa 45392088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 10855125 - 10855070
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| |||||||||||||| |||||| ||||||| ||| |||||||||    
T  10855125 tgtataaatgaaggagagagaaaaatagttttaagtgtttttattatgtattggtg 10855070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 11251103 - 11251158
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| |||||||||| |||||| ||||||| || | ||||||||||||||||    
T  11251103 tgtataaatgaatgagagaaaaaaatgattttaagtgctcttgttaagtattggtg 11251158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 15082055 - 15082001
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||| |||||||||||||| || |||||||| |||||||||||| |||||||||    
T  15082055 aaaatgaaatatattaaattgagagtgatgaaa-tagtattaattagagttataaa 15082001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 21296479 - 21296534
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| ||||||| ||||| |||||||||| | ||||||||||||||||    
T  21296479 tgtataaatgaaggagagaggaaaatgattttaaatgctcttgttaagtattggtg 21296534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 30261559 - 30261610
Alignment:
Q  178 tggaatatattaaatt-gggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||||| |||| |||| ||||||||||||||||||||| ||||||||    
T  30261559 tggaatatattgaatttgggagtgatgaaagtagtattaattagagttataa 30261610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 33994788 - 33994733
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| ||||||||||||||||||||| ||   ||||||||||||||||    
T  33994788 tgtataaatgaaggagagagaaaaataattttaagtgcacttgttaagtattggtg 33994733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 34081116 - 34081163
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||||||||| ||||||| |||||||||||||||| | ||||||    
T  34081116 aatatattaaattgagaatgataaaagtagtattaattaaatttataa 34081163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 39866529 - 39866584
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| || ||||||||||| |||||| || ||||||||||||||||||    
T  39866529 tgtataaatgaaggaaagagaaaaatagttttaagtgattttgttaagtattggtg 39866584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 164
Target Start/End: Original strand, 54845492 - 54845539
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaag 164  Q
    |||||||| ||| |||||||||||||| |||||| |||||||||||||    
T  54845492 tgtataaatgaaggagagagaaaaatagttttaagtgtttttgttaag 54845539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 261 - 323
Target Start/End: Original strand, 21585554 - 21585616
Alignment:
Q  261 aaataactcggttattttgggacactttattttgaaaaatggctcagttattatgggacggag 323  Q
    |||| |||| |||||||||||||||||| || |  |||||| |||||||||||||| ||||||    
T  21585554 aaatgactcagttattttgggacacttttttattgaaaatgactcagttattatggaacggag 21585616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 219
Target Start/End: Complemental strand, 39825871 - 39825833
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaatta 219  Q
    |||||||| ||||| ||||||||||||||||||||||||    
T  39825871 aatatattgaattgagaatgatgaaagtagtattaatta 39825833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Complemental strand, 1923022 - 1922993
Alignment:
Q  297 aaatggctcagttattatgggacggaggga 326  Q
    ||||||||||||||||||||||||||||||    
T  1923022 aaatggctcagttattatgggacggaggga 1922993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 9218192 - 9218143
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||| | ||||| || ||||||||||||||||||||| |||||||||    
T  9218192 gaatataatgaattgagagtgatgaaagtagtattaattagagttataaa 9218143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 46786042 - 46786091
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaag 230  Q
    |||||||| ||||||||  ||||||||||||||||| || ||||||||||    
T  46786042 aatatattgaattgggagcgatgaaagtagtattaactaaagttataaag 46786091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 233
Target Start/End: Original strand, 54021518 - 54021571
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||| |||| ||| || |||||||||||||||||| | |||||||||||    
T  54021518 gaatatattgaattcggagtggtgaaagtagtattaattagaattataaaggga 54021571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 1923137 - 1923089
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| || ||||||||||||||||||  |||||||    
T  1923137 gaatatattgaattgggagtggtgaaagtagtattaattagtgttataa 1923089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 39329810 - 39329858
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||| || ||||||||||||||||||||| | ||||||    
T  39329810 gaatatattgaattgagagtgatgaaagtagtattaattagaattataa 39329858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 48409631 - 48409583
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||| || |||||||| || |||||||||||||||||| ||||||||    
T  48409631 gaatatgttgaattgggagtggtgaaagtagtattaattagagttataa 48409583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 323
Target Start/End: Complemental strand, 48744178 - 48744126
Alignment:
Q  271 gttattttgggacactttattttgaaaaatggctcagttattatgggacggag 323  Q
    |||||||||||||  ||| ||||   |||||||||||||||||||||||||||    
T  48744178 gttattttgggactttttttttttgcaaatggctcagttattatgggacggag 48744126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 59; Significance: 6e-25; HSPs: 54)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 117 - 227
Target Start/End: Complemental strand, 2906794 - 2906684
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtggaaaatggaatatattaaattgggaatgatgaaagtagtattaa 216  Q
    |||||||| ||||||||| |||||||  ||||||||||||| |||||||||||||| | | ||||||||||||||||| || |||||||| || ||||||    
T  2906794 tgtataaatgaatgagagtgaaaaatggttttaaatgttttcgttaagtattggtgcatagtggaatatattaaattgtgagtgatgaaaataatattaa 2906695  T
Q  217 ttatagttata 227  Q
    ||| |||||||    
T  2906694 ttagagttata 2906684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 32559216 - 32559161
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||||||||||||||| ||| ||||||||||||||||||||| |||||||||    
T  32559216 aaaatggaatatattaaattaggagtgatgaaagtagtattaattagagttataaa 32559161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Original strand, 39258326 - 39258385
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||||||||||||| || ||||||||||| ||||||||| |||||||||||||    
T  39258326 aaaatggaatatattaaattgagagtgatgaaagtattattaattaaagttataaaggga 39258385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 42024259 - 42024314
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||| | |||||||||||||||||||||||||||||||||||    
T  42024259 tggaatatattgaattggaagtgatgaaagtagtattaattatagttataaaggga 42024314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 29644402 - 29644353
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||| ||||| ||||||||||||||||||||||||||||||||||    
T  29644402 gaatatattgaattgagaatgatgaaagtagtattaattatagttataaa 29644353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 38977040 - 38976985
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||  ||||||||||||||||||||||| |||||||||||||    
T  38977040 tggaatatattgaattgaaaatgatgaaagtagtattaattagagttataaaggga 38976985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 41710202 - 41710257
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| |||||||||||||    
T  41710202 tggaatatattgaattgggagtgatgaaagtaatattaattagagttataaaggga 41710257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 232
Target Start/End: Complemental strand, 39979829 - 39979775
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggg 232  Q
    ||||||||||| |||||| ||||||||||||| ||||||||| ||||||||||||    
T  39979829 tggaatatattgaattggaaatgatgaaagtaatattaattagagttataaaggg 39979775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 4360466 - 4360515
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttata 227  Q
    ||||||||||| ||||| |||||||||||||||||||||||| |||||||    
T  4360466 tggaatatattgaattgtgaatgatgaaagtagtattaattagagttata 4360515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 49306636 - 49306583
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    ||||||||||| |||| ||| ||||||||||||||||||||| |||||||||||    
T  49306636 tggaatatattgaattaggagtgatgaaagtagtattaattagagttataaagg 49306583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 40021008 - 40021056
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||||||||||||| |||||| |||||||||||||| ||||||||    
