View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12451_low_4 (Length: 524)

Name: NF12451_low_4
Description: NF12451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12451_low_4
NF12451_low_4
[»] chr8 (2 HSPs)
chr8 (1-505)||(15755486-15756002)
chr8 (1-324)||(18945567-18945889)
[»] scaffold0384 (1 HSPs)
scaffold0384 (1-369)||(972-1340)
[»] chr6 (9 HSPs)
chr6 (270-507)||(17118244-17118497)
chr6 (192-369)||(17118516-17118693)
chr6 (4-303)||(13139401-13139713)
chr6 (241-351)||(6340628-6340738)
chr6 (373-507)||(13139790-13139924)
chr6 (420-482)||(26628696-26628758)
chr6 (420-482)||(26734672-26734734)
chr6 (159-225)||(20071689-20071755)
chr6 (2-111)||(17118711-17118820)
[»] chr4 (3 HSPs)
chr4 (121-354)||(17127986-17128219)
chr4 (11-354)||(19805856-19806199)
chr4 (282-334)||(16985044-16985096)
[»] chr2 (3 HSPs)
chr2 (77-352)||(13129009-13129284)
chr2 (241-351)||(28015657-28015767)
chr2 (241-351)||(20485423-20485533)
[»] chr3 (2 HSPs)
chr3 (77-333)||(55308395-55308651)
chr3 (244-352)||(8834467-8834575)
[»] chr5 (2 HSPs)
chr5 (77-352)||(26470317-26470592)
chr5 (77-354)||(16992425-16992702)


Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 505
Target Start/End: Complemental strand, 15756002 - 15755486
Alignment:
Q  1 cacaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgacaggga 100  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||| ||||||||| |||||||||||| |||||||||    
T  15756002 cacaactccaaaattatcattcaaaccagtgagaaattgaatgatttggtcctccaaacgaaaatttcgagctgatctcatggattcacaacgacaggga 15755903  T
Q  101 tgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttccttgtt 200  Q
    ||||||||||| || |||| |||||||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||    
T  15755902 tgaggacaagtgcacataggcataggacaatgagaattaagctcttcccaaagtgatttcaactcagtgaagtattcaagcacaaacttggttccttgtt 15755803  T
Q  201 tcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatg 300  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15755802 tcaaattgttgatagtagtacataatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatg 15755703  T
Q  301 aaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttacaacg----------------ttcaaatcatca 384  Q
    ||||||||||||||||||||||| |||||||||| ||| ||||||||||||||||| |||| ||||||||||                ||||||||||||    
T  15755702 aaatacgatggtttgagcgatttaaggagaaacagaattcagaatccaagaatggatcaaggagttacaacgttcccaaacacttcgattcaaatcatca 15755603  T
Q  385 agaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagttagaaccgt 484  Q
    ||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||    ||||||||||||||||||    
T  15755602 agaggagggattaggatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcgtttcatagaatgatgc----cgaggtagttagaaccgt 15755507  T
Q  485 caagaagaggcgtaactaaca 505  Q
    |||||||||| ||||||||||    
T  15755506 caagaagaggtgtaactaaca 15755486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 324
Target Start/End: Original strand, 18945567 - 18945889
Alignment:
Q  1 cacaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgacaggga 100  Q
    |||||||  |||||| |||||||||| ||||||||||||||| | ||| || ||||    ||||||  |||| |  |||||||||||||| || || |||    
T  18945567 cacaactgaaaaattgtcattcaaaccagtgagaaattgaatcacttgatcttccattctaaaattgcgagcagtacgcatggattcacaacggcatgga 18945666  T
Q  101 tgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttccttgtt 200  Q
    | ||||||||| || |||| ||| ||| ||||| | |||||||| |||||||| ||||||| ||| |||||||| |||||  || | ||    || ||||    
T  18945667 taaggacaagtacacataggcatggga-gatgagagttaagctcctcccaaagggatttcatctctgtgaagtaatcaagttcagatttatcaccctgtt 18945765  T
Q  201 tcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatg 300  Q
    ||||||||||||| | || ||| | ||||| ||  |  | || ||||||||| ||||| ||||||||    |||||||| |||||||||  ||| |||||    
T  18945766 tcaaattgttgattgaagaacgaagtgaagcaacacaaattcgatcaaccttcgaaaaacgttcttgtgattcaatccaaacatcaatgttgtactcatg 18945865  T
Q  301 aaatacgatggtttgagcgatttg 324  Q
    ||| || || |||||||| |||||    
