View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12454_low_12 (Length: 245)

Name: NF12454_low_12
Description: NF12454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12454_low_12
NF12454_low_12
[»] chr7 (29 HSPs)
chr7 (1-240)||(20924334-20924573)
chr7 (11-196)||(14927348-14927533)
chr7 (11-196)||(15350814-15350999)
chr7 (11-216)||(29545391-29545597)
chr7 (68-216)||(21261190-21261338)
chr7 (1-216)||(10037981-10038195)
chr7 (55-216)||(23082027-23082188)
chr7 (73-194)||(26132228-26132349)
chr7 (64-216)||(10280600-10280752)
chr7 (1-216)||(20992236-20992453)
chr7 (72-216)||(24902870-24903013)
chr7 (15-217)||(4459446-4459650)
chr7 (72-143)||(23960789-23960860)
chr7 (1-133)||(16207215-16207347)
chr7 (1-216)||(12326505-12326721)
chr7 (83-137)||(16221903-16221957)
chr7 (64-144)||(10661618-10661698)
chr7 (91-216)||(15507013-15507139)
chr7 (76-193)||(42636974-42637091)
chr7 (154-216)||(10661947-10662009)
chr7 (73-133)||(15438841-15438901)
chr7 (76-119)||(19295519-19295562)
chr7 (68-119)||(24814853-24814904)
chr7 (174-216)||(3801872-3801914)
chr7 (75-217)||(7585800-7585942)
chr7 (174-216)||(11520661-11520703)
chr7 (74-119)||(9567656-9567701)
chr7 (68-109)||(15709121-15709162)
chr7 (79-120)||(30226816-30226857)
[»] chr2 (10 HSPs)
chr2 (1-209)||(21531071-21531279)
chr2 (11-216)||(15329024-15329228)
chr2 (64-216)||(21249448-21249601)
chr2 (73-147)||(24789478-24789553)
chr2 (68-119)||(27108203-27108254)
chr2 (68-119)||(27111792-27111843)
chr2 (68-118)||(36397839-36397889)
chr2 (167-216)||(23759484-23759533)
chr2 (74-119)||(24311201-24311246)
chr2 (174-216)||(12911359-12911401)
[»] chr6 (40 HSPs)
chr6 (1-216)||(15930099-15930314)
chr6 (1-175)||(23881990-23882164)
chr6 (1-218)||(29252927-29253148)
chr6 (63-216)||(12385109-12385262)
chr6 (57-136)||(19598430-19598509)
chr6 (73-220)||(17235359-17235507)
chr6 (64-216)||(13196080-13196233)
chr6 (2-209)||(17863731-17863939)
chr6 (73-216)||(9280960-9281104)
chr6 (68-217)||(24564474-24564623)
chr6 (76-207)||(12038968-12039101)
chr6 (11-218)||(20653772-20653981)
chr6 (1-122)||(25806101-25806222)
chr6 (73-133)||(21722742-21722802)
chr6 (73-148)||(23879650-23879726)
chr6 (73-216)||(19077908-19078048)
chr6 (61-216)||(26964805-26964959)
chr6 (73-146)||(19893988-19894062)
chr6 (68-118)||(34639555-34639605)
chr6 (75-151)||(13869717-13869794)
chr6 (72-120)||(19658683-19658731)
chr6 (73-216)||(33666556-33666698)
chr6 (64-123)||(11992365-11992424)
chr6 (73-151)||(25970442-25970521)
chr6 (73-151)||(25974882-25974961)
chr6 (69-119)||(11961230-11961280)
chr6 (64-216)||(20989040-20989193)
chr6 (73-122)||(8465012-8465061)
chr6 (2-119)||(24542348-24542465)
chr6 (71-119)||(20764351-20764399)
chr6 (68-119)||(21316941-21316992)
chr6 (154-209)||(24542683-24542738)
chr6 (64-216)||(19168202-19168355)
chr6 (92-149)||(20465230-20465288)
chr6 (139-216)||(17868220-17868297)
chr6 (64-117)||(17868275-17868328)
chr6 (139-216)||(17878003-17878080)
chr6 (64-117)||(17878058-17878111)
chr6 (73-122)||(21705875-21705924)
chr6 (164-209)||(23880948-23880993)
[»] chr8 (11 HSPs)
chr8 (2-216)||(18622355-18622566)
chr8 (11-151)||(27924768-27924909)
chr8 (76-216)||(26537055-26537196)
chr8 (11-209)||(33962436-33962632)
chr8 (64-204)||(9997253-9997392)
chr8 (11-151)||(23540722-23540863)
chr8 (11-209)||(33977762-33977958)
chr8 (164-216)||(9997580-9997632)
chr8 (72-216)||(20254128-20254272)
chr8 (74-115)||(23250483-23250524)
chr8 (91-151)||(45136893-45136954)
[»] scaffold1001 (1 HSPs)
scaffold1001 (1-204)||(656-858)
[»] chr5 (18 HSPs)
chr5 (75-216)||(22081942-22082083)
chr5 (64-216)||(26037533-26037686)
chr5 (1-209)||(20714001-20714208)
chr5 (11-216)||(18221812-18222018)
chr5 (1-216)||(38406054-38406269)
chr5 (88-214)||(23419809-23419936)
chr5 (74-216)||(23624607-23624749)
chr5 (68-216)||(13941266-13941414)