T  40021008 gaatatattaaattgggagtgatgacagtagtattaattagagttataa 40021056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 4357696 - 4357641
Alignment:
Q  119 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtgga 174  Q
    |||||| ||| |||||||||| || ||||||| |||||||||||||||||||||||    
T  4357696 tataaatgaaggagagagaaagatgattttaagtgtttttgttaagtattggtgga 4357641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 229
Target Start/End: Original strand, 26799270 - 26799325
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||| ||||||||| ||||| |||||||||||||| ||||||||| |||||||||    
T  26799270 aaaatagaatatattgaattgagaatgatgaaagtactattaattagagttataaa 26799325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 35909549 - 35909604
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| |||||| ||| |||||||||||||| ||| |||||||||||||||||    
T  35909549 tgtataaatgaatgaaagataaaaataattttaagtgtatttgttaagtattggtg 35909604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 49448887 - 49448840
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||| ||||| |||||||||||||||||||||||| ||||||||    
T  49448887 aatatattgaattgagaatgatgaaagtagtattaattagagttataa 49448840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 49812278 - 49812223
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    |||||||||||  |||||||| ||||||| |||||||||||| |||||||||||||    
T  49812278 tggaatatattgtattgggaaagatgaaaatagtattaattagagttataaaggga 49812223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 54729460 - 54729511
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtatt 168  Q
    |||||||| ||| |||||||||||||| |||||| |||||||||||||||||    
T  54729460 tgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtatt 54729511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 227
Target Start/End: Complemental strand, 18509492 - 18509446
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttata 227  Q
    |||||||| |||||||| ||||||||||| |||||||||||||||||    
T  18509492 aatatattgaattgggagtgatgaaagtattattaattatagttata 18509446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 33047461 - 33047400
Alignment:
Q  261 aaataactcggttattttgggacactttattttgaaaaatggctcagttattatgggacgga 322  Q
    |||| |||| |||||||||||||||||| ||||   |||||||||| |||||||||||||||    
T  33047461 aaatgactcagttattttgggacactttttttttgcaaatggctcaattattatgggacgga 33047400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 272 - 329
Target Start/End: Complemental strand, 42544161 - 42544105
Alignment:
Q  272 ttattttgggacactttattttgaaaaatggctcagttattatgggacggagggaata 329  Q
    |||||||  |||||||| ||||||||| |||||||||||||||| |||||||||||||    
T  42544161 ttattttatgacacttttttttgaaaa-tggctcagttattatgagacggagggaata 42544105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 228
Target Start/End: Original strand, 43335074 - 43335131
Alignment:
Q  171 tggaaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||| ||||||||||| ||||| || ||| ||||||||||||||||||||| ||||    
T  43335074 tggaaagtggaatatattgaattgagagtgaagaaagtagtattaattatagtcataa 43335131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 232
Target Start/End: Complemental strand, 3686058 - 3686006
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggg 232  Q
    ||||||||| ||||| || ||||||||||| ||||||||| ||||||||||||    
T  3686058 gaatatattgaattgagagtgatgaaagtaatattaattagagttataaaggg 3686006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 4354495 - 4354447
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||||||||| || |  |||||||||||||||||||||||||||    
T  4354495 gaatatattaaattgagagttgtgaaagtagtattaattatagttataa 4354447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Complemental strand, 4357614 - 4357566
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||| |||||||| |||||||| |||||||||||| |||||||||    
T  4357614 aatatattgaattgggagtgatgaaaatagtattaattagagttataaa 4357566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 35998178 - 35998230
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    |||||||| ||||| || || |||||||||||||||||| |||||||||||||    
T  35998178 aatatattgaattgagagtggtgaaagtagtattaattagagttataaaggga 35998230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 41436528 - 41436480
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||| || ||||| |||||||||||||||||||||||| ||||||||    
T  41436528 gaatattttgaattgcgaatgatgaaagtagtattaattagagttataa 41436480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 42185857 - 42185905
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||| ||||| || ||||||||||||||||||||| |||||||||    
T  42185857 aatatattgaattgagagtgatgaaagtagtattaattagagttataaa 42185905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 293
Target Start/End: Complemental strand, 8295075 - 8294962
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaagggagnnnnnnngtaattattattgtattga------aaataactcggtta 274  Q
    |||||||| ||||||||  |||||||||||||| ||||| |||||||||||||        ||||||| |||||||||||      |||| |||||||||    
T  8295075 aatatattgaattggga--gatgaaagtagtataaattagagttataaaggga---aaaaggtaattaatattgtattgaaaagtgaaatgactcggtta 8294981  T
Q  275 ttttgggacactttatttt 293  Q
    |||||||||||||| ||||    
T  8294980 ttttgggacactttttttt 8294962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 174
Target Start/End: Complemental strand, 17237172 - 17237117
Alignment:
Q  119 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtgga 174  Q
    |||||| ||| |||||||||||||| |||||| || |||||||||||||| |||||    
T  17237172 tataaatgaaggagagagaaaaatagttttaagtgattttgttaagtattagtgga 17237117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 185 - 232
Target Start/End: Original strand, 22496742 - 22496789
Alignment:
Q  185 tattaaattgggaatgatgaaagtagtattaattatagttataaaggg 232  Q
    |||||||||| ||  |||||||||||||||||||| ||||||||||||    
T  22496742 tattaaattgagagcgatgaaagtagtattaattagagttataaaggg 22496789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 27977278 - 27977223
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    ||||||||  ||| |||| ||||||| ||||||| |||||||||||||||||||||    
T  27977278 tgtataaataaattagagtgaaaaatgattttaagtgtttttgttaagtattggtg 27977223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 47277743 - 47277790
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||| ||||| || |||| |||||||||||||||||||||||||    
T  47277743 aatatattgaattgagagtgattaaagtagtattaattatagttataa 47277790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Complemental strand, 47846945 - 47846898
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||| |||| ||| ||||||||||||||||||||| ||||||||    
T  47846945 aatatattgaattaggagtgatgaaagtagtattaattagagttataa 47846898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 54729542 - 54729596
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| ||||| |  ||||||||||||||||||||| |||||||||||||    
T  54729542 tggaatatattgaattgagg-tgatgaaagtagtattaattagagttataaaggga 54729596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 118 - 172
Target Start/End: Original strand, 4360385 - 4360439
Alignment:
Q  118 gtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    ||||||| |||||| ||||||||||  |||||| || ||||||||||||||||||    
T  4360385 gtataaatgaatgaaagagaaaaatggttttaagtgcttttgttaagtattggtg 4360439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 22872446 - 22872496
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||||| ||||| || ||||||||||| ||||||||| ||||||||    
T  22872446 tggaatatattgaattgagagtgatgaaagtaatattaattagagttataa 22872496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 37309744 - 37309694
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    |||||||| ||||| || ||||||||||| ||||||||| |||||||||||    
T  37309744 aatatattgaattgagagtgatgaaagtaatattaattagagttataaagg 37309694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 126 - 172
Target Start/End: Original strand, 40020933 - 40020979
Alignment:
Q  126 gaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||||||||||||  |||| ||||||||||| |||||||||||    
T  40020933 gaatgagagagaaaaatggttttgaatgtttttgtcaagtattggtg 40020979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Original strand, 4360587 - 4360616
Alignment:
Q  297 aaatggctcagttattatgggacggaggga 326  Q
    ||||||||||||||||||||||||||||||    