T  18945866 aaacacaatagtttgagcaatttg 18945889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0384 (Bit Score: 153; Significance: 7e-81; HSPs: 1)
Name: scaffold0384
Description:

Target: scaffold0384; HSP #1
Raw Score: 153; E-Value: 7e-81
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 1340 - 972
Alignment:
Q  1 cacaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgacaggga 100  Q
    |||||||||||| || |||||||||| ||| || |||||||| | ||||||||||||| |||| | | | | ||| | ||| |||||||| ||| |||||    
T  1340 cacaactccaaagttgtcattcaaaccagttaggaattgaatcacttggtcctccaaacgaaattctcgtgttgacctcatagattcacaacgataggga 1241  T
Q  101 tgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttccttgtt 200  Q
    ||||||||||| || | || |||||| |||||  |||| |||||||||||||| ||||||| |||||||||||||||||||||||| || |||| |||||    
T  1240 tgaggacaagtacacacaggcatagggcgatgggaattgagctcttcccaaagagatttcatctcagtgaagtattcaagcacaaactttgttcgttgtt 1141  T
Q  201 tcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatg 300  Q
    |||||||||||||||  | ||||||||||| |||| ||| | ||||||| || || || |||||||||||||||||||| ||||||||||| ||||||||    
T  1140 tcaaattgttgatagatgaacgtaatgaagcaattatgattatatcaactttggagaaacgttcttgaagctcaatccaaacatcaatggcatattcatg 1041  T
Q  301 aaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttaca 369  Q
    ||||||||| |||||||| ||||| |||||||||||||  |  ||||||||||| | || |||||||||    
T  1040 aaatacgatagtttgagcaatttgtggagaaacaaaattgatgatccaagaatgaaccatgtagttaca 972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 84; Significance: 1e-39; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 270 - 507
Target Start/End: Complemental strand, 17118497 - 17118244
Alignment:
Q  270 gctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttaca 369  Q
    |||||||||||||||||||||  |||||||| ||||| || || ||||| ||||||||||||||| | | || ||||||| |||||| || |||||||||    
T  17118497 gctcaatccatacatcaatggtatattcatggaatactatagtctgagcaatttgaggagaaacagagttcaaaatccaaaaatggatcaggtagttaca 17118398  T
Q  370 ---------------acg-ttcaaatcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcata 453  Q
                   ||| ||||||||||||| |||||||||||  || |||||||||||||||||||| |||||||| || ||||| | ||  ||||||    
T  17118397 gtgttcccaagcactacggttcaaatcatcaataggagggattggaattgatccatcaacaaaggaaagtttgttcttcgctcctaatgggcgcttcata 17118298  T
Q  454 gaacgatgccatgcgaggtagttagaaccgtcaagaagaggcgtaactaacaca 507  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||| ||||    
T  17118297 gaacgatgccatgcgaggtagttagaaccatcaagaagaggtgtaactatcaca 17118244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 192 - 369
Target Start/End: Complemental strand, 17118693 - 17118516
Alignment:
Q  192 ttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggc 291  Q
    ||||||| ||||| ||||| ||  ||| | |||| ||||||||| | |||||| |||||||||| | |||||||||||||||||||||||||||||||||    
T  17118693 ttccttgcttcaagttgttaatgacagaatgtaaagaagaaattattactctaccaaccttagagaggcgttcttgaagctcaatccatacatcaatggc 17118594  T
Q  292 gtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatggagcaagtagttaca 369  Q
    ||||||||| ||||| || || ||||| |||||| |||||||| | | || |||||||||||||| || |||||||||    
T  17118593 gtattcatggaatactatagtctgagcaatttgacgagaaacagagttcaaaatccaagaatggatcaggtagttaca 17118516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 4 - 303
Target Start/End: Original strand, 13139401 - 13139713
Alignment:
Q  4 aactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgacagggatga 103  Q
    |||||||||||| ||||||||   ||||||||| |||||||  ||  |||| ||| ||||||| ||| | |||| |||||||||||| ||||| ||||||    
T  13139401 aactccaaaattctcattcaagtcagtgagaaactgaatgacctgaacctctaaacgaaaattatgaaccgatctcatggattcacaacgacaaggatga 13139500  T
Q  104 ggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttccttgtttca 203  Q
    ||| |||| || ||||  || || |||||| |||| || ||||  ||||| |||| || |||||| ||||| ||||||||| | || |||||||||||||    
T  13139501 ggataagtgcacataggtattgggcgatgagaattgagttcttaacaaagagattacatctcagtaaagtaatcaagcacatattttgttccttgtttca 13139600  T
