View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12453_high_11 (Length: 298)
Name: NF12453_high_11
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12453_high_11 |
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| [»] scaffold0003 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 284
Target Start/End: Original strand, 15658027 - 15658309
Alignment:
| Q |
1 |
atagggttaagcatcatttggctggaacgagtagagatgttgtggtttgtccgtcagttcctctggatgttaagaaacttatgcaagataatgttaataa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
15658027 |
atagggttaagcatcatttggctggaacgagtagagatgttgcggtttgtccgtcggttcctctggatgttaagaaacttatgcaagataaggttaataa |
15658126 |
T |
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| Q |
101 |
gttacaaaagaagctgctagaaaaagctaatgtgatagttgtcgatgctgatggtgacaaagacggtgctgctgatgctgatcttgagattattagtggt |
200 |
Q |
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| T |
15658127 |
gttacaaaagaagctgctagaaaaagctaatttgatagttgtcgatgctgatggtgacaaagacggtgctgctgatgctgatcttgagattattagtggt |
15658226 |
T |
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| Q |
201 |
gggaggggaaaaagaaaaagtgcaggggagatagcacataagaacatgtttaaaagaggactcactacaatgaaacaaagcaca |
284 |
Q |
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| T |
15658227 |
gggaggggaaaaagaaaaagtgcaggggagatagcacataagaacatg-ttaaaagaggactcactacgatgaaacaaagcaca |
15658309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003 (Bit Score: 148; Significance: 4e-78; HSPs: 3)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 148; E-Value: 4e-78
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 243952 - 244233
Alignment:
| Q |
1 |
atagggttaagcatcatttggctggaacgagtagagatgttgtggtttgtccgtcagttcctctggatgttaagaaacttatgcaagataatgttaataa |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||| | ||||||||| ||||||| ||||||||||||| ||||||| |||| ||| |||| |
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| T |
243952 |
atagggttaagcatcatttaactggaacgagtagagatgtttcgccttgtccgtcggttcctccggatgttaagaaagttatgcaggatagggttgataa |
244051 |
T |
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| Q |
101 |
gttacaaaagaagct-gctagaaaaagctaatgtgatagttgtcgatgctg---atggtgacaaagacggtgctgctgatgctgatcttgagattattag |
196 |
Q |
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| T |
244052 |
gttacaaaagaagtttgctaaaaaaagctaatttgttagttgtcgatgctgctgatggggacaaagatggtgctgctgatgctgatcttgagattgttga |
244151 |
T |
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| Q |
197 |
tggtgggaggggaaaaagaaaaagtgcaggggagatagcacataagaacatgtttaaaagaggactcactacaatgaaacaa |
278 |
Q |
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| T |
244152 |
tggaggcaggggaaaaagaaaaagtgtaagcgagatagcacctaagaacatgtttaaaagaggactcactacaatgaaacaa |
244233 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 246508 - 246359
Alignment:
| Q |
1 |
atagggttaagcatcatttggctggaacgagtagagatgttgtggtttgtccgtcagttcctctggatgttaagaaacttatgcaagataatgttaataa |
100 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| | || ||||| ||||||| ||||||||||||| ||||| | |||| ||| |||| |
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| T |
246508 |
atagggttaagcatcatttggctggaacgagcagagatgtttcgccatgcccgtcggttcctccggatgttaagaaaattatgtaggatagggttgataa |
246409 |
T |
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| Q |
101 |
gttacaaaagaagctgctagaaaaagctaatgtgatagttgtcgatgctg |
150 |
Q |
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| T |
246408 |
gttaccaaagaagttgctaaaaaaagctaatttgttagttgtcgatgctg |
246359 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 176 - 278
Target Start/End: Complemental strand, 246360 - 246258
Alignment:
| Q |
176 |
tgctgatcttgagattattagtggtgggaggggaaaaagaaaaagtgcaggggagatagcacataagaacatgtttaaaagaggactcactacaatgaaa |
275 |
Q |
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|||||||||| ||||| || ||| ||||||||||||||||||| || | |||||||||||| |||||||||||||| |||||||||||||||||||||| |
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| T |
246360 |
tgctgatcttcagattgttgatggcgggaggggaaaaagaaaaattgtaagggagatagcacctaagaacatgtttacaagaggactcactacaatgaaa |
246261 |
T |
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| Q |
276 |
caa |
278 |
Q |
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||| |
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| T |
246260 |
caa |
246258 |
T |
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