View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12451_low_3 (Length: 564)
Name: NF12451_low_3
Description: NF12451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12451_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 334; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 18 - 363
Target Start/End: Original strand, 7926956 - 7927301
Alignment:
| Q |
18 |
tgacaatgaggattagaatttggaggaatgggtgagtgagaaaaacgagtgagagttgatgagattttgagtggtttttgaagagggttgtagtggtaat |
117 |
Q |
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|||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7926956 |
tgactatgaggattcgaatttggaggaatgggtgagtgagaaaaacgagtgagagttgatgagattttgagtggtttttgaagagggttgtagtggtaat |
7927055 |
T |
|
| Q |
118 |
ggtgagaagggaaaatgggtgtggaggttttggtttttgaggctaagcggtgacccagaagggaagggttgaagattttgagacgagcttccatggtgga |
217 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7927056 |
ggtgtgaagggaaaatgggtgtggaggttttggtttttgaggctaagcggtgacccagaagggaagggttgaagattttgagacgagcttccatggtgga |
7927155 |
T |
|
| Q |
218 |
agatggtgatgggaagaaggagagtgtgagtttgagattcatcacaaagtgaaatcaaattagtgagactttgatttctacgccaatgagcgggataatt |
317 |
Q |
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| T |
7927156 |
agatggtgatgggaagaaggagagtgtgagtttgagattcatcacaaagtgaaatcaaattagtgagactttgatttctacgccaatgagcgggataatt |
7927255 |
T |
|
| Q |
318 |
ttcccaccttcctgggctgttattacccaaccaccctagtaaataa |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7927256 |
ttcccaccttcctgggctgttattacccaaccaccctagtaaataa |
7927301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 367 - 483
Target Start/End: Complemental strand, 30964797 - 30964673
Alignment:
| Q |
367 |
atgagtcctgataggtgaacacacttagctggcaacacactctgatacaccc----atgg----tagttttggtattttatcttttaatgaagggtagtt |
458 |
Q |
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| T |
30964797 |
atgagtcctgataggtgaacacacttagctggcaacacactcttgtacacctccatatggaggatagttttggtatttcatcttttaatgaagggtagtt |
30964698 |
T |
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| Q |
459 |
tagtcaaaactcatataaaccttga |
483 |
Q |
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| T |
30964697 |
tagtcaaaactcatataaaccttga |
30964673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 432 - 478
Target Start/End: Complemental strand, 35836349 - 35836303
Alignment:
| Q |
432 |
tattttatcttttaatgaagggtagtttagtcaaaactcatataaac |
478 |
Q |
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||||| |||||||||||||||||||||| |||| || |||||||||| |
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| T |
35836349 |
tatttcatcttttaatgaagggtagttttgtcataattcatataaac |
35836303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 1e-30; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 369 - 483
Target Start/End: Original strand, 26144947 - 26145069
Alignment:
| Q |
369 |
gagtcctgataggtgaacacacttagctggcaacacactctgatacaccc----atgg----tagttttggtattttatcttttaatgaagggtagttta |
460 |
Q |
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|||||||||| |||||||||||||||||||||||||||||| |||||| |||| |||||||||||||| ||||||||||||||||||||||| |
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| T |
26144947 |
gagtcctgatgggtgaacacacttagctggcaacacactcttgtacacctccatatggaggatagttttggtatttcatcttttaatgaagggtagttta |
26145046 |
T |
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| Q |
461 |
gtcaaaactcatataaaccttga |
483 |
Q |
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| T |
26145047 |
gtcaaaactcatataaaccttga |
26145069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 6e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 421 - 478
Target Start/End: Complemental strand, 29633737 - 29633680
Alignment:
| Q |
421 |
ggtagttttggtattttatcttttaatgaagggtagtttagtcaaaactcatataaac |
478 |
Q |
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|||||||||||||||| |||||||||||||||||||||| |||||||| ||||||||| |
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| T |
29633737 |
ggtagttttggtatttcatcttttaatgaagggtagttttgtcaaaacccatataaac |