Q  204 aattgttgatagcagtacgta----at----------gaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatg 289  Q
    | ||||||| |||| | | ||    ||          |||| |||||| ||||||||||| ||||| || |||||||||||||||||||| ||| |||||    
T  13139601 agttgttga-agcaattcttaccctatcaacattagagaagcaattcttactctatcaacattagagaaacgttcttgaagctcaatccagacaacaatg 13139699  T
Q  290 gcgtattcatgaaa 303  Q
    | ||||||||||||    
T  13139700 gtgtattcatgaaa 13139713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 241 - 351
Target Start/End: Complemental strand, 6340738 - 6340628
Alignment:
Q  241 tctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatcc 340  Q
    ||||||||| |||||||| || ||||||||||||||||| |||||||||||| |||||||||| || || ||||| || |||||  |||||||| ||| |    
T  6340738 tctatcaactttagaaaaacgctcttgaagctcaatccaaacatcaatggcgaattcatgaaaaacaattgtttgtgcaatttgcagagaaacagaattc 6340639  T
Q  341 agaatccaaga 351  Q
    | |||||||||    
T  6340638 aaaatccaaga 6340628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 373 - 507
Target Start/End: Original strand, 13139790 - 13139924
Alignment:
Q  373 ttcaaatcatcaagaggagggattgagatagatccatcaacaaaggaaagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggt 472  Q
    ||||||||||||  |||||||||||  || ||||||||||||||   ||| |||||||| || || ||  | |  |||||||||||||  ||||||||||    
T  13139790 ttcaaatcatcagcaggagggattggaattgatccatcaacaaaatcaagtttgttcttcgctcccaactcacgcttcatagaacgatttcatgcgaggt 13139889  T
Q  473 agttagaaccgtcaagaagaggcgtaactaacaca 507  Q
    |||| ||||| ||||||||||||||||||| ||||    
T  13139890 agttggaaccatcaagaagaggcgtaactagcaca 13139924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 26628758 - 26628696
Alignment:
Q  420 aagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagttagaacc 482  Q
    |||||| |||||||| |||||||| | || ||||||||||  |||||||||||||||||||||    
T  26628758 aagcttattcttggcacctaaagcacgttgcatagaacgactccatgcgaggtagttagaacc 26628696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 420 - 482
Target Start/End: Complemental strand, 26734734 - 26734672
Alignment:
Q  420 aagcttgttcttggcgcctaaagcgcatttcatagaacgatgccatgcgaggtagttagaacc 482  Q
    |||||| |||||||| |||||||| | || ||||||||||  |||||||||||||||||||||    
T  26734734 aagcttattcttggcacctaaagcacgttgcatagaacgactccatgcgaggtagttagaacc 26734672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 159 - 225
Target Start/End: Complemental strand, 20071755 - 20071689
Alignment:
Q  159 tcaactcagtgaagtattcaagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaa 225  Q
    |||||||||||||||| |||||||||||||| ||  |||||||||| ||  |||||| || ||||||    
T  20071755 tcaactcagtgaagtagtcaagcacaaaatttgtatcttgtttcaacttactgatagaagaacgtaa 20071689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 111
Target Start/End: Complemental strand, 17118820 - 17118711
Alignment:
Q  2 acaactccaaaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgacagggat 101  Q
    |||||| ||||| |||||||||| | ||| | ||| ||||||| ||  |||||||||  ||||||  |||| |||| |||||||||||| ||||| || |    
T  17118820 acaacttcaaaagtatcattcaagcgagtcaaaaactgaatgacttcatcctccaaacaaaaattgcgagccgatctcatggattcacaacgacaagggt 17118721  T
Q  102 gaggacaagt 111  Q
    ||| ||||||    
T  17118720 gagcacaagt 17118711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 6e-29; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 121 - 354
Target Start/End: Complemental strand, 17128219 - 17127986
Alignment:
Q  121 cataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttccttgtttcaaattgttgatagcagta 220  Q
    |||||| |||||  |||| ||||| |||||||| || |||| ||  |||||||| |||||||||   || || |||||||| | ||||||||| | || |    
T  17128219 catagggcgatgtgaattgagctcctcccaaagagacttcatctatgtgaagtaatcaagcacagtcttagtaccttgtttaagattgttgattgtagaa 17128120  T
Q  221 cgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcga 320  Q
    || |  | || ||| |  ||||||||||||||||| ||| ||||||||||||||||||| ||||||||||||||||||||||| || |||||||| || |    
