View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12452_low_1 (Length: 384)

Name: NF12452_low_1
Description: NF12452
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12452_low_1
NF12452_low_1
[»] chr3 (3 HSPs)
chr3 (94-384)||(29403122-29403412)
chr3 (16-64)||(29403442-29403490)
chr3 (123-151)||(29403071-29403099)


Alignment Details
Target: chr3 (Bit Score: 279; Significance: 1e-156; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 94 - 384
Target Start/End: Complemental strand, 29403412 - 29403122
Alignment:
Q  94 atatattgagaaagtaattagagaaagaaatggtgaatttaatagaaagaagagttgaaatcatggctgatgaagggtgctcacattcataatagaagga 193  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29403412 atatattgagaaagtaattagagaaagaaatggtgaatttaatagaaagaagagttgaaatcatggctgatgaagggtgctcacattcataatagaagga 29403313  T
Q  194 tataagaaaagatatggagtgtcaccttctattcttcttcaaatcatattggattatgaatttgctaattgaaattagtggtcaaagttgataaaatgga 293  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| ||||||||||||||    
T  29403312 tataagaaaagatatggagtgtcaccttctattcttcttcaaatcatattggattatgaatttgctaattaaaattagtgttcaatgttgataaaatgga 29403213  T
Q  294 gatgggatataaagagttagagtgagagaaaatttggagattgtagaagagatggttgaattttggtcaccataacgaattttatggggaa 384  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29403212 gatgggatataaagagttagagtgagagaaaatttggagattgtagaagagatggttgaattttggtcaccataacgaattttatggggaa 29403122  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 16 - 64
Target Start/End: Complemental strand, 29403490 - 29403442
Alignment:
Q  16 caatcacaagtcttctttacaagcaatcaaattttttgatttagttctg 64  Q
    ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  29403490 caatcacaagttttctttacaagcaatcaaagtttttgatttagttctg 29403442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 151
Target Start/End: Complemental strand, 29403099 - 29403071
Alignment:
Q  123 atggtgaatttaatagaaagaagagttga 151  Q
    |||||||||||||||||||||||||||||    
T  29403099 atggtgaatttaatagaaagaagagttga 29403071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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