View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12453_low_16 (Length: 275)
Name: NF12453_low_16
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12453_low_16 |
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Alignment Details
Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 6 - 116
Target Start/End: Original strand, 7505992 - 7506102
Alignment:
| Q |
6 |
atggaggactgtgactcagagactaagcaaaataatgtttctttcaccaccaatatgtcattacaactccaactagaagtttaggatcaatgccaaaata |
105 |
Q |
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| T |
7505992 |
atggaggactgtgagtcagagactaagcaaaataatgtttctttcaccaccaatatgtcattacaactccaactagaagtttaggatcaatgccaaatta |
7506091 |
T |
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| Q |
106 |
ttagcaccaaa |
116 |
Q |
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| T |
7506092 |
ttagcaccaaa |
7506102 |
T |
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Target: chr2; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 111 - 268
Target Start/End: Original strand, 7506143 - 7506290
Alignment:
| Q |
111 |
accaaagacgtgcacaagcctatgtacgtaactttgtttaattactttggcacattgactctcaattgagagttaagttactatatctaagttcaactga |
210 |
Q |
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|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
7506143 |
accatagatgtgcacaagcctatgtacgtaactttgtttaattactttggcacattgagtctcaattgagagttaagttactatatctaagttca----- |
7506237 |
T |
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| Q |
211 |
cacacactcacacagaatgtgtgtctatatatagggagttactctagtgagagtctct |
268 |
Q |
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| T |
7506238 |
-----actcacacagaatgtgtgtctatatattgggagtgactctagtgagagtctct |
7506290 |
T |
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