T  17128119 cgaagagtagcaatacgaactctatcaaccttagagaagagttcttgaagctcaatccagacatcaatggcgtattcatgaaaaacaatggtttgcgcaa 17128020  T
Q  321 tttgaggagaaacaaaatccagaatccaagaatg 354  Q
    |||| | ||||||| | | ||||||||| |||||    
T  17128019 tttgtgcagaaacatagttcagaatccaggaatg 17127986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 11 - 354
Target Start/End: Original strand, 19805856 - 19806199
Alignment:
Q  11 aaattatcattcaaactagtgagaaattgaatgatttggtcctccaaatgaaaattttgagctgatcgcatggattcacagcgacagggatgaggacaag 110  Q
    |||||||||||||| ||||||||||||||||| | ||  || ||||  ||||| | || ||| |  ||||  || ||||||||||| ||||  |||||||    
T  19805856 aaattatcattcaatctagtgagaaattgaatcacttaatcttccatgtgaaattctttagcagcacgcacagactcacagcgacatggatagggacaag 19805955  T
Q  111 ttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtattcaagcacaaaattggttccttgtttcaaattgtt 210  Q
    | |||  || |||||| |||||  |||| ||||| |||||||| ||||||| ||| |||||||| ||||| | | | || || |||||||  | ||||||    
T  19805956 tgcatgcaggcatagggcgatgtgaattgagctcctcccaaagagatttcatctctgtgaagtaatcaagaatagacttagtaccttgttaaagattgtt 19806055  T
Q  211 gatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatg 310  Q
    ||| | || | | |  | || |||    ||||| | |||||| ||||| | || ||||||||||||||| ||||||||||||||||||||||| ||  ||    
T  19806056 gattgtagaatgaagagtagcaatatgaactctgtgaacctttgaaaaacatttttgaagctcaatccaaacatcaatggcgtattcatgaaaaacagtg 19806155  T
Q  311 gtttgagcgatttgaggagaaacaaaatccagaatccaagaatg 354  Q
    ||||| || ||||| ||||||||  | | || ||||||||||||    
T  19806156 gtttgcgcaatttgtggagaaactgagttcaaaatccaagaatg 19806199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 282 - 334
Target Start/End: Complemental strand, 16985096 - 16985044
Alignment:
Q  282 catcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaaca 334  Q
    |||||||||||| ||||||||| ||||  |||||||| |||||||| ||||||    
T  16985096 catcaatggcgttttcatgaaaaacgagagtttgagcaatttgaggtgaaaca 16985044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 65; Significance: 2e-28; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 77 - 352
Target Start/End: Complemental strand, 13129284 - 13129009
Alignment:
Q  77 cgcatggattcacagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttca-actcagtgaagtat 175  Q
    |||||||||||||| || || |||| ||||||||| || |||| ||| ||||||||| ||||||| || |||||||| ||||| | |||  ||||||||     
T  13129284 cgcatggattcacaacggcaaggataaggacaagtacacataggcatgggacgatgagaattaagttcctcccaaagagattttatactt-gtgaagtaa 13129186  T
Q  176 tcaagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaa 275  Q
    ||||| ||| | ||    ||||||||||||||||| || | || ||||| ||||| ||  |  |  | ||||||||||||||| || ||||| |  ||||    
T  13129185 tcaagaacagatttatcaccttgtttcaaattgttaatggaagaacgtagtgaagcaacacgaatacgatcaaccttagaaaaacgctcttgtaattcaa 13129086  T
Q  276 tccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaa 352  Q
    |||| |||||||||||||||||||| ||||| || |||||||| ||||||||||||||| |||  | ||||||||||    
T  13129085 tccagacatcaatggcgtattcatggaatacaatagtttgagcaatttgaggagaaacagaattaataatccaagaa 13129009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 241 - 351
Target Start/End: Complemental strand, 28015767 - 28015657
Alignment:
Q  241 tctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatcc 340  Q
    ||||||||| |||||||| || ||||||||||||||||| |||||||||||| |||||||||| || || ||||| || |||||  |||||||| ||| |    
T  28015767 tctatcaactttagaaaaacgctcttgaagctcaatccaaacatcaatggcgaattcatgaaaaacaattgtttgtgcaatttgcagagaaacagaattc 28015668  T
Q  341 agaatccaaga 351  Q
    | |||||||||    
T  28015667 aaaatccaaga 28015657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 241 - 351
Target Start/End: Original strand, 20485423 - 20485533
Alignment:
Q  241 tctatcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatcc 340  Q
    ||||||||| |||||||| || |  |||||||||||||| |||||||||||| |||||||||| || || ||||| || |||||  |||||||| ||| |    
T  20485423 tctatcaactttagaaaaacgcttctgaagctcaatccaaacatcaatggcgaattcatgaaaaacaattgtttgtgcaatttgcagagaaacagaattc 20485522  T