T  4360587 aaatggctcagttattatgggacggaggga 4360616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Original strand, 18849903 - 18849967
Alignment:
Q  261 aaataactcggttattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    |||| |||| |||||||||||||| ||| |||| | |||||||||| ||||| |||||||||||||    
T  18849903 aaatgactcagttattttgggacattttttttt-acaaatggctcaattattgtgggacggaggga 18849967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 320
Target Start/End: Complemental strand, 29656520 - 29656469
Alignment:
Q  272 ttattttgggacactttattttga---aaaatggctcagttattatgggacg 320  Q
    ||||||||||||||||| |||| |   |||||||||||||||||||||||||    
T  29656520 ttattttgggacactttttttttattaaaaatggctcagttattatgggacg 29656469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 39052961 - 39053010
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||| ||||| || || |||||||||||||||||| |||||||||    
T  39052961 gaatatattgaattgagagtggtgaaagtagtattaattagagttataaa 39053010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 42544258 - 42544205
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    ||||||||||| ||||| || |||| |||||| ||||||||| |||||||||||    
T  42544258 tggaatatattgaattgtgagtgataaaagtaatattaattagagttataaagg 42544205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 9052110 - 9052158
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||  ||||||||||||||||||||||||  |||||||    
T  9052110 gaatatattgaattcagaatgatgaaagtagtattaattagtgttataa 9052158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 10099785 - 10099833
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| |  |||||||||||||||||| ||||||||    
T  10099785 gaatatattgaattgggagttgtgaaagtagtattaattagagttataa 10099833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 225
Target Start/End: Original strand, 21954491 - 21954535
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagtta 225  Q
    |||||| | ||||| ||||||||||||| ||||||||||||||||    
T  21954491 aatatactgaattgtgaatgatgaaagttgtattaattatagtta 21954535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 22020570 - 22020618
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||| ||||| ||||||||||| |||||| ||||||||    
T  22020570 gaatatattgaattgagaatggtgaaagtagtaataattagagttataa 22020618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 25250653 - 25250701
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||||||||  || |||||||| |||||||||||| ||||||||    
T  25250653 gaatatattaaattaagagtgatgaaactagtattaattagagttataa 25250701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 29550787 - 29550835
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| |  |||||||||||||||||| ||||||||    
T  29550787 gaatatattgaattgggagttgtgaaagtagtattaattagagttataa 29550835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 38319958 - 38319910
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||| || |||||||||||||||||||||  |||||||    
T  38319958 gaatatattgaattgagagtgatgaaagtagtattaattagtgttataa 38319910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 39976448 - 39976500
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaag 230  Q
    ||||||||||| ||||| || ||||||||||||||||||| |  |||||||||    
T  39976448 tggaatatattgaattgagagtgatgaaagtagtattaatcagtgttataaag 39976500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Original strand, 44020820 - 44020872
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaag 230  Q
    ||||| ||||| |||| | |||||||||||||||||| |||| ||||||||||    
T  44020820 tggaacatattgaattagaaatgatgaaagtagtattgattagagttataaag 44020872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #53
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 47787924 - 47787956
Alignment:
Q  197 aatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||||||||||||||| |||||||||    
T  47787924 aatgatgaaagtagtattaattagagttataaa 47787956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #54
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 173 - 213
Target Start/End: Complemental strand, 50714636 - 50714596
Alignment:
Q  173 gaaaatggaatatattaaattgggaatgatgaaagtagtat 213  Q
    |||| ||||||||||| ||||| ||||||||||||||||||    
T  50714636 gaaagtggaatatattgaattgagaatgatgaaagtagtat 50714596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 6e-19; HSPs: 41)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 261 - 329
Target Start/End: Original strand, 41686636 - 41686704
Alignment:
Q  261 aaataactcggttattttgggacactttattttgaaaaatggctcagttattatgggacggagggaata 329  Q
    |||| |||| ||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||||    
T  41686636 aaatgactcagttattttgggacactttatttttacaaatggctcagttattatgggatggagggaata 41686704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 178 - 326
Target Start/End: Original strand, 42575697 - 42575848
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagggagnnnnnnngtaattattattgtattgaaaa------taactcgg 271  Q
    ||||||||||| |||||| | |  |||||||||||||||||| |||||||||||||        ||||||| ||||||||||||||      |  |||||    
T  42575697 tggaatatattgaattggaagttgtgaaagtagtattaattaaagttataaaggga---aaaaagtaattaatattgtattgaaaagtgaaatggctcgg 42575793  T
Q  272 ttattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    |||||||||||||||||  ||| | |||||||||||||||| |||||||||||||    
T  42575794 ttattttgggacacttttcttttacaaatggctcagttattgtgggacggaggga 42575848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 11099536 - 11099590
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggg 232  Q
    ||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||    
T  11099536 tggaatatattgaattgggagtgatgaaagtagtattaattagagttataaaggg 11099590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 126 - 171
Target Start/End: Original strand, 41594833 - 41594878
Alignment:
Q  126 gaatgagagagaaaaataattttaaatgtttttgttaagtattggt 171  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||    
T  41594833 gaatgagagagaaaaataattttaaatgtttttgtcaagtattggt 41594878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 271 - 334
Target Start/End: Original strand, 5357972 - 5358035
Alignment:
Q  271 gttattttgggacactttattttgaaaaatggctcagttattatgggacggagggaatatatca 334  Q
    |||||||||||||||||| || | ||||||| |||||||||||||||||||| ||| |||||||    
T  5357972 gttattttgggacacttttttattaaaaatgtctcagttattatgggacggacggagtatatca 5358035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 11099454 - 11099509
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| |||||||||||||| |||||| |||||||||||||||||||||    
T  11099454 tgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtattggtg 11099509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 17243013 - 17243068
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||    
T  17243013 tggaatatattgaattgagagtgatgaaagtagtattaattagagttataaaggga 17243068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 20189941 - 20189886
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| ||||| |||||||||||||| ||||||||| |||||||||||||    
T  20189941 tggaatatattgaattgagaatgatgaaagtaatattaattagagttataaaggga 20189886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 35334585 - 35334636
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||| |||||||| ||||||||||||||||||||| |||||||||    
T  35334585 tggaatatattgaattgggagtgatgaaagtagtattaattagagttataaa 35334636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 174 - 231
Target Start/End: Complemental strand, 858388 - 858331
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    |||||| |||||||| ||||| || ||||||||||||||||||||| |||||||||||    
T  858388 aaaatgaaatatatttaattgagagtgatgaaagtagtattaattagagttataaagg 858331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 28057807 - 28057859
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 169  Q
    |||||||| ||| |||||||||||||||||||||||||  |||||||||||||    
T  28057807 tgtataaatgaaggagagagaaaaataattttaaatgtacttgttaagtattg 28057859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 4412432 - 4412377
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||| | |||||||||| |||||||||||| |||||||||||||    
T  4412432 tggaatatattgaattagaaatgatgaaaatagtattaattagagttataaaggga 4412377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 6173042 - 6173089
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||| ||||| || ||||||||||||||||||||||||||||||    
T  6173042 aatatattgaattgtgagtgatgaaagtagtattaattatagttataa 6173089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 181 - 326
