View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12453_high_1 (Length: 1077)
Name: NF12453_high_1
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12453_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 604; Significance: 0; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 604; E-Value: 0
Query Start/End: Original strand, 351 - 1060
Target Start/End: Complemental strand, 4650481 - 4649759
Alignment:
| Q |
351 |
gctaggtgaattatttcagtaa---aaataaataaactaggtgaattattgctgacatataaaacctgaaaaggacatattaggtaactacnnnnnnnnn |
447 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
4650481 |
gctaggtgaattatttcagtaataaaaataaataaactaggtgaattattgctgacatatacaacctgaaaaggacatattaggtaactacaaaaaaaa- |
4650383 |
T |
|
| Q |
448 |
ggacatattaggtgatgtgtgaggggcatgtcaattattaacacgtacgttttgttggcacataaataaaaaattgtattaatttcaaatttatggttgc |
547 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650382 |
ggacatattaggtgatgtgtgaggggcatgtcaattattaacacgtacgttttgttggcacataaataaaaaattgtattaatttcaaatttatggttgc |
4650283 |
T |
|
| Q |
548 |
agggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtg |
647 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650282 |
agggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtg |
4650183 |
T |
|
| Q |
648 |
gagaccaatggagtgatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgcttgattaatctctctatgctt |
747 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650182 |
gagaccaatggagtgatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgcttgattaatctctctatgctt |
4650083 |
T |
|
| Q |
748 |
aaagaataattagctagctatttgcttaatggatcattattgatcttttgttctatatggaaatattcctatcatgtaatccatttcaagctagctaact |
847 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650082 |
aaagaataattagctagctaattgcttaatggatcattattgatcttttgttctatatggaaatattcctatcatgtaatccatttcaagctagctaact |
4649983 |
T |
|
| Q |
848 |
tttatgttcttgaattgaataaaattaatcatgttacatagctttctcttaattttgtggttttaattataaa-----------ttcttattccgaatag |
936 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
4649982 |
tttatgttcttgaattgaataaaattaatcatgttacatagctttctcttaattttgtggttttaattataaattgcatgtatgttcttattccgaatag |
4649883 |
T |
|
| Q |
937 |
aaaattggttccttaatcaaacaattgagttcaagtggtaaacgagattcatcaatgatgaatcgttcaggtgaacctgaatttgatttctgggtagaac |
1036 |
Q |
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||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| ||||||| ||||||||||||||| |
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| T |
4649882 |
aaaattggtcccttaaccaaacaattgagttcaagtggtaaacgagcttcatcaatgatgaatcgctcaggtgaacttgaatttaatttctgggtagaac |
4649783 |
T |
|
| Q |
1037 |
aagcgttggtcagactatctttac |
1060 |
Q |
| |
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|| ||||||||||||||||||||| |
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| T |
4649782 |
aaacgttggtcagactatctttac |
4649759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 4650815 - 4650570
Alignment:
| Q |
13 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaa |
112 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650815 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaa |
4650716 |
T |
|
| Q |
113 |
cttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaattaattgttcataggagaaagtaattggaattatga |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650715 |
cttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaattaattgttcataggagaaagtaattggaattatga |
4650616 |
T |
|
| Q |
213 |
gtcataaccttctatatttacaatagagtatattcaatgtcatgat |
258 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4650615 |
gtcataaccttctatatttacaatagagtatattcaatgtcatgat |
4650570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 225; E-Value: 1e-123
Query Start/End: Original strand, 562 - 922
Target Start/End: Original strand, 23681988 - 23682337
Alignment:
| Q |
562 |
atatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggagt |
661 |
Q |
| |
|
|||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
23681988 |
atatcatggtaaaatagcatttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaatagtggagaccaatggagt |
23682087 |
T |
|
| Q |
662 |
gatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctt---tactacattgcttgattaatctctctatgcttaaagaataatt |
758 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23682088 |
gatattcttggaaccaacactggtgaaaggactttcaaactccctgatcctctttactactacattgcttgattaatctctctatgcttaaagaataatt |
23682187 |
T |
|
| Q |
759 |
agctagctatttgcttaatggatcattattgatcttttgttctatatggaaatattcctatcatgtaatccatttcaagctagctaacttttatgttctt |
858 |
Q |
| |
|
|||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
23682188 |
agctagctatttgcctaatgg---attattgatcttttgttctatatggaaatattcctatcatgtaatccatttcga-------------tatgttc-- |
23682269 |
T |
|
| Q |
859 |
gaattgaataaaattaatcatgttac-------atagctttctcttaattttgtggttttaattataaatt |
922 |
Q |
| |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
23682270 |