Q  341 agaatccaaga 351  Q
    | |||||||||    
T  20485523 aaaatccaaga 20485533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 6e-26; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 77 - 333
Target Start/End: Complemental strand, 55308651 - 55308395
Alignment:
Q  77 cgcatggattcacagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtatt 176  Q
    |||||||||||||| || || |||| ||||||||| || |||| ||| ||||||||| ||||||| || ||||| || ||||| | ||| |||||||| |    
T  55308651 cgcatggattcacaacggcaaggataaggacaagtacacataggcatgggacgatgagaattaagttcctcccatagagatttgatctctgtgaagtaat 55308552  T
Q  177 caagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaat 276  Q
    |||| ||| | ||    |||||||||| |||||| || | || ||||| ||||| ||  |  |  | ||||||||||||||| || ||||| |  |||||    
T  55308551 caagaacagatttatcaccttgtttcagattgttaatggaagaacgtagtgaagcaacacgaatacgatcaaccttagaaaaacgctcttgcaattcaat 55308452  T
Q  277 ccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaac 333  Q
    ||| |||||||||||| |||||||||| || || |||||||| ||||||||||||||    
T  55308451 ccaaacatcaatggcggattcatgaaagacaatagtttgagcaatttgaggagaaac 55308395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 244 - 352
Target Start/End: Complemental strand, 8834575 - 8834467
Alignment:
Q  244 atcaaccttagaaaagcgttcttgaagctcaatccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccaga 343  Q
    ||||||||||||||| || ||||| |  |||||||| |||||||||||| |||||||||| || || |||||||| ||||||||||||||| |||  | |    
T  8834575 atcaaccttagaaaaacgctcttgcaattcaatccaaacatcaatggcggattcatgaaagacaatagtttgagcaatttgaggagaaacataattaata 8834476  T
Q  344 atccaagaa 352  Q
    |||||||||    
T  8834475 atccaagaa 8834467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 77 - 352
Target Start/End: Complemental strand, 26470592 - 26470317
Alignment:
Q  77 cgcatggattcacagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtatt 176  Q
    |||||||||||||| || || |||| ||||||||| || |||| ||| ||||||||| ||||||| || ||||| || ||||| | ||| |||||||| |    
T  26470592 cgcatggattcacaacggcaaggataaggacaagtacacataggcatgggacgatgagaattaagttcctcccatagagatttgatctctgtgaagtaat 26470493  T
Q  177 caagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaat 276  Q
    |||| ||| | ||    |||||||||| |||||| || | || ||| | ||||| ||  |  |  | ||||||||||||||| || ||||| |  |||||    
T  26470492 caagaacagatttatcaccttgtttcagattgttaatggaagaacgcagtgaagcaacacgaatacgatcaaccttagaaaaacgctcttgcaattcaat 26470393  T
Q  277 ccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaa 352  Q
    ||| |||||||||||| |||||||||| |  || |||||||| ||||||||||||||| |||  | ||||||||||    
T  26470392 ccagacatcaatggcggattcatgaaagataatagtttgagcaatttgaggagaaacagaattaataatccaagaa 26470317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 77 - 354
Target Start/End: Original strand, 16992425 - 16992702
Alignment:
Q  77 cgcatggattcacagcgacagggatgaggacaagttcatatagtcataggacgatgaaaattaagctcttcccaaagcgatttcaactcagtgaagtatt 176  Q
    ||||| |||||||| || || ||||| |||||||| || |||| ||||||||||||  |||| ||||| |||||||| ||||||| ||| ||||| || |    
T  16992425 cgcatagattcacaacggcatggatgtggacaagtgcacataggcataggacgatgtgaattgagctcctcccaaagagatttcatctctgtgaaatagt 16992524  T
Q  177 caagcacaaaattggttccttgtttcaaattgttgatagcagtacgtaatgaagaaattctgactctatcaaccttagaaaagcgttcttgaagctcaat 276  Q
    |||| ||| | || |  |||||||| | ||| ||||| | ||  || |  ||||  || |  | ||||||||| |||||||| || || |||||||||||    
T  16992525 caaggacagatttagcaccttgtttgagattattgatggaagagcgaagagaagcgatacgaattctatcaactttagaaaaacgctcctgaagctcaat 16992624  T
Q  277 ccatacatcaatggcgtattcatgaaatacgatggtttgagcgatttgaggagaaacaaaatccagaatccaagaatg 354  Q
    ||| |||||||||||| |||| ||||| || || ||||| || |||||  |||||||| | | || ||||||||||||    
T  16992625 ccaaacatcaatggcgaattcgtgaaaaacaattgtttgtgcaatttgcagagaaacagagttcaaaatccaagaatg 16992702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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