Target Start/End: Complemental strand, 6610883 - 6610733
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaagggagnnnnnnngtaattattattgtattgaaaa------taactcggtta 274  Q
    |||||||| |||| ||| ||||||||||| ||||||||| |||||||||| ||        ||||||| ||||||||| ||||      | |||| ||||    
T  6610883 aatatattgaattcggagtgatgaaagtaatattaattaaagttataaagaga-aaaaaaagtaattaatattgtatttaaaagtgaaatgactcagtta 6610785  T
Q  275 ttttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    |||||||||  ||| ||||  |||||| ||||||||||||||||||||||||    
T  6610784 ttttgggactttttttttttgaaaatgactcagttattatgggacggaggga 6610733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 13135802 - 13135747
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||| ||| |||||||||||||| |||||| |||||||||||||    
T  13135802 tggaatatattgaattaggagtgatgaaagtagtagtaattaaagttataaaggga 13135747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 41184166 - 41184115
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||| ||||||||| |||||||||||||| ||||||||| |||||||||    
T  41184166 tggaataaattaaattgagaatgatgaaagtaatattaattagagttataaa 41184115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 7613753 - 7613703
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    |||||||| |||||| |||||| |||||| |||||||||||||||||||||    
T  7613753 aatatattgaattggaaatgataaaagtaatattaattatagttataaagg 7613703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 13717053 - 13717004
Alignment:
Q  184 atattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| ||||||||||| || ||||||||| |||||||||||||    
T  13717053 atattaaattgagaatgatgaaaataatattaattagagttataaaggga 13717004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 124 - 169
Target Start/End: Complemental strand, 24231134 - 24231089
Alignment:
Q  124 aagaatgagagagaaaaataattttaaatgtttttgttaagtattg 169  Q
    ||||||||||||||||||| ||||||| |||| |||||||||||||    
T  24231134 aagaatgagagagaaaaatgattttaactgttcttgttaagtattg 24231089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 180 - 221
Target Start/End: Original strand, 25344799 - 25344840
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattata 221  Q
    ||||||||| ||||| ||||||||||||||||||||||||||    
T  25344799 gaatatattgaattgagaatgatgaaagtagtattaattata 25344840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 119 - 172
Target Start/End: Original strand, 35646068 - 35646121
Alignment:
Q  119 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||| ||||||||||||||||| ||||||| || | ||||||||||||||||    
T  35646068 tataaatgaatgagagagaaaaatgattttaagtgatcttgttaagtattggtg 35646121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 72166 - 72214
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||||||||| ||| ||||||||||||||||||||| | ||||||    
T  72166 gaatatattaaattaggagtgatgaaagtagtattaattagatttataa 72214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 39212612 - 39212660
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||||||  |||||||||||||||||||| ||||||||    
T  39212612 gaatatattgaattgggagcgatgaaagtagtattaattagagttataa 39212660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 3725235 - 3725180
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||  ||||| || ||||||||||| ||||||||| |||||||||||||    
T  3725235 tggaatatatcgaattgtgagtgatgaaagtaatattaattagagttataaaggga 3725180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 120 - 167
Target Start/End: Complemental strand, 5816861 - 5816814
Alignment:
Q  120 ataaaagaatgagagagaaaaataattttaaatgtttttgttaagtat 167  Q
    ||||| ||| ||||||||||||| ||||||||||||||| ||||||||    
T  5816861 ataaatgaaggagagagaaaaatgattttaaatgtttttattaagtat 5816814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 6629455 - 6629502
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||||||||||| |||||||||||  |||||||| ||||||||    
T  6629455 aatatattaaattgggagtgatgaaagtaaaattaattagagttataa 6629502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 13422414 - 13422461
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||| ||||| || ||||||||||| ||||||||||||||||||    
T  13422414 aatatattgaattgagagtgatgaaagtaatattaattatagttataa 13422461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 271 - 326
Target Start/End: Complemental strand, 19817169 - 19817114
Alignment:
Q  271 gttattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    |||||||||||||| ||| |||| | |||||||||||||||| |||||||| ||||    
T  19817169 gttattttgggacaatttttttttacaaatggctcagttattttgggacggtggga 19817114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 33988249 - 33988194
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||||| | ||||||||| ||| ||||| |||||||||||||    
T  33988249 tggaatatattgaattgggagtaatgaaagtaatatgaattagagttataaaggga 33988194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 33988331 - 33988276
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| |||| ||||||||  |||||| |||||||||||||||||||||    
T  33988331 tgtataaatgaaggagaaagaaaaatggttttaagtgtttttgttaagtattggtg 33988276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 326
Target Start/End: Complemental strand, 7276347 - 7276282
Alignment:
Q  260 aaaataactcggttattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    |||||||||| |||||||| ||||  ||| ||||| ||| ||||||||||||| |||||||||||||    
T  7276347 aaaataactcagttattttaggacttttttttttgcaaa-tggctcagttattttgggacggaggga 7276282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 39183686 - 39183736
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||||| ||||| || ||||||||||| ||||||||| ||||||||    
T  39183686 tggaatatattgaattgagagtgatgaaagtaatattaattagagttataa 39183736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 228
Target Start/End: Complemental strand, 41268383 - 41268337
Alignment:
Q  182 atatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||| |||| ||| ||||||||||| ||||||||||||||||||    
T  41268383 atatattgaatttggagtgatgaaagtaatattaattatagttataa 41268337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 181 - 231
Target Start/End: Complemental strand, 42211379 - 42211329
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    |||||||| ||||| || ||||||||||||||||||||  |||||||||||    
T  42211379 aatatattgaattgtgagtgatgaaagtagtattaatttgagttataaagg 42211329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 42479595 - 42479541
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||| ||||||||||||||  |||||| ||||||  |||||||||||||||||    
T  42479595 aaaatgcaatatattaaattgaaaatgataaaagtaacattaattatagttataa 42479541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 227
Target Start/End: Original strand, 6735416 - 6735465
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttata 227  Q
    |||||||||||||||| | | ||||||||||| ||||||||| |||||||    
T  6735416 tggaatatattaaatttgaagtgatgaaagtaatattaattagagttata 6735465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 8692873 - 8692930
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    |||||| ||||||||||||||| | |  |||||||| ||||||||| |||||||||||    
T  8692873 aaaatgaaatatattaaattggaagttgtgaaagtaatattaattagagttataaagg 8692930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Original strand, 42871046 - 42871087
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaatta 219  Q
    ||||||||||||| |||||| |||| ||||||||||||||||    
T  42871046 tggaatatattaacttgggattgataaaagtagtattaatta 42871087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 183 - 219
Target Start/End: Complemental strand, 87017 - 86981
Alignment:
Q  183 tatattaaattgggaatgatgaaagtagtattaatta 219  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  87017 tatattaaatttggagtgatgaaagtagtattaatta 86981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 271 - 331
Target Start/End: Original strand, 8369852 - 8369912
Alignment:
Q  271 gttattttgggacactttattttgaaaaatggctcagttattatgggacggagggaatata 331  Q
    |||||||||||||||||| | ||   ||||||||||| |||| ||||||||||||| ||||    
T  8369852 gttattttgggacactttttatttgcaaatggctcagctattgtgggacggagggagtata 8369912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 33012403 - 33012351
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaag 230  Q
    ||||||||||  |||||||| |||||||||||||||||| ||  |||||||||    
T  33012403 tggaatatatagaattgggagtgatgaaagtagtattaactagcgttataaag 33012351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 42)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 29615847 - 29615792