chr5 (93-216)||(26328467-26328590)
chr5 (76-217)||(23757506-23757648)
chr5 (76-217)||(23822962-23823104)
chr5 (73-216)||(22251291-22251435)
chr5 (73-129)||(30605029-30605085)
chr5 (79-217)||(22404010-22404149)
chr5 (75-217)||(24190630-24190773)
chr5 (68-119)||(22183666-22183717)
chr5 (174-216)||(22240228-22240270)
chr5 (74-122)||(20127705-20127753)
[»] chr3 (26 HSPs)
chr3 (64-216)||(286151-286303)
chr3 (1-117)||(21253347-21253463)
chr3 (91-216)||(21547566-21547692)
chr3 (88-209)||(28051918-28052040)
chr3 (68-216)||(3551731-3551878)
chr3 (65-204)||(6578812-6578951)
chr3 (1-209)||(18063464-18063673)
chr3 (68-214)||(979634-979780)
chr3 (1-119)||(17042108-17042220)
chr3 (75-221)||(13514863-13515010)
chr3 (154-216)||(6578572-6578634)
chr3 (73-217)||(17135394-17135539)
chr3 (11-151)||(20626958-20627099)
chr3 (73-216)||(24196290-24196434)
chr3 (68-119)||(214443-214494)
chr3 (159-218)||(296248-296307)
chr3 (68-118)||(18477854-18477904)
chr3 (162-216)||(28052189-28052243)
chr3 (76-133)||(18482707-18482764)
chr3 (74-118)||(8225849-8225893)
chr3 (174-218)||(23953806-23953850)
chr3 (68-119)||(25020156-25020207)
chr3 (174-216)||(7028321-7028363)
chr3 (174-216)||(15572256-15572298)
chr3 (159-209)||(21253300-21253349)
chr3 (74-123)||(15674182-15674231)
[»] chr4 (30 HSPs)
chr4 (1-218)||(15699585-15699802)
chr4 (2-216)||(19182933-19183149)
chr4 (88-216)||(10724977-10725106)
chr4 (88-216)||(10938746-10938875)
chr4 (101-216)||(15161753-15161869)
chr4 (64-204)||(9069700-9069840)
chr4 (88-216)||(15623216-15623344)
chr4 (1-119)||(33744164-33744282)
chr4 (68-118)||(49975008-49975058)
chr4 (73-216)||(18600910-18601054)
chr4 (15-216)||(16384597-16384799)
chr4 (1-119)||(33746612-33746731)
chr4 (68-118)||(10718235-10718285)
chr4 (68-118)||(10932004-10932054)
chr4 (68-118)||(10683007-10683057)
chr4 (68-118)||(10896647-10896697)
chr4 (138-216)||(33744496-33744574)
chr4 (68-121)||(41786193-41786246)
chr4 (163-216)||(41786278-41786331)
chr4 (154-214)||(10723323-10723383)
chr4 (154-214)||(10937092-10937152)
chr4 (68-119)||(10197596-10197647)
chr4 (154-209)||(10683272-10683327)
chr4 (154-209)||(10896912-10896967)
chr4 (68-118)||(10723047-10723097)
chr4 (68-118)||(10936816-10936866)
chr4 (79-120)||(11905837-11905878)
chr4 (73-216)||(23399446-23399590)
chr4 (88-121)||(25117636-25117669)
chr4 (72-120)||(32862408-32862456)
[»] chr1 (24 HSPs)
chr1 (73-216)||(25349480-25349623)
chr1 (1-209)||(23477194-23477401)
chr1 (1-209)||(1626266-1626474)
chr1 (60-216)||(10339410-10339566)
chr1 (1-151)||(17850743-17850893)
chr1 (88-216)||(11667153-11667282)
chr1 (73-216)||(20200339-20200483)
chr1 (76-216)||(24986751-24986892)
chr1 (73-216)||(4246803-4246949)
chr1 (73-217)||(20840513-20840658)
chr1 (1-119)||(12753753-12753871)
chr1 (154-216)||(17838230-17838292)
chr1 (73-148)||(26971716-26971792)
chr1 (154-216)||(15803465-15803527)
chr1 (68-209)||(41330640-41330781)
chr1 (73-123)||(22891145-22891195)
chr1 (73-148)||(9452171-9452247)
chr1 (73-148)||(13150057-13150133)
chr1 (2-42)||(15803562-15803602)
chr1 (68-119)||(8282680-8282731)
chr1 (68-119)||(51471439-51471490)
chr1 (138-216)||(12759297-12759375)
chr1 (174-216)||(13166261-13166303)
chr1 (68-118)||(22347972-22348022)
[»] scaffold0213 (1 HSPs)
scaffold0213 (1-216)||(7829-8045)
[»] scaffold0226 (3 HSPs)
scaffold0226 (73-216)||(17375-17519)
scaffold0226 (73-216)||(26769-26913)
scaffold0226 (76-216)||(6789-6931)
[»] scaffold0035 (1 HSPs)
scaffold0035 (88-218)||(38085-38215)
[»] scaffold0103 (1 HSPs)
scaffold0103 (73-216)||(24928-25072)
[»] scaffold0185 (1 HSPs)
scaffold0185 (73-151)||(1683-1762)
[»] scaffold0190 (1 HSPs)
scaffold0190 (73-131)||(15957-16015)
[»] scaffold0259 (1 HSPs)
scaffold0259 (64-151)||(16641-16729)
[»] scaffold0129 (1 HSPs)
scaffold0129 (73-121)||(16270-16318)
