View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12453_low_9 (Length: 346)
Name: NF12453_low_9
Description: NF12453
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12453_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 309; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 309; E-Value: 1e-174
Query Start/End: Original strand, 16 - 332
Target Start/End: Original strand, 41704193 - 41704509
Alignment:
| Q |
16 |
cacagattgatgcacagtctcaaatttagtagattaaatgtcttatatcaggtgtgataattttcatatacaaacaaaagaatgaaacgatcgagcaaca |
115 |
Q |
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| T |
41704193 |
cacagattgatgcacagtctcaaatttagtagattaaacgtcttatatcaggtgtgataattttcatatacaaacaaaagaatgaaacgatcgagcaaca |
41704292 |
T |
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| Q |
116 |
acacaaaaatgatttggtccaggtccacaaaatttattgtgtgtcttaaaataacttccaaacgacaggaatggtctcaataagagtcggataaacgtgt |
215 |
Q |
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| T |
41704293 |
acacaaaaatgatttggtccaggtccacaaaatttattgtgtgacttaaaataacttccaaacgacaggaatggtctcaataagagtcggataaacgtgt |
41704392 |
T |
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| Q |
216 |
aagagcttctgaattgtcaatgttagcttagctgcacaaccaatattgtatttatcttatttttggtcctgccctacaactcaaataagcattataatta |
315 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41704393 |
aagagcttctgaattgtcaatgttagcttagctgcacaaccaatattgtatttatcttatttttggtcctgccctacaactcaaataagcattataatta |
41704492 |
T |
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| Q |
316 |
aaagtttagaaaagaat |
332 |
Q |
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||||||||||||||||| |
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| T |
41704493 |
aaagtttagaaaagaat |
41704509 |
T |
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