View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12453_low_4 (Length: 442)
Name: NF12453_low_4
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12453_low_4 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 20 - 437
Target Start/End: Complemental strand, 41264539 - 41264129
Alignment:
| Q |
20 |
acaagactggtctcgcttgcgatatctgcagatttattcttcactttggtctctgcattctcaaaggaggtactatattctctgttaagctgttttcgta |
119 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41264539 |
acaagaccggtctcgcttgcgatatctgcagatttattcttcactttggtctctgcattctcaaaggaggtactatattctctgttaagctgttttcgta |
41264440 |
T |
|
| Q |
120 |
taaactatatccagtttattattatgtgtcagtgtcatgtctgatgttcatgtttgtatccgtatttcatagcttgtggccttattaattatatgtatta |
219 |
Q |
| |
|
||||||||| ||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
|
|
| T |
41264439 |
taaactataaccaatttattat---gtgtcagtgtcatgtctgatgttcatgtttgtatcggtatttcatagcttgtggccttatta----tatgtatta |
41264347 |
T |
|
| Q |
220 |
aaatttgacatagtcaactatattttaatgttgatgaactatggttgcaaaattttacactgccaagtgtcaactaatcacaaatcttgaatgtgacttg |
319 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
41264346 |
aaatttgacatagtcaactatattttaatgttgatgaactatgggtgcaaaattttacactgccaagtgtcaactaatcacaaatcttgtatgtgacttg |
41264247 |
T |
|
| Q |
320 |
caagatagttaagattatattcaaacattagatcctatgttatgtgcagcttgagggatgctgatcatttcttgtgaataatattatccagatgtttcaa |
419 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41264246 |
caagatagttaatattatattcaaacattagatcctatgttatgtgcagcttgagggatgctgatcatttcttgtgaataatattatccagatgtttcaa |
41264147 |
T |
|
| Q |
420 |
ctgatggtctgtgctgct |
437 |
Q |
| |
|
|||||||| |||| |||| |
|
|
| T |
41264146 |
ctgatggtgtgtggtgct |
41264129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University