[»] scaffold0088 (1 HSPs)
scaffold0088 (73-151)||(37355-37434)
[»] scaffold0008 (1 HSPs)
scaffold0008 (135-216)||(36568-36649)
[»] scaffold0520 (2 HSPs)
scaffold0520 (68-119)||(5727-5778)
scaffold0520 (68-119)||(11982-12033)
[»] scaffold0064 (1 HSPs)
scaffold0064 (68-119)||(45316-45367)
[»] scaffold0059 (1 HSPs)
scaffold0059 (73-147)||(47710-47785)
[»] scaffold0006 (1 HSPs)
scaffold0006 (73-123)||(88511-88561)
[»] scaffold0453 (1 HSPs)
scaffold0453 (73-148)||(1319-1395)
[»] scaffold0069 (1 HSPs)
scaffold0069 (73-133)||(9439-9499)
[»] scaffold0359 (1 HSPs)
scaffold0359 (174-216)||(2756-2798)
[»] scaffold0480 (1 HSPs)
scaffold0480 (74-119)||(11946-11991)
[»] scaffold0034 (1 HSPs)
scaffold0034 (74-119)||(50258-50303)


Alignment Details
Target: chr7 (Bit Score: 228; Significance: 1e-126; HSPs: 29)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 20924573 - 20924334
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20924573 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 20924474  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagaca 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20924473 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcttacaacacaaacatgaatatttgttttaacaacaatgcagaca 20924374  T
Q  201 atacaaatatccaacagttctctcaatgatgtccatctca 240  Q
    |||||||||||||||||||||||||||||| | |||||||    
T  20924373 atacaaatatccaacagttctctcaatgatcttcatctca 20924334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 14927348 - 14927533
Alignment:
Q  11 aagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgta 110  Q
    |||||||| ||||||||||||||||||||||| || ||  ||| | |||| ||||||| |||||||||||| || | |||||||||||||||||||||||    
T  14927348 aagataagaaaatatggtttccttaaataataaaaggcgcgcgtacaaaccgacatgatacaaggcacactaaaccgtgccaggatgttggaacatcgta 14927447  T
Q  111 tccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgca 196  Q
    ||||||||||||  |||||| ||||| ||||||| ||||||  |||| |||||||||||||| |||||||||||| ||| ||||||    
T  14927448 tccaacatcttaaagagatgtctgaaacatgttggaacattgtatccaacaacacaaacatggatatttgttttagcaataatgca 14927533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 11 - 196
Target Start/End: Original strand, 15350814 - 15350999
Alignment:
Q  11 aagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgta 110  Q
    |||||||| ||||||||||||||||||||||| || ||  ||| | |||| ||||||| |||||||||||| || | |||||||||||||||||||||||    
T  15350814 aagataagaaaatatggtttccttaaataataaaaggcgcgcgtacaaaccgacatgatacaaggcacactaaaccgtgccaggatgttggaacatcgta 15350913  T
Q  111 tccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgca 196  Q
    ||||||||||||  |||||| ||||| ||||||| ||||||  |||| |||||||||||||| |||||||||||| ||| ||||||    
T  15350914 tccaacatcttaaagagatgtctgaaacatgttggaacattgtatccaacaacacaaacatggatatttgttttagcaataatgca 15350999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 216
Target Start/End: Complemental strand, 29545597 - 29545391
Alignment:
Q  11 aagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgta 110  Q
    |||||| |||||||| ||||||||||| |||| |  ||  ||| | ||| || |||||| | || ||||||||| | ||| ||||||||||||||| |||    
T  29545597 aagatacggaaatattgtttccttaaacaataaagggcgcgcgtacaaataggcatgaacccagacacactgaaccatgctaggatgttggaacattgta 29545498  T
Q  111 tccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaata 209  Q
    ||||||||||||| ||||||||| ||| ||||||| |||||||  ||| |||||||||||| |||||||| ||||| ||||||| ||  |||||||||||    
T  29545497 tccaacatcttacagagatgcctaaacacatgttggaacattagttccaacaacacaaacaagaatatttattttagcaacaatacaaccaatacaaata 29545398  T
Q  210 tccaaca 216  Q
    |||||||    
T  29545397 tccaaca 29545391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 68 - 216
Target Start/End: Original strand, 21261190 - 21261338
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaa 167  Q