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||||||||||||||||||||||||||| |||||||||||||    
T  29615847 tggaatatattgaattgggaatgatgaaagtagtattaattaaagttataaaggga 29615792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 44790480 - 44790535
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||    
T  44790480 tggaatatattgaattgggaatggtgaaagtagtattaattagagttataaaggga 44790535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 326
Target Start/End: Complemental strand, 5392098 - 5391946
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagggagnnnnnnngtaattattattgtattga------aaataactcgg 271  Q
    ||||||||||| |||||||| || |||||||||||||||||| |||||||||||||        ||||||| |||||||||||      |||| |||| |    
T  5392098 tggaatatattgaattgggagtgttgaaagtagtattaattagagttataaaggga--aaaaaagtaattaatattgtattgaaaagtgaaatgactcag 5392001  T
Q  272 ttattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    |||||||| |||||||| ||||   ||||||||||  |||||||| |||||||||    
T  5392000 ttattttgagacactttttttttgcaaatggctcaaatattatggaacggaggga 5391946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 32967335 - 32967388
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    ||||||||||| ||||| |||||||||||||||||||||||| |||||||||||    
T  32967335 tggaatatattgaattgagaatgatgaaagtagtattaattagagttataaagg 32967388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 178 - 230
Target Start/End: Complemental strand, 45425534 - 45425482
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaag 230  Q
    |||||||||||||||| ||||||||||||||| ||||||||| ||||||||||    
T  45425534 tggaatatattaaattaggaatgatgaaagtaatattaattagagttataaag 45425482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 38252496 - 38252551
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||| |||||||||||||||||| |||| |||||||||||||    
T  38252496 tggaatatattgaattggaaatgatgaaagtagtattgattagagttataaaggga 38252551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 27987711 - 27987657
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||| |||||||| ||||| || ||||||||||||||||||||||||||||||    
T  27987711 aaaatgaaatatattgaattgtgagtgatgaaagtagtattaattatagttataa 27987657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 174 - 228
Target Start/End: Complemental strand, 28045013 - 28044959
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||| |||||||| ||||| || ||||||||||||||||||||||||||||||    
T  28045013 aaaatgaaatatattgaattgtgagtgatgaaagtagtattaattatagttataa 28044959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 2195515 - 2195467
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  2195515 gaatatattgaattgggagtgatgaaagtagtattaattagagttataa 2195467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 7258427 - 7258475
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  7258427 gaatatattgaattgggagtgatgaaagtagtattaattagagttataa 7258475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 12653736 - 12653681
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| ||||| |||||||||||||| ||||||| | |||||||||||||    
T  12653736 tggaatatattgaattgagaatgatgaaagtaatattaatcagagttataaaggga 12653681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 29615929 - 29615874
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| ||||||||||||||||||||||||   ||||||||||||||||    
T  29615929 tgtataaatgaaggagagagaaaaataattttaaatgcacttgttaagtattggtg 29615874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 271 - 326
Target Start/End: Original strand, 38252592 - 38252647
Alignment:
Q  271 gttattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    |||||||||||||||||| ||||   ||||| ||||||||||||||||||||||||    
T  38252592 gttattttgggacactttttttttgcaaatgactcagttattatgggacggaggga 38252647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 232
Target Start/End: Original strand, 5962531 - 5962585
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggg 232  Q
    ||||||||||| |||||||| |||||||| || ||||||||| ||||||||||||    
T  5962531 tggaatatattgaattgggagtgatgaaattaatattaattagagttataaaggg 5962585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 228
Target Start/End: Original strand, 42412441 - 42412491
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||||| |||||||| ||||||||||||||||||||| || |||||    
T  42412441 tggaatatattgaattgggagtgatgaaagtagtattaattagagctataa 42412491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 272 - 326
Target Start/End: Original strand, 44790578 - 44790631
Alignment:
Q  272 ttattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    ||||||||||||||||| ||||| ||| | |||||||||||||||||||||||||    
T  44790578 ttattttgggacacttttttttgcaaa-tagctcagttattatgggacggaggga 44790631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 261 - 322
Target Start/End: Complemental strand, 138996 - 138936
Alignment:
Q  261 aaataactcggttattttgggacactttattttgaaaaatggctcagttattatgggacgga 322  Q
    |||| ||||||||||||||||||| ||| ||| | ||| |||||||||||||||||||||||    
T  138996 aaatgactcggttattttgggacattttttttcgcaaa-tggctcagttattatgggacgga 138936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 33746273 - 33746330
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    |||| |||||||||| ||||   |||||||||| ||||||||||||||||||||||||    
T  33746273 aaaaaggaatatattgaattaaaaatgatgaaaatagtattaattatagttataaagg 33746330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 27868385 - 27868433
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||| |||||||||||||||||||||||| | ||||||    
T  27868385 gaatatattgaattgagaatgatgaaagtagtattaattaaaattataa 27868433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 33826278 - 33826230
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||| ||||||||||||||||||| |||| ||||||||    
T  33826278 gaatatattgaattgagaatgatgaaagtagtattgattagagttataa 33826230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 139153 - 139098
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| |||||||||| |||||| |||||||||  | ||||||||||||||||    
T  139153 tgtataaatgaatgagagataaaaatgattttaaattctcttgttaagtattggtg 139098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 2349399 - 2349348
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||| |||||| |||| |||||||| ||||||||| |||||||||    
T  2349399 tggaatatattgaattggaaatgttgaaagtaatattaattagagttataaa 2349348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 10728980 - 10729027
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagtta 225  Q
    ||||||||||| |||||||| |||| |||||||||||||||| |||||    
T  10728980 tggaatatattgaattgggagtgattaaagtagtattaattagagtta 10729027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 180 - 227
Target Start/End: Complemental strand, 11637187 - 11637140
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttata 227  Q
    ||||||||| ||||| || || ||||||||||||||||||||||||||    
T  11637187 gaatatattgaattgagagtggtgaaagtagtattaattatagttata 11637140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 22490440 - 22490389
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||| ||||| ||||||||| ||| |||||||||| |||||||||    
T  22490440 tggaatatattgaattgagaatgatgatagttgtattaattagagttataaa 22490389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 28802816 - 28802761
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| ||||| || |||||||| || ||||||||| |||||||||||||    
T  28802816 tggaatatattgaattgagagtgatgaaaatattattaattagagttataaaggga 28802761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 39171592 - 39171541
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||| ||||| || |||||||| |||||||||||| |||||||||    
T  39171592 tggaatatattgaattgtgagtgatgaaaatagtattaattagagttataaa 39171541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 273 - 323
Target Start/End: Complemental strand, 21587227 - 21587177
Alignment:
Q  273 tattttgggacactttattttgaaaaatggctcagttattatgggacggag 323  Q
    |||||||||||||||| ||||  |||||| ||||||||||||| |||||||    
T  21587227 tattttgggacactttgtttttgaaaatgactcagttattatgagacggag 21587177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 119 - 169
Target Start/End: Complemental strand, 45197739 - 45197690
Alignment:
Q  119 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 169  Q
    |||||| |||||||||| |||||| ||||||| ||||||||||||||||||    
