View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12453_high_15 (Length: 269)
Name: NF12453_high_15
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12453_high_15 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 255
Target Start/End: Complemental strand, 53592535 - 53592299
Alignment:
| Q |
19 |
cttacttgcattgctgttctcttcaagtagttgggtttgggacagataggtgaaatcgctatgttctctctcctgctaccctagccgccgccaacaacct |
118 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53592535 |
cttacttgcattgttgttctcttcaagtagttgggtttgggacagataggtgaaatcgctatgttctctctcctgctaccctagccgccgccaacaacct |
53592436 |
T |
|
| Q |
119 |
ccataaccactcacctctcctcctgcaatccaaacacgttttccatcatgtagtctcacgcaggtggtgaacgcgctcctcgccgcttcaccaccctcgc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
53592435 |
ccataaccactcacctctcctcctgcaatccaaacacattttccatcatgtagcctgacgcaagtggtgaacgcgctcctcgccgcttcaccaccctcgc |
53592336 |
T |
|
| Q |
219 |
tccttgttccgttgggtagctggggccgtctgtgctc |
255 |
Q |
| |
|
||||||||| |||||||||| || ||||||||||||| |
|
|
| T |
53592335 |
tccttgttctgttgggtagccggcgccgtctgtgctc |
53592299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 126; Significance: 5e-65; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 98 - 255
Target Start/End: Original strand, 23779380 - 23779537
Alignment:
| Q |
98 |
cctagccgccgccaacaacctccataaccactcacctctcctcctgcaatccaaacacgttttccatcatgtagtctcacgcaggtggtgaacgcgctcc |
197 |
Q |
| |
|
|||||||||| || ||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
23779380 |
cctagccgccaccgacaacctccataaccactcacctctcctcctccaatccaaacacgtttttcatcatgtagcctcacgcaggtggtgaacgcgctcc |
23779479 |
T |
|
| Q |
198 |
tcgccgcttcaccaccctcgctccttgttccgttgggtagctggggccgtctgtgctc |
255 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||| |
|
|
| T |
23779480 |
tcgccgcttcaccaccctcgctccttgttccgttgggtagccggcgccgtatgtgctc |
23779537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University