    ||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| || |||||| || ||||||| |||||   |||| ||| |||||    
T  21261190 aaacaaggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttacagaaatgcctaaaacatgttggaacatagtatccaacatcacaa 21261289  T
Q  168 acatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
     ||||||||||| ||||| |||  |||||| ||||||||||| ||||||    
T  21261290 tcatgaatatttattttagcaatgatgcagccaatacaaatacccaaca 21261338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 10038195 - 10037981
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    |||||||||||||||| |   || ||| |||||||| ||| |||| || |||| | || ||| ||| ||||||||||||||||| | |||||| ||||||    
T  10038195 cttggtcagcaagatatgaggatgtggattccttaa-taagataaagcgtgcgtacaatcaggcataaaacaaggcacactgaaccatgccagtatgttg 10038097  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagaca 200  Q
    ||||||  ||||||||||||||| || |||||| || ||||||| |||||   |||| |||| ||||||||| |||||||||||  ||| ||||||| ||    
T  10038096 gaacattatatccaacatcttacagaaatgcctaaaacatgttggaacatagtatccaacaatacaaacatggatatttgttttcgcaataatgcagcca 10037997  T
Q  201 atacaaatatccaaca 216  Q
    ||||||||| ||||||    
T  10037996 atacaaatacccaaca 10037981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 55 - 216
Target Start/End: Complemental strand, 23082188 - 23082027
Alignment:
Q  55 ataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattaca 154  Q
    |||| ||| ||| ||| ||||||||||||| | |||||||||||||||||||| ||||||||||||||| || |||||| || ||||||| |||||        
T  23082188 ataatcaggcataaaataaggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttacagaaatgcctaaaacatgttggaacatagtt 23082089  T
Q  155 tcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||| ||| ||||| |||| |||||||||||| ||| ||||||| ||||||||||| ||||||    
T  23082088 tccaacatcacaatcatggatatttgttttagcaataatgcagccaatacaaatacccaaca 23082027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 73 - 194
Target Start/End: Complemental strand, 26132349 - 26132228
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatg 172  Q
    |||||||||||| | |||||||||||||||||||| ||||||||||||||| |||||||||||| ||||||| |||||   |||| | | ||||||||||    
T  26132349 aggcacactgaaccgtgccaggatgttggaacatcatatccaacatcttacagagatgcctgaaacatgttggaacatagtatccaatatcacaaacatg 26132250  T
Q  173 aatatttgttttaacaacaatg 194  Q
     |||||||||||| ||| ||||    
T  26132249 gatatttgttttagcaataatg 26132228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 10280600 - 10280752
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaac 163  Q
    ||||| ||||||||||||||| | || ||||||||||||| |||||||||||||| || |  | ||||||||| ||||||  |||||   |||| |||||    
T  10280600 catgatacaaggcacactgaaccgtggcaggatgttggaatatcgtatccaacatttttcttatatgcctgaaacatgttagaacatagtatccaacaac 10280699  T
Q  164 acaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||| ||||| |||||| ||||| ||||||||||| ||||||||||| ||||||    
T  10280700 acagacatggatatttattttagcaacaatgcagccaatacaaatacccaaca 10280752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 20992236 - 20992453
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  ||||||||||||||| ||||||||||| |||| |  |   ||| | ||| || |||||| | |||||||||||| | |||||||||||||    
T  20992236 cttggtcaataagataaggaaatattgtttccttaaacaataaagagtgcgcgtacaaataggcatgaacctaggcacactgaaccgtgccaggatgttg 20992335  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaacatgaatatttgttttaacaacaatgcaga 198  Q
    ||||||| ||||||||||||||| ||||||||| |||  ||||| ||||| |   ||| ||  ||| ||||| | |||||||||||| ||| |||||||     
T  20992336 gaacatcatatccaacatcttacagagatgcctaaacaaatgttaaaacactggttccaacttacataaacaaggatatttgttttagcaataatgcagc 20992435  T
Q  199 caatacaaatatccaaca 216  Q
    ||||||||||| ||||||    