T  45197739 tataaatgaatgagaga-aaaaatgattttaagtgtttttgttaagtattg 45197690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 133 - 174
Target Start/End: Original strand, 138691 - 138732
Alignment:
Q  133 agagaaaaataattttaaatgtttttgttaagtattggtgga 174  Q
    |||||||||| ||||||| ||||||||||| |||||||||||    
T  138691 agagaaaaatgattttaagtgtttttgttatgtattggtgga 138732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 326
Target Start/End: Complemental strand, 2119679 - 2119614
Alignment:
Q  261 aaataactcggttattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    ||||| ||| |||||||||||||||||| |  | | ||||| |||||||||||||| |||||||||    
T  2119679 aaatagctcagttattttgggacactttttaattacaaatgactcagttattatggaacggaggga 2119614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 223
Target Start/End: Original strand, 5423222 - 5423267
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagt 223  Q
    ||||| ||||| ||||| ||||||| ||||||||||||||||||||    
T  5423222 tggaagatattgaattgagaatgataaaagtagtattaattatagt 5423267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 34287137 - 34287190
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    ||||||||||| |||| | ||||||||||||| ||||||||| | |||||||||    
T  34287137 tggaatatattgaattagaaatgatgaaagtaatattaattagaattataaagg 34287190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 8418362 - 8418410
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||| | ||||| || ||||||||||||||||||||| ||||||||    
T  8418362 gaatatactgaattgagagtgatgaaagtagtattaattagagttataa 8418410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 217
Target Start/End: Complemental strand, 9014646 - 9014610
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaat 217  Q
    |||||||| ||||| ||||||||||||||||||||||    
T  9014646 aatatattgaattgtgaatgatgaaagtagtattaat 9014610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 14690007 - 14689959
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| || ||||||||||||||||||  |||||||    
T  14690007 gaatatattgaattgggagtggtgaaagtagtattaattagtgttataa 14689959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 14748766 - 14748814
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||| ||||| ||||||||||||||||||  |||||||    
T  14748766 gaatatattgaattgagaatggtgaaagtagtattaattagtgttataa 14748814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 178 - 214
Target Start/End: Complemental strand, 21587326 - 21587290
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtatt 214  Q
    ||||||||||| |||||||| ||||||||||||||||    
T  21587326 tggaatatattgaattgggagtgatgaaagtagtatt 21587290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 28791355 - 28791307
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| |  |||||||||||||||||| ||||||||    
T  28791355 gaatatattgaattgggagttgtgaaagtagtattaattagagttataa 28791307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 120 - 172
Target Start/End: Original strand, 31410587 - 31410639
Alignment:
Q  120 ataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    ||||| ||| |||||||||||| | |||||| |||||||||||| ||||||||    
T  31410587 ataaatgaaggagagagaaaaacagttttaagtgtttttgttaaatattggtg 31410639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 32241400 - 32241452
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 169  Q
    |||||||| ||| |||||| |||||| ||||||| |||| |||||||||||||    
T  32241400 tgtataaatgaaggagagataaaaatgattttaagtgttcttgttaagtattg 32241452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 232
Target Start/End: Original strand, 44615425 - 44615477
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggg 232  Q
    ||||||||| ||||| || |||||||| || ||||||||| ||||||||||||    
T  44615425 gaatatattgaattgagagtgatgaaaataatattaattagagttataaaggg 44615477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 41)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 28839388 - 28839333
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||    
T  28839388 tggaatatattgaattgggagtgatgaaagtagtattaattatagttataaaggga 28839333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 174 - 233
Target Start/End: Complemental strand, 8327770 - 8327711
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||||||| ||||| || ||||||||||||||||||||| |||||||||||||    
T  8327770 aaaatggaatatattgaattgagagtgatgaaagtagtattaattagagttataaaggga 8327711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 11324297 - 11324242
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||    
T  11324297 tggaatatattgaattgagagtgatgaatgtagtattaattatagttataaaggga 11324242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 11482318 - 11482263
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| ||||| || ||||||| |||||||||||||||||||||||||||    
T  11482318 tggaatatattgaattgagagtgatgaatgtagtattaattatagttataaaggga 11482263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 174 - 229
Target Start/End: Complemental strand, 38664454 - 38664399
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||| ||||||||| |||| ||||||||||||||||||||||||| |||||||||    
T  38664454 aaaattgaatatattgaattaggaatgatgaaagtagtattaattagagttataaa 38664399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 51749242 - 51749297
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| |||||||||||||    
T  51749242 tggaatatattgaattgggagtgatgaaagtaatattaattagagttataaaggga 51749297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 178 - 330
Target Start/End: Original strand, 3555614 - 3555768
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagggagnnnnnnngtaattattattgtattgaaaa------taactcgg 271  Q
    ||||||||||| ||||||||  |||||||||||||||||||| ||||||||| |||        ||||||| |  |||| ||||||      ||||||      
T  3555614 tggaatatattgaattgggatagatgaaagtagtattaattagagttataaaagga---aaaaagtaattaatgatgtaatgaaaaatgaaataactcac 3555710  T
Q  272 ttattttgggacactttattttgaaaaatggctcagttattatgggacggagggaatat 330  Q
    ||||||||||||||||| | || ||||||| |||||||||||||||||||||| |||||    
T  3555711 ttattttgggacactttttatt-aaaaatgactcagttattatgggacggaggaaatat 3555768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 8327848 - 8327794
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 171  Q
    |||||||| ||||||||||||||||||||||||| || | |||||||||||||||    
T  8327848 tgtataaatgaatgagagagaaaaataattttaagtgctcttgttaagtattggt 8327794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 184 - 229
Target Start/End: Complemental strand, 42309475 - 42309430
Alignment:
Q  184 atattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||||| ||||||||||||||||||||||||| |||||||||    
T  42309475 atattaaatttggaatgatgaaagtagtattaattagagttataaa 42309430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 26756022 - 26755970
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    |||||||| |||||  ||||||||||||||||||||||| |||||||||||||    
T  26756022 aatatattgaattgaaaatgatgaaagtagtattaattagagttataaaggga 26755970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 181 - 233
Target Start/End: Complemental strand, 27698858 - 27698806
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    |||||||| ||||| |||||||||||||| ||||||||| |||||||||||||    
T  27698858 aatatattgaattgagaatgatgaaagtaatattaattagagttataaaggga 27698806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 29225800 - 29225752
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| ||||||||||||||||||||| ||||||||    
T  29225800 gaatatattgaattgggagtgatgaaagtagtattaattagagttataa 29225752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 32587896 - 32587844
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 169  Q
    |||||||| ||| | ||||||||||||||||||| ||||||||||||||||||    
T  32587896 tgtataaatgaaggtgagagaaaaataattttaagtgtttttgttaagtattg 32587844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 42926265 - 42926210
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| |||||| |||||||||| ||||||| |||||||||||||||| ||||    
T  42926265 tgtataaatgaatgaaagagaaaaatgattttaagtgtttttgttaagtatcggtg 42926210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 45889307 - 45889358
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||| ||||  |||||||||||||||||||||||| |||||||||    
T  45889307 tggaatatattgaattatgaatgatgaaagtagtattaattagagttataaa 45889358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 46536389 - 46536334
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||||||||  || ||||||||||||||||||||| ||||||| |||||    
