View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12451_low_19 (Length: 221)
Name: NF12451_low_19
Description: NF12451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12451_low_19 |
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Alignment Details
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 42205181 - 42205367
Alignment:
| Q |
19 |
gctatgttcacagagtaggggaatctattactgcaaaaggaaaaaacataacaaagtcaaaagacaacaatacatatttgattttgaaaaattaattact |
118 |
Q |
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| T |
42205181 |
gctatgttcacagagtaggggaatctattactgcaaaaggaaaaaacataacaaagtcaaaagacaacaatacatatttgattttgaaaaattaattact |
42205280 |
T |
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| Q |
119 |
tcatgaataccttatccattccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaact |
205 |
Q |
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| T |
42205281 |
tcatgaataccttatccattccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaact |
42205367 |
T |
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Target: chr1; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 205
Target Start/End: Original strand, 42214049 - 42214235
Alignment:
| Q |
19 |
gctatgttcacagagtaggggaatctattactgcaaaaggaaaaaacataacaaagtcaaaagacaacaatacatatttgattttgaaaaattaattact |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42214049 |
gctatgttcacagagtaggggaatctattactgcaaaaggaaaaaacataacaaagtcaaaagacaacaatacatatttgattttgaaaaattaattact |
42214148 |
T |
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| Q |
119 |
tcatgaataccttatccattccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaact |
205 |
Q |
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| T |
42214149 |
tcatgaataccttatccattccttgcataaagggcacctttgtccagccatatatatggaagattgcaaacactttttgcaaaaact |
42214235 |
T |
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