T  20992436 caatacaaatacccaaca 20992453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 72 - 216
Target Start/End: Original strand, 24902870 - 24903013
Alignment:
Q  72 aaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacat 171  Q
    ||||||||||||| | ||| |||||||||||||||| ||||||||||||    || |||||| || ||||||| |||||   |||| ||| |||||||||    
T  24902870 aaggcacactgaaccgtgc-aggatgttggaacatcatatccaacatctcgtagaaatgcctaaaacatgttggaacatagtatccaacatcacaaacat 24902968  T
Q  172 gaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    | |||||||||||| ||| ||||||| ||||||||||||||||||    
T  24902969 ggatatttgttttaccaataatgcagccaatacaaatatccaaca 24903013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 217
Target Start/End: Original strand, 4459446 - 4459650
Alignment:
Q  15 taaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatcca 114  Q
    ||||||||||| |||||| |||| |||| |  ||  ||| | ||| || |||||| | |||||||||||||| ||| ||||||||||||||| |||||||    
T  4459446 taaggaaatattgtttccataaacaataaagggcgcgcgtacaaataggcatgaacctaggcacactgaatcgtgctaggatgttggaacattgtatcca 4459545  T
Q  115 acatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatcc 212  Q
    ||||||||| ||||||||| |||  |||||| ||||||   ||| ||  ||| ||||| | |||||||||||| ||||||| ||| ||| ||||||| ||    
T  4459546 acatcttacagagatgcctaaacagatgttggaacattggttccaacttacagaaacaaggatatttgttttagcaacaatacagccaacacaaataccc 4459645  T
Q  213 aacag 217  Q
    |||||    
T  4459646 aacag 4459650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 143
Target Start/End: Original strand, 23960789 - 23960860
Alignment:
Q  72 aaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgtt 143  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||| || ||||||    
T  23960789 aaggcacactgaatcgtgccaggatgttggaacatcgtatccaacatcttacagaaatgcctaaaacatgtt 23960860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 16207347 - 16207215
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    |||| ||| |||||||||||||||| ||||||||||| |||| |  |   ||| | ||  || |||||| | |||||||||||| | |||||||||||||    
T  16207347 cttgatcaacaagataaggaaatattgtttccttaaacaataaagggtgcgcgtacaagtaggcatgaacccaggcacactgaaccatgccaggatgttg 16207248  T
Q  101 gaacatcgtatccaacatcttacggagatgcct 133  Q
    ||||||| ||||||||||||||| |||||||||    
T  16207247 gaacatcatatccaacatcttacagagatgcct 16207215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 12326505 - 12326721
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  ||||||||||||||| ||||||||||| |||| |  |   ||| | ||  || |||||| | | |||||||||| | |||||||||||||    
T  12326505 cttggtcaataagataaggaaatattgtttccttaaacaataaagagtgcgcgtacaagtaggcatgaacccatgcacactgaaccgtgccaggatgttg 12326604  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaacatgaatatttgttttaacaacaatgcaga 198  Q
    ||||||||||||||||||||||  ||||||||| ||| ||||||| ||| ||   ||| ||  |||| | || | |||||||||||| ||| |||||||     
T  12326605 gaacatcgtatccaacatcttatagagatgcctaaacacatgttggaacctttgttccaacttacac-accaaggatatttgttttagcaataatgcagc 12326703  T
Q  199 caatacaaatatccaaca 216  Q
    ||||||||||| ||||||    
T  12326704 caatacaaatacccaaca 12326721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 83 - 137
Target Start/End: Complemental strand, 16221957 - 16221903
Alignment:
Q  83 aatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac 137  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||| ||||    
T  16221957 aatcatgccaggatgttggaacatcgtatccaacatcttacagagatgccagaac 16221903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 144
Target Start/End: Original strand, 10661618 - 10661698
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttg 144  Q
    |||||||  |||||||||||| | ||| ||||||||||||||||||||||||||||||||  | |||||| || |||||||    
T  10661618 catgaaatcaggcacactgaaccgtgctaggatgttggaacatcgtatccaacatcttacataaatgcctaaaacatgttg 10661698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 15507013 - 15507139