---ttgaataaaattaatcatgttacataagaaatagctttctcttaattttgtggttttaattataaatt |
23682337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 106; E-Value: 2e-52
Query Start/End: Original strand, 561 - 726
Target Start/End: Complemental strand, 4645975 - 4645810
Alignment:
| Q |
561 |
tatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggag |
660 |
Q |
| |
|
|||||||||||||||| |||||| |||||||||||||||||||||||| | || |||||||||| |||||| ||||||||| |||||| |||||||| |
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| T |
4645975 |
tatatcatggtaaaacagcagttacatacaaatcatctgagagaaagaaattggaggaagaaggatacagaattgttggaaacattggagatcaatggag |
4645876 |
T |
|
| Q |
661 |
tgatattcttggaaccaacactggtgaaaggactttcaagctccctgatcctctttactacattgc |
726 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
4645875 |
tgatattcttggaaccaatactggtgaaaggactttcaagctccctgatcccctctactacattgc |
4645810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 8e-33
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 23680683 - 23680759
Alignment:
| Q |
102 |
acagctaagaacttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaatt |
178 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23680683 |
acagctaagaacttgaaacaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaatt |
23680759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 3e-32
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 23679499 - 23679594
Alignment:
| Q |
13 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagcta |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||| |||| |
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|
| T |
23679499 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgtcaaatttgtgttcttaacaggaagaccactcaaacagaaggacattacggcta |
23679594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 352 - 487
Target Start/End: Original strand, 23681394 - 23681528
Alignment:
| Q |
352 |
ctaggtgaattatttcagtaaaaataaataaactaggtgaat-tattgctga-catataaaacctgaaaaggacatattaggtaactacnnnnnnnnngg |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||| || |
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|
| T |
23681394 |
ctaggtgaattatttcagtaaaaataaataaactaggtgaataaattgctgaccatattcaaactgaaaaggacatattaggtaactac-aaaaaaaagg |
23681492 |
T |
|
| Q |
450 |
acatattaggtgatgtgtgaggggcatgtcaattatta |
487 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||| |
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|
| T |
23681493 |
acatattaggtga--tgtgagggacatgtcaattatta |
23681528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 7e-18
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 4646441 - 4646346
Alignment:
| Q |
22 |
aaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaacttga |
117 |
Q |
| |
|
||||||||||||| ||| || | ||||||| | |||||||| ||||||||||| ||||||||||||||||| || ||||||||||||||||||| |
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| T |
4646441 |
aaaaattgtacaataaattgttgtctcttggtatcaagattgcgttcttaacaggcagaccactcaaacagaaagaaattacagctaagaacttga |
4646346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 1e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 533 - 654
Target Start/End: Complemental strand, 41872375 - 41872254
Alignment:
| Q |
533 |
caaatttatggttgcagggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaa |
632 |
Q |
| |
|
||||||| |||| |||||||||| | |||||||||||||||| |||||| ||||||||| || |||||||||||||| || |||||||||| | || |
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|
| T |
41872375 |
caaatttgtggtctcagggatacatcaatatatcatggtaaaacagcagttacatacaaatcgtcagagagaaagaagctggaggaagaaggatacaaaa |
41872276 |
T |
|
| Q |
633 |
ttattggaaacagtggagacca |
654 |
Q |
| |
|
| |||||||||| |||||||| |
|
|
| T |
41872275 |
tcattggaaacataggagacca |
41872254 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 41872660 - 41872538
Alignment:
| Q |
47 |
tcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaacttgaaagaagctggctaccacacatatgaaaag |
146 |
Q |
| |
|
||||||| | ||||||| ||||||||| |||||| || |||||||||| |||| ||||| ||||| |||| | ||||||||||| ||| ||||| |
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| T |
41872660 |
tcttggtatcaagattgtattcttaactggaagagcaaacaaacagaagaacataacagccaagaatttgagacttgctggctaccatacacgggaaaaa |
41872561 |
T |
|
| Q |
147 |
ctaattttgaagtaagttttcta |
169 |
Q |
| |
|
||||||| |||||||||||||| |
|
|
| T |
41872560 |
ctaatttgcaagtaagttttcta |
41872538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 951 - 1004
Target Start/End: Complemental strand, 13462562 - 13462509
Alignment:
| Q |
951 |
aatcaaacaattgagttcaagtggtaaacgagattcatcaatgatgaatcgttc |
1004 |
Q |
| |
|
|||||||| |||||||||||||| |||| ||| |||||||| |||||||||||| |
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|
| T |
13462562 |
aatcaaacgattgagttcaagtgttaaatgagtttcatcaaagatgaatcgttc |
13462509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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