View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12453_high_2 (Length: 705)
Name: NF12453_high_2
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12453_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 8)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 351 - 687
Target Start/End: Complemental strand, 4650481 - 4650143
Alignment:
| Q |
351 |
gctaggtgaattatttcagtaa---aaataaataaactaggtgaattattgctgacatataaaacctgaaaaggacatattaggtaactacnnnnnnnnn |
447 |
Q |
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| T |
4650481 |
gctaggtgaattatttcagtaataaaaataaataaactaggtgaattattgctgacatatacaacctgaaaaggacatattaggtaactacaaaaaaaa- |
4650383 |
T |
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| Q |
448 |
ggacatattaggtgatgtgtgaggggcatgtcaattattaacacgtacgttttgttggcacataaataaaaaattgtattaatttcaaatttatggttgc |
547 |
Q |
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| T |
4650382 |
ggacatattaggtgatgtgtgaggggcatgtcaattattaacacgtacgttttgttggcacataaataaaaaattgtattaatttcaaatttatggttgc |
4650283 |
T |
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| Q |
548 |
agggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtg |
647 |
Q |
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| T |
4650282 |
agggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtg |
4650183 |
T |
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| Q |
648 |
gagaccaatggagtgatattcttggaaccaacactggtga |
687 |
Q |
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| T |
4650182 |
gagaccaatggagtgatattcttggaaccaacactggtga |
4650143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 13 - 258
Target Start/End: Complemental strand, 4650815 - 4650570
Alignment:
| Q |
13 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaa |
112 |
Q |
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| T |
4650815 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaa |
4650716 |
T |
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| Q |
113 |
cttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaattaattgttcataggagaaagtaattggaattatga |
212 |
Q |
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| T |
4650715 |
cttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaattaattgttcataggagaaagtaattggaattatga |
4650616 |
T |
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| Q |
213 |
gtcataaccttctatatttacaatagagtatattcaatgtcatgat |
258 |
Q |
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| T |
4650615 |
gtcataaccttctatatttacaatagagtatattcaatgtcatgat |
4650570 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 110; E-Value: 5e-55
Query Start/End: Original strand, 562 - 687
Target Start/End: Original strand, 23681988 - 23682113
Alignment:
| Q |
562 |
atatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggagt |
661 |
Q |
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| T |
23681988 |
atatcatggtaaaatagcatttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaatagtggagaccaatggagt |
23682087 |
T |
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| Q |
662 |
gatattcttggaaccaacactggtga |
687 |
Q |
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| T |
23682088 |
gatattcttggaaccaacactggtga |
23682113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 561 - 687
Target Start/End: Complemental strand, 4645975 - 4645849
Alignment:
| Q |
561 |
tatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaattattggaaacagtggagaccaatggag |
660 |
Q |
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| T |
4645975 |
tatatcatggtaaaacagcagttacatacaaatcatctgagagaaagaaattggaggaagaaggatacagaattgttggaaacattggagatcaatggag |
4645876 |
T |
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| Q |
661 |
tgatattcttggaaccaacactggtga |
687 |
Q |
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| T |
4645875 |
tgatattcttggaaccaatactggtga |
4645849 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 102 - 178
Target Start/End: Original strand, 23680683 - 23680759
Alignment:
| Q |
102 |
acagctaagaacttgaaagaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaatt |
178 |
Q |
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| T |
23680683 |
acagctaagaacttgaaacaagctggctaccacacatatgaaaagctaattttgaagtaagttttctaacattaatt |
23680759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 13 - 108
Target Start/End: Original strand, 23679499 - 23679594
Alignment:
| Q |
13 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagcta |
108 |
Q |
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| T |
23679499 |
cagagacacaaaaattgtacaacaaactggtaaatcttggtgtcaaatttgtgttcttaacaggaagaccactcaaacagaaggacattacggcta |
23679594 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 352 - 487
Target Start/End: Original strand, 23681394 - 23681528
Alignment:
| Q |
352 |
ctaggtgaattatttcagtaaaaataaataaactaggtgaat-tattgctga-catataaaacctgaaaaggacatattaggtaactacnnnnnnnnngg |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| || |||||||||||||||||||||||||| || |
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| T |
23681394 |
ctaggtgaattatttcagtaaaaataaataaactaggtgaataaattgctgaccatattcaaactgaaaaggacatattaggtaactac-aaaaaaaagg |
23681492 |
T |
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| Q |
450 |
acatattaggtgatgtgtgaggggcatgtcaattatta |
487 |
Q |
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| T |
23681493 |
acatattaggtga--tgtgagggacatgtcaattatta |
23681528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 22 - 117
Target Start/End: Complemental strand, 4646441 - 4646346
Alignment:
| Q |
22 |
aaaaattgtacaacaaactggtaaatcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaacttga |
117 |
Q |
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| T |
4646441 |
aaaaattgtacaataaattgttgtctcttggtatcaagattgcgttcttaacaggcagaccactcaaacagaaagaaattacagctaagaacttga |
4646346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 7e-17; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 533 - 654
Target Start/End: Complemental strand, 41872375 - 41872254
Alignment:
| Q |
533 |
caaatttatggttgcagggatacagaattatatcatggtaaaactgcagttcaatacaaatcatctgagagaaagaagcttgaagaagaaggatggagaa |
632 |
Q |
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||||||| |||| |||||||||| | |||||||||||||||| |||||| ||||||||| || |||||||||||||| || |||||||||| | || |
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| T |
41872375 |
caaatttgtggtctcagggatacatcaatatatcatggtaaaacagcagttacatacaaatcgtcagagagaaagaagctggaggaagaaggatacaaaa |
41872276 |
T |
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| Q |
633 |
ttattggaaacagtggagacca |
654 |
Q |
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| T |
41872275 |
tcattggaaacataggagacca |
41872254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 47 - 169
Target Start/End: Complemental strand, 41872660 - 41872538
Alignment:
| Q |
47 |
tcttggtgttaagattgcattcttaacaggaagaccactcaaacagaaggacattacagctaagaacttgaaagaagctggctaccacacatatgaaaag |
146 |
Q |
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||||||| | ||||||| ||||||||| |||||| || |||||||||| |||| ||||| ||||| |||| | ||||||||||| ||| ||||| |
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| T |
41872660 |
tcttggtatcaagattgtattcttaactggaagagcaaacaaacagaagaacataacagccaagaatttgagacttgctggctaccatacacgggaaaaa |
41872561 |
T |
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| Q |
147 |
ctaattttgaagtaagttttcta |
169 |
Q |
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||||||| |||||||||||||| |
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| T |
41872560 |
ctaatttgcaagtaagttttcta |
41872538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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