View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12453_low_6 (Length: 409)

Name: NF12453_low_6
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12453_low_6
NF12453_low_6
[»] chr4 (3 HSPs)
chr4 (8-390)||(54575582-54575964)
chr4 (217-365)||(54581586-54581733)
chr4 (41-69)||(33534184-33534212)
[»] chr1 (5 HSPs)
chr1 (107-145)||(50998491-50998529)
chr1 (41-70)||(10199423-10199452)
chr1 (41-70)||(25479607-25479636)
chr1 (41-69)||(4700081-4700109)
chr1 (41-69)||(15361067-15361095)
[»] chr3 (3 HSPs)
chr3 (41-70)||(34924553-34924582)
chr3 (41-69)||(41633387-41633415)
chr3 (41-69)||(51206513-51206541)
[»] chr8 (2 HSPs)
chr8 (105-145)||(14482141-14482181)
chr8 (42-70)||(31862519-31862547)
[»] chr7 (3 HSPs)
chr7 (41-69)||(7244707-7244735)
chr7 (102-146)||(28613622-28613666)
chr7 (41-69)||(46082063-46082091)
[»] chr6 (4 HSPs)
chr6 (42-70)||(323598-323626)
chr6 (102-142)||(8349752-8349792)
chr6 (41-69)||(32386578-32386606)
chr6 (105-145)||(33787836-33787876)
[»] chr5 (2 HSPs)
chr5 (107-143)||(36638687-36638723)
chr5 (105-145)||(37063165-37063205)
[»] chr2 (1 HSPs)
chr2 (41-69)||(35379031-35379059)


Alignment Details
Target: chr4 (Bit Score: 359; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 359; E-Value: 0
Query Start/End: Original strand, 8 - 390
Target Start/End: Original strand, 54575582 - 54575964
Alignment:
Q  8 agaacctgtgaaaatagttaatgacatagttatttgttttcagcttattttcataagctctcttaagtagttgtagaaagaatgaagagactaattaact 107  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54575582 agaacttgtgaaaatagttaatgacatagttatttgttttcagcttattttcataagctctcttaagtagttgtagaaagaatgaagagactaattaact 54575681  T
Q  108 ttgttttatcttttgttacagaaaaagtttatacataatgcttacgttgtataagctgcaagttaagttaactattttcaacctggaagctgcaaggcct 207  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54575682 ttgttttatcttttgttatagaaaaagtttatacataatgcttacgttgtataagctgcaagttaagttaactattttcaacctggaagctgcaaggcct 54575781  T
Q  208 agaaaaagaggaaagtgaaaaggagaaaaccttgcaaggcctggactcaatgactatgtaaccgttcctgcgaatgttaccagcctgtagagggtaggtt 307  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  54575782 agaaaaagaggaaagggaaaaggagaaaaccttgcaaggcctggactcaatgacgatgtaaccgttcctgcgaatgttaccagcctgtagagggtaggtt 54575881  T
Q  308 tgtggatactccggcatcggcagcaggttcaaagtgatgtttttcgtcagacatggtgatatgtggagttgcgatcttttcag 390  Q
    | |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  54575882 tttggatactccggcatcggcagcaggttcaaagtgatgtttttagtcagacatggtgatatgtggagttgcgatcttttcag 54575964  T

