View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12451_low_6 (Length: 505)
Name: NF12451_low_6
Description: NF12451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12451_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 205 - 424
Target Start/End: Original strand, 41342185 - 41342404
Alignment:
| Q |
205 |
taagaatcaaatgctctaattaaaaatggttaaagtatattggcacaaatggaattactcacatttgtgtcaagagtgttgttgtagcattggtggttgc |
304 |
Q |
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| T |
41342185 |
taagaatcaaatgctctaattaaaaatggttaaagtatattggcacaaatggaattactcacatttgtgtcaagagtgttgttgtagcattggtggttgc |
41342284 |
T |
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| Q |
305 |
cgtcagaagatctaattggtcctgatggtgccattatgtccataccatgactcccagcataatataaattatttaacttcacaaaatcttttacctaaac |
404 |
Q |
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| T |
41342285 |
cgtcagaagatctaattggtcctgatggtgccattatgtccataccatgactcccagcataatataaattatttaacttcacaaaatcttttacctaaac |
41342384 |
T |
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| Q |
405 |
caaaaagttatataatgaga |
424 |
Q |
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| T |
41342385 |
caaaaagttatataatgaga |
41342404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 1 - 148
Target Start/End: Original strand, 41342041 - 41342187
Alignment:
| Q |
1 |
aaataaaaatattaaattacagcaacagaagatggtcccatgtaacttgctgacctcttgaattgcaggtaaaaacttcttggcaggttgaaatggaact |
100 |
Q |
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| T |
41342041 |
aaataaaaatattaaattacagcaccagaagatggtcccatgtaacttgctgacctcttgaattgcaggtaaaaacttcttggcaggttgaaatggaact |
41342140 |
T |
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| Q |
101 |
tcattgccctgaaaattaacatcaaatatcaaatgctttattttataa |
148 |
Q |
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| T |
41342141 |
tcattgccctgaaaattaacatc-aatatcaaatgctttattttataa |
41342187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 461 - 500
Target Start/End: Original strand, 41342449 - 41342488
Alignment:
| Q |
461 |
aaattaagtaagctttataactcaccttctctctgcttct |
500 |
Q |
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| T |
41342449 |
aaattaagtaagctttataactcaccttctctcggcttct |
41342488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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