View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12453_low_22 (Length: 237)
Name: NF12453_low_22
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12453_low_22 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 21597729 - 21597927
Alignment:
| Q |
13 |
gcagcacagacgagagcttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattcttaggaatgaaaatgagccaccagcaa |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| |
|
|
| T |
21597729 |
gcagcaccgacgagagcttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattctaaggaatgaaaacgagccaccagcaa |
21597828 |
T |
|
| Q |
113 |
caggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcga |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21597829 |
caggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagcatcga |
21597927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 12 - 207
Target Start/End: Original strand, 11987492 - 11987687
Alignment:
| Q |
12 |
agcagcacagacgagagcttcaaggagaatattcccagcggcaatgaaagcgagaaaatcaccaagttcaattcttaggaatgaaaatgagccaccagca |
111 |
Q |
| |
|
|||||||| ||| | ||||||||||||||||||||| || |||||||||||||| || ||||| ||||| |||||||||||| |||| || ||||| ||| |
|
|
| T |
11987492 |
agcagcaccgacaatagcttcaaggagaatattcccggcagcaatgaaagcgaggaagtcaccgagttcgattcttaggaatcaaaacgaaccaccggca |
11987591 |
T |
|
| Q |
112 |
acaggaacttcaacggcgaattcagcgtagattaaagctgaaagaagagcagagaaacctgacgcggcgtaagagaggataatggaaggaccagca |
207 |
Q |
| |
|
|| ||||||||||| ||||||||||| ||||| ||||||||||||||||| ||||| ||||| |||||||| |||||||||||||||||||||||| |
|
|
| T |
11987592 |
acgggaacttcaactgcgaattcagcatagatgaaagctgaaagaagagctgagaatcctgaagcggcgtaggagaggataatggaaggaccagca |
11987687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University