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Target: chr4; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 217 - 365
Target Start/End: Original strand, 54581586 - 54581733
Alignment:
Q  217 ggaaagtgaaaaggagaaaaccttgcaaggcctggactcaatgactatgtaaccgttcctgcgaatgttaccagcctgtagagggtaggtttgtggatac 316  Q
    |||||| |||||||||||||||||||||||||||||||  ||||| |||||||| ||| |||||||  |||| |||||| |||| ||||||| ||||| |    
T  54581586 ggaaagggaaaaggagaaaaccttgcaaggcctggacttgatgacgatgtaaccattcttgcgaatagtaccggcctgttgaggataggttt-tggatgc 54581684  T
Q  317 tccggcatcggcagcaggttcaaagtgatgtttttcgtcagacatggtg 365  Q
    ||||||||||||||| |||||||||||||||| ||||||||||||||||    
T  54581685 tccggcatcggcagcgggttcaaagtgatgttcttcgtcagacatggtg 54581733  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 33534184 - 33534212
Alignment:
Q  41 ttgttttcagcttattttcataagctctc 69  Q
    |||||||||||||||||||||||||||||    
T  33534184 ttgttttcagcttattttcataagctctc 33534212  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 107 - 145
Target Start/End: Complemental strand, 50998529 - 50998491
Alignment:
Q  107 tttgttttatcttttgttacagaaaaagtttatacataa 145  Q
    ||||||||||||||||||||||||| || ||||||||||    
T  50998529 tttgttttatcttttgttacagaaatagcttatacataa 50998491  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 70
Target Start/End: Original strand, 10199423 - 10199452
Alignment:
Q  41 ttgttttcagcttattttcataagctctct 70  Q
    ||||||||||||||||||||||||||||||    
T  10199423 ttgttttcagcttattttcataagctctct 10199452  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 70
Target Start/End: Complemental strand, 25479636 - 25479607
Alignment:
Q  41 ttgttttcagcttattttcataagctctct 70  Q
    ||||||||||||||||||||||||||||||    
T  25479636 ttgttttcagcttattttcataagctctct 25479607  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 4700081 - 4700109
Alignment:
Q  41 ttgttttcagcttattttcataagctctc 69  Q
    |||||||||||||||||||||||||||||    
T  4700081 ttgttttcagcttattttcataagctctc 4700109  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 15361095 - 15361067
Alignment:
Q  41 ttgttttcagcttattttcataagctctc 69  Q
    |||||||||||||||||||||||||||||    
T  15361095 ttgttttcagcttattttcataagctctc 15361067  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 70
Target Start/End: Original strand, 34924553 - 34924582
Alignment:
Q  41 ttgttttcagcttattttcataagctctct 70  Q
    ||||||||||||||||||||||||||||||    
T  34924553 ttgttttcagcttattttcataagctctct 34924582  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 41633415 - 41633387
Alignment:
Q  41 ttgttttcagcttattttcataagctctc 69  Q
    |||||||||||||||||||||||||||||    
T  41633415 ttgttttcagcttattttcataagctctc 41633387  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 51206513 - 51206541
Alignment:
Q  41 ttgttttcagcttattttcataagctctc 69  Q
    |||||||||||||||||||||||||||||    
T  51206513 ttgttttcagcttattttcataagctctc 51206541  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 145
Target Start/End: Complemental strand, 14482181 - 14482141
Alignment:
Q  105 actttgttttatcttttgttacagaaaaagtttatacataa 145  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  14482181 actttattttatcttttgttatagaaatagtttatacataa 14482141  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 31862547 - 31862519
Alignment:
Q  42 tgttttcagcttattttcataagctctct 70  Q
    |||||||||||||||||||||||||||||    
T  31862547 tgttttcagcttattttcataagctctct 31862519  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 7244735 - 7244707
Alignment:
Q  41 ttgttttcagcttattttcataagctctc 69  Q
    |||||||||||||||||||||||||||||    
T  7244735 ttgttttcagcttattttcataagctctc 7244707  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 146
Target Start/End: Original strand, 28613622 - 28613666
Alignment:
Q  102 ttaactttgttttatcttttgttacagaaaaagtttatacataat 146  Q
    |||||||||||||||||||||||| | ||| || |||||||||||    
T  28613622 ttaactttgttttatcttttgttataaaaatagcttatacataat 28613666  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 46082091 - 46082063
Alignment:
Q  41 ttgttttcagcttattttcataagctctc 69  Q
    |||||||||||||||||||||||||||||    
T  46082091 ttgttttcagcttattttcataagctctc 46082063  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000006; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 42 - 70
Target Start/End: Complemental strand, 323626 - 323598
Alignment:
Q  42 tgttttcagcttattttcataagctctct 70  Q
    |||||||||||||||||||||||||||||    
T  323626 tgttttcagcttattttcataagctctct 323598  T

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Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 8349752 - 8349792
Alignment:
Q  102 ttaactttgttttatcttttgttacagaaaaagtttataca 142  Q
    |||||||| ||||||||||||||| ||||| ||||||||||    
T  8349752 ttaactttattttatcttttgttagagaaatagtttataca 8349792  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 32386578 - 32386606
Alignment:
Q  41 ttgttttcagcttattttcataagctctc 69  Q
    |||||||||||||||||||||||||||||    
T  32386578 ttgttttcagcttattttcataagctctc 32386606  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 33787836 - 33787876
Alignment:
Q  105 actttgttttatcttttgttacagaaaaagtttatacataa 145  Q
    |||||||||||| |||||||| ||||| |||||||||||||    
T  33787836 actttgttttatattttgttatagaaatagtttatacataa 33787876  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 107 - 143
Target Start/End: Complemental strand, 36638723 - 36638687
Alignment:
Q  107 tttgttttatcttttgttacagaaaaagtttatacat 143  Q
    ||||||||||||||||||| ||||| |||||||||||    
T  36638723 tttgttttatcttttgttatagaaatagtttatacat 36638687  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 105 - 145
Target Start/End: Original strand, 37063165 - 37063205
Alignment:
Q  105 actttgttttatcttttgttacagaaaaagtttatacataa 145  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  37063165 actttattttatcttttgttatagaaatagtttatacataa 37063205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 41 - 69
Target Start/End: Original strand, 35379031 - 35379059
Alignment:
Q  41 ttgttttcagcttattttcataagctctc 69  Q
    |||||||||||||||||||||||||||||    
T  35379031 ttgttttcagcttattttcataagctctc 35379059  T

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