T  46536389 tggaatatattaaattaagagtgatgaaagtagtattaattagagttatagaggga 46536334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 178 - 321
Target Start/End: Complemental strand, 8773291 - 8773141
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagggagnnnnnnn-gtaattattattgtattgaaaa------taactcg 270  Q
    |||||||||||||| | | | ||||||||||||||||||||| ||||||||| |||         ||||||| |||| |||||||||      || |||     
T  8773291 tggaatatattaaactagaagtgatgaaagtagtattaattagagttataaaaggaaaaaaaaaagtaattaatattctattgaaaaatgaaatagctca 8773192  T
Q  271 gttattttgggacactttattttgaaaaatggctcagttattatgggacgg 321  Q
    |||||||||||||||||| ||||   ||||| |||||||||||||||||||    
T  8773191 gttattttgggacactttttttttgcaaatgactcagttattatgggacgg 8773141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 117 - 171
Target Start/End: Complemental strand, 28839470 - 28839416
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 171  Q
    |||||||| ||| |||||||||||||| ||||||||| | |||||||||||||||    
T  28839470 tgtataaatgaaggagagagaaaaatagttttaaatgctcttgttaagtattggt 28839416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 117 - 174
Target Start/End: Original strand, 36467172 - 36467229
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtgga 174  Q
    |||||||| |||||||||||||||||| |||||| ||   ||||||||||||||||||    
T  36467172 tgtataaatgaatgagagagaaaaatagttttaagtgcacttgttaagtattggtgga 36467229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 46496067 - 46496014
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    ||||||||||| |||| ||  ||||||||||||||||||||| |||||||||||    
T  46496067 tggaatatattgaattaggcgtgatgaaagtagtattaattagagttataaagg 46496014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 231
Target Start/End: Original strand, 49494222 - 49494275
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    ||||||||||| |||| | ||||||||||||| ||||||||| |||||||||||    
T  49494222 tggaatatattgaattagaaatgatgaaagtaatattaattaaagttataaagg 49494275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 197 - 233
Target Start/End: Original strand, 19532997 - 19533033
Alignment:
Q  197 aatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||||||||||||||| |||||||||||||    
T  19532997 aatgatgaaagtagtattaattaaagttataaaggga 19533033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 25842646 - 25842598
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||||  |||| |||||||||||||||| ||||||||||||||||    
T  25842646 gaatatattgcattgagaatgatgaaagtagtgttaattatagttataa 25842598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 35622840 - 35622888
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||| ||| ||||||||||||||||||| ||||||||    
T  35622840 gaatatattgaattggcaattatgaaagtagtattaattagagttataa 35622888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 36232850 - 36232898
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||| |||| |||||||||||||||||| ||||||||    
T  36232850 gaatatattgaattggaaatggtgaaagtagtattaattagagttataa 36232898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 46273291 - 46273239
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 169  Q
    |||||||| |||| ||| |||||||||||||| ||||||||||| ||||||||    
T  46273291 tgtataaatgaataagatagaaaaataattttgaatgtttttgtcaagtattg 46273239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 181 - 229
Target Start/End: Original strand, 50267500 - 50267548
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||||||| |||||||||||||||||||| ||||||||| | |||||||    
T  50267500 aatatattgaattgggaatgatgaaagtaatattaattagaattataaa 50267548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 232
Target Start/End: Original strand, 36467257 - 36467308
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaaggg 232  Q
    |||||||| |||||| |||||||||| |||||||||||  ||||||||||||    
T  36467257 aatatattgaattggaaatgatgaaaatagtattaatttgagttataaaggg 36467308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Original strand, 48242649 - 48242700
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||| ||||| ||||||| |||||| ||||||||| |||||||||    
T  48242649 tggaatatattgaattgagaatgataaaagtaatattaattaaagttataaa 48242700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 52830391 - 52830446
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| ||||||||||||||||||| | ||  |||||||||||||||||    
T  52830391 tgtataaatgaaggagagagaaaaataattttgagtgcatttgttaagtattggtg 52830446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 174 - 228
Target Start/End: Original strand, 10587636 - 10587690
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||| ||||||||| ||||| || |||||||||||||||||||||  |||||||    
T  10587636 aaaatagaatatattgaattgagagtgatgaaagtagtattaattagtgttataa 10587690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 117 - 171
Target Start/End: Original strand, 51749160 - 51749214
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggt 171  Q
    |||||||| ||| ||||||||||| | ||||||| |||| |||||||||||||||    
T  51749160 tgtataaatgaaggagagagaaaactgattttaagtgttcttgttaagtattggt 51749214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 168
Target Start/End: Complemental strand, 6787376 - 6787327
Alignment:
Q  119 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtatt 168  Q
    |||||| ||| |||||||||||||| |||||||||| |||||||| ||||    
T  6787376 tataaacgaaagagagagaaaaatagttttaaatgtatttgttaaatatt 6787327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Original strand, 17724775 - 17724824
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    |||| |||| |||||||| |||||||| |||||||||||| |||||||||    
T  17724775 gaatttattgaattgggagtgatgaaaatagtattaattagagttataaa 17724824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 178 - 219
Target Start/End: Complemental strand, 27831895 - 27831854
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaatta 219  Q
    ||||| ||||| |||||||| |||||||||||||||||||||    
T  27831895 tggaagatattgaattgggagtgatgaaagtagtattaatta 27831854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 181 - 230
Target Start/End: Original strand, 28277100 - 28277149
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaag 230  Q
    |||||||| |||||  |||||||||||| |||||||||| ||||||||||    
T  28277100 aatatattgaattgaaaatgatgaaagtggtattaattagagttataaag 28277149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 297 - 326
Target Start/End: Original strand, 29225588 - 29225617
Alignment:
Q  297 aaatggctcagttattatgggacggaggga 326  Q
    ||||||||||||||||||||||||||||||    
T  29225588 aaatggctcagttattatgggacggaggga 29225617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 181 - 233
Target Start/End: Original strand, 7785336 - 7785388
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    |||||||| ||||| ||  ||| |||||||||||||||| |||||||||||||    
T  7785336 aatatattgaattgagagcgataaaagtagtattaattagagttataaaggga 7785388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 188 - 232
Target Start/End: Complemental strand, 7787716 - 7787672
Alignment:
Q  188 taaattgggaatgatgaaagtagtattaattatagttataaaggg 232  Q
    |||| ||| ||||||| || |||||||||||||||||||||||||    
T  7787716 taaagtggaaatgatggaaatagtattaattatagttataaaggg 7787672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 297 - 329
Target Start/End: Complemental strand, 26583655 - 26583623
Alignment:
Q  297 aaatggctcagttattatgggacggagggaata 329  Q
    |||| ||||||||||||||||||||||||||||    
T  26583655 aaatagctcagttattatgggacggagggaata 26583623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 29756203 - 29756251
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| || ||||||||||||||||||  |||||||    
T  29756203 gaatatattgaattgggagtggtgaaagtagtattaattagtgttataa 29756251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 45; Significance: 1e-16; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 178 - 332
Target Start/End: Complemental strand, 15081472 - 15081315
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagggagnnnnnnngtaattattattgtattga------aaataactcgg 271  Q
    ||||||||||| |||||| ||| ||||||||||||||||||| |||||||||||||        ||||||| |||||||||||      ||||   || |    
T  15081472 tggaatatattgaattggaaattatgaaagtagtattaattagagttataaaggga---aaaaagtaattaatattgtattgaaaagtgaaattgttcag 15081376  T
Q  272 ttattttgggacactttattttgaaaaatggctcagttattatgggacggagggaatatat 332  Q