29633680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 376 - 482
Target Start/End: Complemental strand, 51946312 - 51946197
Alignment:
| Q |
376 |
gataggtgaacacacttagctggcaacacactctgatacaccc---------atggtagttttggtattttatcttttaatgaagggtagtttagtcaaa |
466 |
Q |
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|||||||||||||||||||| ||||||||| || |||||||| ||| ||||||| |||||| ||||||||||||||||||||| |||||| |
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| T |
51946312 |
gataggtgaacacacttagcatgcaacacacccttatacacccccatgtggcatgatagttttagtatttcttcttttaatgaagggtagttttgtcaaa |
51946213 |
T |
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| Q |
467 |
actcatataaaccttg |
482 |
Q |
| |
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|| ||||||||||||| |
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| T |
51946212 |
acccatataaaccttg |
51946197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 369 - 476
Target Start/End: Complemental strand, 41076595 - 41076478
Alignment:
| Q |
369 |
gagtcctgataggtgaacacacttagctggcaacacactctgatacaccc----------atggtagttttggtattttatcttttaatgaagggtagtt |
458 |
Q |
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||||||||||||||||||| ||||| |||||||||||||| ||||||| | |||||||||||||||| | ||||||||||||||||||| |
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| T |
41076595 |
gagtcctgataggtgaacatgcttaggtggcaacacactcttgtacaccccccatgtggcagggtagttttggtatttcaccttttaatgaagggtagtt |
41076496 |
T |
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| Q |
459 |
tagtcaaaactcatataa |
476 |
Q |
| |
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| |||||||| ||||||| |
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| T |
41076495 |
ttgtcaaaacccatataa |
41076478 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 369 - 476
Target Start/End: Complemental strand, 42009285 - 42009169
Alignment:
| Q |
369 |
gagtcctgataggtgaacacacttagctggcaacacactctgataca--cccatg-------gtagttttggtattttatcttttaatgaagggtagttt |
459 |
Q |
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||||||||||||||||||| ||||| |||||||||||||| |||| |||||| ||||||| ||||||| | |||||||||||||||||||| |
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| T |
42009285 |
gagtcctgataggtgaacatgcttaggtggcaacacactcttgtacatccccatgtggcagggtagtttcggtatttcaccttttaatgaagggtagttt |
42009186 |
T |
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| Q |
460 |
agtcaaaactcatataa |
476 |
Q |
| |
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|||||||| ||||||| |
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| T |
42009185 |
tgtcaaaacccatataa |
42009169 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 431 - 482
Target Start/End: Original strand, 6102022 - 6102073
Alignment:
| Q |
431 |
gtattttatcttttaatgaagggtagtttagtcaaaactcatataaaccttg |
482 |
Q |
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|||||| |||||||||||||| ||||||| |||||||| ||||||||||||| |
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| T |
6102022 |
gtatttcatcttttaatgaagagtagttttgtcaaaacccatataaaccttg |
6102073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 369 - 418
Target Start/End: Original strand, 6100982 - 6101031
Alignment:
| Q |
369 |
gagtcctgataggtgaacacacttagctggcaacacactctgatacaccc |
418 |
Q |
| |
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|||| |||||||||||||||| |||||||||||||| | || |||||||| |
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| T |
6100982 |
gagtgctgataggtgaacacatttagctggcaacacccccttatacaccc |
6101031 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 441 - 482
Target Start/End: Complemental strand, 31047240 - 31047199
Alignment:
| Q |
441 |
ttttaatgaagggtagtttagtcaaaactcatataaaccttg |
482 |
Q |
| |
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||||||||||||||||||| |||||||| ||||||||||||| |
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| T |
31047240 |
ttttaatgaagggtagttttgtcaaaacccatataaaccttg |
31047199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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