View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12453_low_3 (Length: 614)
Name: NF12453_low_3
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12453_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 222 - 599
Target Start/End: Complemental strand, 43926385 - 43926008
Alignment:
| Q |
222 |
gatgatgaatagatagatcaatagcaacaacagtaaaatgaaagttnnnnnnnnnnnnnnnnnnnnnnttgtttttaagactctttattttaatatatgt |
321 |
Q |
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| T |
43926385 |
gatgatgaatagatagatcaatagcaacaacagtaaaatgaaagttaaaaaaaaaaaaaaaataataattgtttttaagactctttattttaatatatgt |
43926286 |
T |
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| Q |
322 |
tacatgaaaatgggaaatgtagaaaccaaaagaaatgtgaccatatatgctttgacgtatgttggattttatatataaactaattaattatattttggta |
421 |
Q |
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| T |
43926285 |
tacatgaaaatgggaaatgtagaaaccaaaagaaatgtgaccatatatgctttgacgtatgttagattttatatataaactaattaattatattttggta |
43926186 |
T |
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| Q |
422 |
gggggatgattaccttttgaatgatgatggtattcccaagccaagttaccccattcattggaagggaaagaatggtttatattgtgctggactatcaagg |
521 |
Q |
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| T |
43926185 |
gggggatgattaccttttgaatgatgatggtattcccaagccaagttaccccattcattggaagggaaagaatggtttatattgtgctggactatcaagg |
43926086 |
T |
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| Q |
522 |
agaggtttctatggagctgctgcagatgcaaaaaatgtagcaaatgatgtgagatccatcatgcaaaatctatgaagt |
599 |
Q |
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| T |
43926085 |
agaggtttctatggagctgctgcagatgcaaaaaatgtagcaaatgatgtgagatccatcatgcaaaatctatgaagt |
43926008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 147; E-Value: 3e-77
Query Start/End: Original strand, 15 - 161
Target Start/End: Complemental strand, 43926593 - 43926447
Alignment:
| Q |
15 |
tgtgttgtgtgttacgttaggttttaccagcggaaatagaatgcgtaagtgggaagaatgtcctcttcaaaaatggccaattacactcttttgactctat |
114 |
Q |
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| T |
43926593 |
tgtgttgtgtgttacgttaggttttaccagcggaaatagaatgcgtaagtgggaagaatgtcctcttcaaaaatggccaattacactcttttgactctat |
43926494 |
T |
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| Q |
115 |
tattttctgcaccggcttcaagagatcaacccacaagtggcttaagg |
161 |
Q |
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| T |
43926493 |
tattttctgcaccggcttcaagagatcaacccacaagtggcttaagg |
43926447 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 104 - 161
Target Start/End: Complemental strand, 43938409 - 43938352
Alignment:
| Q |
104 |
tttgactctattattttctgcaccggcttcaagagatcaacccacaagtggcttaagg |
161 |
Q |
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| T |
43938409 |
tttgactccattattttctgcactggtttcaagagatcaactcaaaaatggcttaagg |
43938352 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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