Alignment:
Q  91 caggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaacatgaatatttgttttaaca 188  Q
    ||||||||| ||||||||||||||||||||||  ||||||||| ||| ||||||| ||||||   ||| ||  |||| | || | |||||||||||| ||    
T  15507013 caggatgtttgaacatcgtatccaacatcttatagagatgcctaaacacatgttggaacattggttccaacttacac-atcaaggatatttgttttagca 15507111  T
Q  189 acaatgcagacaatacaaatatccaaca 216  Q
    ||||||||| ||||||||||| ||||||    
T  15507112 acaatgcagccaatacaaatacccaaca 15507139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 76 - 193
Target Start/End: Original strand, 42636974 - 42637091
Alignment:
Q  76 cacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaat 175  Q
    ||||||||| | |||||||| ||||||||||||||| ||||||||||| || |||| | || |||||||  |  ||| |||| |||  |||||||||  |    
T  42636974 cacactgaaccgtgccaggacgttggaacatcgtattcaacatcttacagaaatgcttaaaacatgttggcaacttatatccaacattacaaacatgggt 42637073  T
Q  176 atttgttttaacaacaat 193  Q
    |||||||||| |||||||    
T  42637074 atttgttttagcaacaat 42637091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 154 - 216
Target Start/End: Original strand, 10661947 - 10662009
Alignment:
Q  154 atcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||| ||| |||||||||| |||||||||||| ||| ||||||| ||||||||||| ||||||    
T  10661947 atccaacatcacaaacatggatatttgttttagcaataatgcagccaatacaaatacccaaca 10662009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 15438841 - 15438901
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcct 133  Q
    ||||||||| || | || |||||||||  |||||||||||||||||||||| |||||||||    
T  15438841 aggcacacttaaccgtgtcaggatgtttaaacatcgtatccaacatcttacagagatgcct 15438901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 76 - 119
Target Start/End: Original strand, 19295519 - 19295562
Alignment:
Q  76 cacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||||||| | ||||| ||||||||||||||||||||||||||    
T  19295519 cacactgaaccgtgccaagatgttggaacatcgtatccaacatc 19295562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 24814853 - 24814904
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||| ||||||||||||| ||||| ||||||| | ||||||||||||||||    
T  24814853 aaacagggcacactgaatcgtgccaagatgttgaagcatcgtatccaacatc 24814904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 3801872 - 3801914
Alignment:
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||    
T  3801872 atatttgttttagcaacaatgcagccaatacaaatagccaaca 3801914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 217
Target Start/End: Complemental strand, 7585942 - 7585800
Alignment:
Q  75 gcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaa 174  Q
    |||||||||| | | |||||| ||||||||||| |||||  |||||||   | |||||| || ||||||| || ||   |||| ||| ||||| |||| |    
T  7585942 gcacactgaaccgtaccaggaagttggaacatcatatcccgcatcttataaaaatgcctaaaacatgttggaaaatagtatccaacatcacaatcatgga 7585843  T
Q  175 tatttgttttaacaacaatgcagacaatacaaatatccaacag 217  Q
    ||||||||||| ||| ||||||| ||| | |||||||| ||||    
T  7585842 tatttgttttagcaataatgcagccaaaataaatatccgacag 7585800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 11520703 - 11520661
Alignment:
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||    
T  11520703 atatttgttttagcaacaatgcagccaatacaaatacccaaca 11520661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 9567656 - 9567701
Alignment:
Q  74 ggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    |||||||||||   ||| ||||||||||||||||||||||||||||    
T  9567656 ggcacactgaactgtgctaggatgttggaacatcgtatccaacatc 9567701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 15709121 - 15709162
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgt 109  Q
    ||||| ||||||||||| | ||||||||||||||||||||||    
