View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12451_low_9 (Length: 418)
Name: NF12451_low_9
Description: NF12451
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12451_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 320; Significance: 1e-180; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 71 - 402
Target Start/End: Original strand, 1055163 - 1055494
Alignment:
| Q |
71 |
aataataaagaaaccaatcacaaaagaaaagaagagaggttagagaagtaaaagtactatcgtgtcctcttctccgttcacgcaaatggggtgcatggct |
170 |
Q |
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| T |
1055163 |
aataataaagaaaccaatcacaaaagaaaagaagagaggttagagaagtaaaagtactatcgtgtcctcttctccgttcacgcaaatggggtgcatggct |
1055262 |
T |
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| Q |
171 |
ccaactccatccatctcttccttcttcatctcaccctctcaagctcaccgttaccgtcacactttccgtttccgttccactaacgacgctaacctcactc |
270 |
Q |
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| T |
1055263 |
ccaactccatccatctcctccttcttcatctcaccctctcaagctcaccgttaccgtcacactttccgtttccgttccactaacgacgttaacctcactc |
1055362 |
T |
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| Q |
271 |
ttctccccatgcgcactcaattcaattatccaccacgcgttcaacaacactccacaactccttctcctcctccgccggaagaaaagaaatccttcgccgt |
370 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1055363 |
ttctccccacgcgcactcaattcaattatccaccacgcgttcaacaacactccacaactccttctcctcctccgccggaagaaaagaaatccttcgccgt |
1055462 |
T |
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| Q |
371 |
tgccaccggcgagcttttcttaggtatagctt |
402 |
Q |
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|||||||||||||||||||||||||||||||| |
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| T |
1055463 |
tgccaccggcgagcttttcttaggtatagctt |
1055494 |
T |
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