View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12453_high_10 (Length: 301)
Name: NF12453_high_10
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12453_high_10 |
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Alignment Details
Target: chr3 (Bit Score: 163; Significance: 4e-87; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 56 - 279
Target Start/End: Complemental strand, 21077097 - 21076874
Alignment:
| Q |
56 |
cttagaagttgtgtcccaatccatttaagtatttcctgcatttggctaattgattgatcaggataggaacttaagttttatttaactgggctagtacagt |
155 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
21077097 |
cttagaagttgtgtcccaatccatttaagtattttttgcatttagttaattgattgatcaggataggaacttaagttttatttaactgggctagtacagt |
21076998 |
T |
|
| Q |
156 |
ttccactaactgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctcttannnnnnngtctacctgaccatacatgtttt |
255 |
Q |
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||||| ||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||| ||||||||| ||||||||||||| |
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| T |
21076997 |
ttccattaactgtgagatttttcaatatggtgtctgaaataccctctcaaattccgcacaatttctcttatttttttgtctacctggccatacatgtttt |
21076898 |
T |
|
| Q |
256 |
ggaaagcttcttcagactttagct |
279 |
Q |
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|||||||||||||| ||||||||| |
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| T |
21076897 |
ggaaagcttcttcaaactttagct |
21076874 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 55 - 224
Target Start/End: Complemental strand, 21023175 - 21023003
Alignment:
| Q |
55 |
acttagaagttgtgtcccaatccatttaagtatttcctgcatttggctaattgattgatcaggataggaacttaagttttatttaactgggctagtacag |
154 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||| || | |||||||||||||||||||||||||||||||| |
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| T |
21023175 |
acttagaagttgtgccccaatccatttaagtatttcctgcatttagctaattgattgatcgggtttaaaacttaagttttatttaactgggctagtacag |
21023076 |
T |
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| Q |
155 |
tttcc---actaactgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctt |
224 |
Q |
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| T |
21023075 |
tcccccctactcactgtgagattttccaataaggtgcctgagatactctctcaaattctgcacaatttctctt |
21023003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 166 - 209
Target Start/End: Complemental strand, 21806803 - 21806760
Alignment:
| Q |
166 |
tgtgagatttttcaatatggtgtctgagatatcctctcagattc |
209 |
Q |
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| T |
21806803 |
tgtgatattttttaatatggtgtctgagatatcctcttagattc |
21806760 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 138 - 225
Target Start/End: Original strand, 33699737 - 33699824
Alignment:
| Q |
138 |
taactgggctagtacagtttccactaactgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctta |
225 |
Q |
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| T |
33699737 |
taactaggctagtatggtctccactaactgtgagattttccaatatggtgtctgagataccctctcagattctgcacactttctctta |
33699824 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Complemental strand, 260759 - 260701
Alignment:
| Q |
166 |
tgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctt |
224 |
Q |
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||||||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||| |
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| T |
260759 |
tgtgagattttccaatatggtgtatgagataccctctcagattcttcacattttctctt |
260701 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 655162 - 655220
Alignment:
| Q |
166 |
tgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctt |
224 |
Q |
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||||||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||| |
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| T |
655162 |
tgtgagattttccaatatggtgtatgagataccctctcagattcttcacattttctctt |
655220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 224
Target Start/End: Original strand, 840897 - 840955
Alignment:
| Q |
166 |
tgtgagatttttcaatatggtgtctgagatatcctctcagattccgcacaatttctctt |
224 |
Q |
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||||||||||| ||||||||||| ||||||| |||||||||||| |||| |||||||| |
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| T |
840897 |
tgtgagattttccaatatggtgtatgagataccctctcagattcttcacattttctctt |
840955 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 139 - 196
Target Start/End: Original strand, 25427493 - 25427550
Alignment:
| Q |
139 |
aactgggctagtacagtttccactaactgtgagatttttcaatatggtgtctgagata |
196 |
Q |
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|||||||||||| |||| |||||| ||| |||||||||||||| ||||| ||||||| |
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| T |
25427493 |
aactgggctagtccagtctccactgactttgagatttttcaatctggtgcttgagata |
25427550 |
T |
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