T  15709121 aaacagggcacactgaaccgtgccaggatgttggaacatcgt 15709162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 30226816 - 30226857
Alignment:
Q  79 actgaatcttgccaggatgttggaacatcgtatccaacatct 120  Q
    |||||||| |||||||||||||| ||||||| ||||||||||    
T  30226816 actgaatcatgccaggatgttggcacatcgtgtccaacatct 30226857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 105; Significance: 1e-52; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 21531071 - 21531279
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  |||||||||||||||||||||||||||||||| || ||  ||| | |||||| ||||||||||||||||| ||| | | |||||||||||    
T  21531071 cttggtcaataagataaggaaatatggtttccttaaataataaaaggcgcgcgtacaaacaggcatgaaacaaggcacaccgaaccataccaggatgttg 21531170  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagaca 200  Q
    |||||| |||||||||||||||| |||||||||||| ||||||| |||||   || | ||||||||||||||||||||||||||| ||| ||||||  ||    
T  21531171 gaacattgtatccaacatcttacagagatgcctgaaacatgttggaacatagtattcaacaacacaaacatgaatatttgttttagcaataatgcaacca 21531270  T
Q  201 atacaaata 209  Q
    |||||||||    
T  21531271 atacaaata 21531279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 15329024 - 15329228
Alignment:
Q  11 aagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgta 110  Q
    ||||||||||||||| ||||||||||||| | ||  |   ||| | |||||| || || ||| ||||||| ||| | |||||||||||||||||||||||    
T  15329024 aagataaggaaatattgtttccttaaatagtttag-gtgcgcgtacaaacaggcaagatacatggcacacagaaccgtgccaggatgttggaacatcgta 15329122  T
Q  111 tccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatat 210  Q
    ||||||||||||| || ||||||||| ||||||| ||||||   ||| ||||||||||||||||||||||||||| |||||||| || |||||||||||     
T  15329123 tccaacatcttacagacatgcctgaatcatgttggaacattggttccaacaacacaaacatgaatatttgttttagcaacaatgtagccaatacaaatac 15329222  T
Q  211 ccaaca 216  Q
    ||||||    
T  15329223 ccaaca 15329228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 64 - 216
Target Start/End: Complemental strand, 21249601 - 21249448
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaac 163  Q
    |||||||||||||||||| || | |||||||||||||||||||||||||||||||||||| || ||||||||| ||||||| |||||   |||| |||||    
T  21249601 catgaaacaaggcacactaaaccgtgccaggatgttggaacatcgtatccaacatcttacagaaatgcctgaaacatgttggaacatagtatccaacaac 21249502  T
Q  164 acaaacatgaatatttgttttaacaacaa-tgcagacaatacaaatatccaaca 216  Q
    |||| |||| |||||||||||| ||| || ||| | ||||||||||| ||||||    
T  21249501 acaatcatggatatttgttttaccaataattgctgccaatacaaatacccaaca 21249448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 24789553 - 24789478
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaa 147  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||||| | ||||||||| ||| ||||||||||    
T  24789553 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacatcttccagagatgcctaaacacatgttgaaa 24789478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 27108203 - 27108254
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||| ||||||||||| | ||||||||||||||||||||||||||||||||    
T  27108203 aaacatggcacactgaaccgtgccaggatgttggaacatcgtatccaacatc 27108254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 27111792 - 27111843
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||| |||||| |||| | ||||||||||||||||||||||||||||||||    
T  27111792 aaacagggcacattgaaccgtgccaggatgttggaacatcgtatccaacatc 27111843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 36397889 - 36397839
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacat 118  Q
    ||||| ||||||||||| | ||||| |||||||||||||||||||||||||    
T  36397889 aaacagggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 36397839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 167 - 216
Target Start/End: Original strand, 23759484 - 23759533
Alignment:
