View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12453_low_20 (Length: 240)

Name: NF12453_low_20
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12453_low_20
NF12453_low_20
[»] chr3 (3 HSPs)
chr3 (10-229)||(27608293-27608516)
chr3 (10-229)||(34496749-34496968)
chr3 (10-229)||(31505741-31505957)


Alignment Details
Target: chr3 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 27608293 - 27608516
Alignment:
Q  10 aggagcacagacatctgcaatgttaccatctgannnnnnngaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc 109  Q
    |||| ||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27608293 aggaacacagacatctgcaatgttaccatctgatttttttgaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc 27608392  T
Q  110 ctagaaggatgtaac---cagcatagtttccttttgcat-nnnnnnnctacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgtt 205  Q
    |||||||||||||||   |||||||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27608393 ctagaaggatgtaaccagcagcatagtttccttttgcataaataaaactacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgtt 27608492  T
Q  206 ctcaccgttgagctgatgtccatc 229  Q
    ||||||||||||||||||| ||||    
T  27608493 ctcaccgttgagctgatgtgcatc 27608516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 10 - 229
Target Start/End: Original strand, 34496749 - 34496968
Alignment:
Q  10 aggagcacagacatctgcaatgttaccatctgannnnnnngaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc 109  Q
    |||| ||||||||||||||||||||||||  ||       |||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  34496749 aggaacacagacatctgcaatgttaccattggatttttttgaagaattacatgtattaattcaaccagcaaagggaaaatccaatgaaaattagtttttc 34496848  T
Q  110 ctagaaggatgtaaccagcatagtttccttttgcatnnnnnnnctacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctca 209  Q
    ||||||||||||||||| ||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34496849 ctagaaggatgtaaccaacatagtttccttttgcataaaaaaactacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctca 34496948  T
Q  210 ccgttgagctgatgtccatc 229  Q
    ||||||||||||||| ||||    
T  34496949 ccgttgagctgatgtgcatc 34496968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 10 - 229
Target Start/End: Complemental strand, 31505957 - 31505741
Alignment:
Q  10 aggagcacagacatctgcaatgttaccatctgannnnnnngaagaattacatgtattaattcaaccggcaaagggaaaatccaatgaaaattggtttttc 109  Q
    |||| ||||||||||||||||||||||||||||        |||||| || ||||| |||||||||| ||||||||||||| ||||||||||||||||||    
T  31505957 aggaacacagacatctgcaatgttaccatctgattttacc-aagaatcacgtgtatcaattcaaccgacaaagggaaaatcaaatgaaaattggtttttc 31505859  T
Q  110 ctagaaggatgtaaccagcatagtttccttttgcatnnnnnnnctacaatagaatagtttaaagcatcaattaacactagataacaaggaaatgttctca 209  Q
     |||||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  31505858 -tagaaggatgtaaccagcatagttgccttttgcataacaga-ctacaatagaatagtttaaagcatcaattaacactaggtaacaaggaaatgttctca 31505761  T
Q  210 ccgttgagctgatgtccatc 229  Q
    ||||||||||||||| ||||    
T  31505760 ccgttgagctgatgtgcatc 31505741  T

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