View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12453_low_18 (Length: 264)
Name: NF12453_low_18
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12453_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 5460851 - 5461084
Alignment:
| Q |
18 |
ccataaagaatagattttgagcatctgagtgttattaatttcaaattaagagataaatattaaataattatggcagaacctttagtacacattcctactt |
117 |
Q |
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| T |
5460851 |
ccataaagaatagattttgagcatctgagtgttattaatttcaaattaagtgataaatattaaataattatggcagaaccttaa-tacacattcctactt |
5460949 |
T |
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| Q |
118 |
tccaccaatggccaaggttaccaccacccttccccttttctcatcgcaatatctcgaaggtgaaagatgatcattccaacaccgactatgtgctgctttt |
217 |
Q |
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| T |
5460950 |
tccaccaatggccaagattaccaccacccttccccttttctcatcgcaatatctcgaaggtgaaagatgatcattccaacaccgactatgtgctgctttt |
5461049 |
T |
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| Q |
218 |
acagtactgttgcatgtaccacatatcccaatctc |
252 |
Q |
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| T |
5461050 |
atagtactgttgcatgtaccatatatcccaatctc |
5461084 |
T |
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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 99
Target Start/End: Original strand, 24864607 - 24864654
Alignment:
| Q |
52 |
ttaatttcaaattaagagataaatattaaataattatggcagaacctt |
99 |
Q |
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| T |
24864607 |
ttaatttcaaattaagagataaatattaaatgataatggtagaacctt |
24864654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Original strand, 24866364 - 24866416
Alignment:
| Q |
131 |
aaggttaccaccacccttccccttttctcatcgcaatatctcgaaggtgaaag |
183 |
Q |
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| T |
24866364 |
aaggataccaccacccttccccttttatcatctctgtatctcgaaggtgaaag |
24866416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 105 - 204
Target Start/End: Original strand, 24052234 - 24052333
Alignment:
| Q |
105 |
cacattcctactttccaccaatggccaaggttaccaccacccttccccttttctcatcgcaatatctcgaaggtgaaagatgatcattccaacaccgact |
204 |
Q |
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| T |
24052234 |
cacattgctacttttcaccggtggtcaagggtactgccacccttccccttttctcacctctctatgtctaaggtgaaaggtcaacattccaacaccgact |
24052333 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 183
Target Start/End: Complemental strand, 8365112 - 8365055
Alignment:
| Q |
126 |
tggccaaggttaccaccacccttccccttttctcatcgcaatatctcgaaggtgaaag |
183 |
Q |
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| T |
8365112 |
tggccaaggataccaccacccttccccttttttcatctctctatctcaaaggtgaaag |
8365055 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 128 - 184
Target Start/End: Original strand, 1968267 - 1968323
Alignment:
| Q |
128 |
gccaaggttaccaccacccttccccttttctcatcgcaatatctcgaaggtgaaaga |
184 |
Q |
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| T |
1968267 |
gccaaggataccaccacccttccccttttttcatttctctatcttgaaggtgaaaga |
1968323 |
T |
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