View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12451_low_13 (Length: 299)
Name: NF12451_low_13
Description: NF12451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12451_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 12 - 289
Target Start/End: Complemental strand, 49060963 - 49060686
Alignment:
| Q |
12 |
aacctgtgagattagaggagctaaagaacatttggcagcatgtaattaggaagaagaagtctgatccaaaggagaaaaacaaaaccagtaaaccagacaa |
111 |
Q |
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| T |
49060963 |
aacctgtgagattagaggagctaaagaacatttggcagcatgtaattaggaagaagaagtctgatccaaaggagaaaaacaaaaccagtaaaccagacaa |
49060864 |
T |
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| Q |
112 |
aactacttctgacagtggcagtggactaagatctgcaggagcagaaaattcagatgaaaatggaaagctgactaagaaaagaaaggatcaggatgaagag |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49060863 |
aactacttctgacagtggcagtggactaagatctgcaggagcagaaaattcagatgaaaatggaaagctgactaagaaaagaaaggatcaggatgaagac |
49060764 |
T |
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| Q |
212 |
gaagacgaggataaagagaatggtaatgacaatgaggacccatcagctcagaagaagcctcgggttgtttggtctgtg |
289 |
Q |
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| T |
49060763 |
gaagacgaggataaagagaatggtaatgacaatgaggacccatcagctcagaagaagcctcgggttgtttggtctgtg |
49060686 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 197 - 288
Target Start/End: Complemental strand, 47274489 - 47274398
Alignment:
| Q |
197 |
gatcaggatgaagaggaagacgaggataaagagaatggtaatgacaatgaggacccatcagctcagaagaagcctcgggttgtttggtctgt |
288 |
Q |
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| T |
47274489 |
gatcaggatgaagacaaagatgaggataaagagaatggtcatgacaatgaggacccatgagctcagaagaagccccctgttgtttggtctgt |
47274398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 12 - 70
Target Start/End: Complemental strand, 47275162 - 47275104
Alignment:
| Q |
12 |
aacctgtgagattagaggagctaaagaacatttggcagcatgtaattaggaagaagaag |
70 |
Q |
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| T |
47275162 |
aacctgtgagattacaggagctaaagaccatttggcagcatgtaattcggaagaagaag |
47275104 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 12 - 72
Target Start/End: Complemental strand, 47280847 - 47280787
Alignment:
| Q |
12 |
aacctgtgagattagaggagctaaagaacatttggcagcatgtaattaggaagaagaagtc |
72 |
Q |
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||||||||||||| |||||||||| |||||||||||||||||||||| |||| ||| |||| |
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| T |
47280847 |
aacctgtgagattggaggagctaaggaacatttggcagcatgtaattcggaataaggagtc |
47280787 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 237 - 285
Target Start/End: Complemental strand, 48870087 - 48870039
Alignment:
| Q |
237 |
atgacaatgaggacccatcagctcagaagaagcctcgggttgtttggtc |
285 |
Q |
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|||||||||| || ||| |||| |||||||||||||| ||||||||||| |
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| T |
48870087 |
atgacaatgatgatccaacagcacagaagaagcctcgagttgtttggtc |
48870039 |
T |
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