    ||||||||||||||||| ||||   | ||| ||||||||||||||||||||| ||||||||    
T  15081375 ttattttgggacacttttttttcgcagatgactcagttattatgggacggagagaatatat 15081315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 174 - 326
Target Start/End: Complemental strand, 33109426 - 33109271
Alignment:
Q  174 aaaatggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagggagnnnnnnngtaattattattgtattgaaaa-taa-----c 267  Q
    |||||| |||||||| ||||| |||||||||||||||||||||||| ||||||||| |||         |||||| |||||||||||||| |||     |    
T  33109426 aaaatgaaatatattgaattgagaatgatgaaagtagtattaattagagttataaatgga---aaaaaataattagtattgtattgaaaagtaaaatggc 33109330  T
Q  268 tcggttattttgggacactttattttgaaaaatggctcagttattatgggacggaggga 326  Q
    || ||| |||||| ||||||| ||||   |||| |||||||||||||||||||||||||    
T  33109329 tcagttgttttggaacactttttttttgcaaatagctcagttattatgggacggaggga 33109271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 30064007 - 30064062
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||||| ||||||||||| ||||||||| |||||||||||||    
T  30064007 tggaatatattgaattgggagtgatgaaagtaatattaattagagttataaaggga 30064062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 178 - 223
Target Start/End: Complemental strand, 117128 - 117083
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagt 223  Q
    ||||||||||| ||||| || |||||||||||||||||||||||||    
T  117128 tggaatatattgaattgagagtgatgaaagtagtattaattatagt 117083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 33018004 - 33018052
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| || |||||||||||||||||| ||||||||    
T  33018004 gaatatattgaattgggagtggtgaaagtagtattaattagagttataa 33018052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 34441938 - 34441890
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||||||||  || ||||||||||||||||||||| ||||||||    
T  34441938 gaatatattaaattaagagtgatgaaagtagtattaattaaagttataa 34441890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 181 - 228
Target Start/End: Original strand, 2310349 - 2310396
Alignment:
Q  181 aatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||| |||||||| |||||||||||||||||||||  |||||||    
T  2310349 aatatattgaattgggagtgatgaaagtagtattaattaatgttataa 2310396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Original strand, 7301138 - 7301193
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| |||||  ||||||||||||| ||||| ||| |||||||||||||    
T  7301138 tggaatatattgaattgaaaatgatgaaagtaatattagttagagttataaaggga 7301193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 31265910 - 31265855
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||| |||||||||||||| |||||| || | ||||||||||||||||    
T  31265910 tgtataaatgaaggagagagaaaaatagttttaagtgctcttgttaagtattggtg 31265855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 172
Target Start/End: Complemental strand, 2658030 - 2657977
Alignment:
Q  119 tataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||| |||| |||||||||||| ||||||| |  ||||||||||||||||||    
T  2658030 tataaatgaataagagagaaaaatgattttaagtacttttgttaagtattggtg 2657977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Complemental strand, 4552956 - 4552908
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    |||||||||||||||||| || |||||||| |||||||||  |||||||    
T  4552956 gaatatattaaattgggagtggtgaaagtaatattaattagtgttataa 4552908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 117 - 169
Target Start/End: Original strand, 7739494 - 7739546
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattg 169  Q
    |||||||  ||| |||| ||||||||| ||| |||||||||||||||||||||    
T  7739494 tgtataagtgaaagagatagaaaaatagtttaaaatgtttttgttaagtattg 7739546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 15321285 - 15321333
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||| ||||| ||||||||||||||||||  |||||||    
T  15321285 gaatatattgaattgagaatgttgaaagtagtattaattagtgttataa 15321333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 15371923 - 15371971
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| |||||||| || ||||||||||||||||||  |||||||    
T  15371923 gaatatattgaattgggagtggtgaaagtagtattaattagtgttataa 15371971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 290 - 326
Target Start/End: Original strand, 33921642 - 33921678
Alignment:
Q  290 ttttgaaaaatggctcagttattatgggacggaggga 326  Q
    |||| ||||||||||||||||||| ||||||||||||    
T  33921642 tttttaaaaatggctcagttattacgggacggaggga 33921678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 178 - 231
Target Start/End: Complemental strand, 8936 - 8883
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaagg 231  Q
    ||||||||||| ||||| |||||||||||||| ||||||||| |||||||||||    
T  8936 tggaatatattgaattgagaatgatgaaagtaatattaattagagttataaagg 8883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 14505 - 14454
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||| |||||  ||||||||||||||||||||||| |||||||||    
T  14505 tggaatatattgaattgaaaatgatgaaagtagtattaattagagttataaa 14454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 394827 - 394772
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||| | ||||| || ||||||||||||||||||||| |||||||||||||    
T  394827 tggaatatagtgaattgagagtgatgaaagtagtattaattagagttataaaggga 394772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 117 - 165
Target Start/End: Complemental strand, 8997 - 8949
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagt 165  Q
    |||||||| |||  |||||||||||||||||||| ||||||||||||||    
T  8997 tgtataaatgaagaagagagaaaaataattttaagtgtttttgttaagt 8949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 190 - 233
Target Start/End: Original strand, 9619 - 9662
Alignment:
Q  190 aattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||| || ||||||||||||||||||||| |||||||||||||    
T  9619 aattgagagtgatgaaagtagtattaattagagttataaaggga 9662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 26371 - 26320
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||| |||||| |||||| |||||| ||||||||| |||||||||    
T  26371 tggaatatattgaattggaaatgataaaagtaatattaattagagttataaa 26320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 233
Target Start/End: Complemental strand, 98874 - 98819
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaaggga 233  Q
    ||||||||||| ||||| || |||||||| || ||||||||| |||||||||||||    
T  98874 tggaatatattgaattgagagtgatgaaaataatattaattagagttataaaggga 98819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 117 - 172
Target Start/End: Complemental strand, 98956 - 98901
Alignment:
Q  117 tgtataaaagaatgagagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||| ||||||||||||||||| ||||||| || | ||| ||||||||||||    
T  98956 tgtataaatgaatgagagagaaaaatgattttaagtgctcttgataagtattggtg 98901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 321
Target Start/End: Complemental strand, 98022 - 97962
Alignment:
Q  261 aaataactcggttattttgggacactttattttgaaaaatggctcagttattatgggacgg 321  Q
    |||| |||||||||||||| |||||||  ||||   ||||| |||||||||||||||||||    
T  98022 aaatgactcggttattttgagacacttattttttgcaaatgactcagttattatgggacgg 97962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 178 - 229
Target Start/End: Complemental strand, 26662 - 26611
Alignment:
Q  178 tggaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||||| ||||| || ||||||||||||||||||||| | |||||||    
T  26662 tggaatatattgaattgcgagtgatgaaagtagtattaattagaattataaa 26611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 180 - 229
Target Start/End: Complemental strand, 5865 - 5816
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataaa 229  Q
    ||||||||| ||||| || || |||||||||||||||||| |||||||||    
T  5865 gaatatattgaattgagagtggtgaaagtagtattaattaaagttataaa 5816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 172
Target Start/End: Original strand, 352451 - 352492
Alignment:
Q  131 agagagaaaaataattttaaatgtttttgttaagtattggtg 172  Q
    |||||||||||||||||| | ||| |||||||||||||||||    
T  352451 agagagaaaaataattttgagtgtctttgttaagtattggtg 352492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 180 - 228
Target Start/End: Original strand, 12496 - 12544
Alignment:
Q  180 gaatatattaaattgggaatgatgaaagtagtattaattatagttataa 228  Q
    ||||||||| ||||  ||||| |||||||||||||||||| ||||||||    
T  12496 gaatatattgaattaagaatggtgaaagtagtattaattagagttataa 12544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University