Q  167 aacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||| |||||||||||||| ||||||||||| ||||||||||| ||||||    
T  23759484 aacaagaatatttgttttagcaacaatgcagccaatacaaatacccaaca 23759533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 24311246 - 24311201
Alignment:
Q  74 ggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||||||||| | ||||||||||||||||||| ||||||||||||    
T  24311246 ggcacactgaaccgtgccaggatgttggaacattgtatccaacatc 24311201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 12911359 - 12911401
Alignment:
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||    
T  12911359 atatttgttttagcaacaatgcagccaatacaaatacccaaca 12911401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 6e-52; HSPs: 40)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 15930314 - 15930099
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  ||||||||||||||||||||||||||||| ||||| ||  | | | |||||  ||||||||||||||||||||| | |||||||||||||    
T  15930314 cttggtcaataagataaggaaatatggtttccttaaatagtataaggcgcgtgtacaaacatgcatgaaacaaggcacactgaaccgtgccaggatgttg 15930215  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagaca 200  Q
    ||||||||||||||| ||||||| |||||||||||| ||||||  ||||||  |||  ||||||||||||||||||||||||||| ||| |  |||| ||    
T  15930214 gaacatcgtatccaatatcttacagagatgcctgaaacatgtttgaacattgtatcaaacaacacaaacatgaatatttgttttagcaatatagcagcca 15930115  T
Q  201 atacaaatatccaaca 216  Q
    ||||||||| ||||||    
T  15930114 atacaaatacccaaca 15930099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 23882164 - 23881990
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| ||| | | | |||||| ||||||||||||||||||||| | || ||||||||||    
T  23882164 cttggtcaataagataaggaaatatggtttccttaaataatataaagcacgtgtacaaacaggcatgaaacaaggcacactgaaccgtgtcaggatgttg 23882065  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaat 175  Q
    |||||||||||||||||||||||  |||||||| ||  |||| | ||||||  |||| |||||||||||||||||    
T  23882064 gaacatcgtatccaacatcttacaaagatgcctaaaatatgtaggaacattgtatccaacaacacaaacatgaat 23881990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 29253148 - 29252927
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcata-aacagacatgaaacaaggcacactgaatcttgccaggatgtt 99  Q
    ||||||||  |||||||| ||||| |||||||||||||||||| | ||  ||| | | ||||  || || ||| ||||||||||| | ||||||||||||    
T  29253148 cttggtcaataagataagaaaatacggtttccttaaataatattaggcgcgcgtacataacaagcaagatacatggcacactgaaccgtgccaggatgtt 29253049  T
Q  100 ggaacatcgt---atccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgca 196  Q
    ||||||||||   |||||||||||||  || ||||||||||||||||| ||||||   ||| ||| |||||||||| |||||||||||| ||||||| ||    
T  29253048 ggaacatcgtcgtatccaacatcttaaagacatgcctgaaccatgttggaacattggttccaacatcacaaacatggatatttgttttagcaacaataca 29252949  T
Q  197 gacaatacaaatatccaacagt 218  Q
    | ||||| ||||| ||||||||    
T  29252948 gtcaatataaatacccaacagt 29252927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 63 - 216
Target Start/End: Complemental strand, 12385262 - 12385109
Alignment:
Q  63 acatgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaa 162  Q
    ||||||| | |||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||| || ||||||| ||||||   ||| | ||    
T  12385262 acatgaacccaggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttacagagatgcctaaaacatgttggaacattgtctccaataa 12385163  T
Q  163 cacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
     |||||||   |||||||||||| ||| ||||||| ||||||||||| ||||||    
T  12385162 tacaaacaatgatatttgttttagcaataatgcagccaatacaaatacccaaca 12385109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 57 - 136
Target Start/End: Original strand, 19598430 - 19598509
Alignment:
Q  57 aaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaa 136  Q
    |||||| ||||||||||||||||||||| | || ||||||||||||||||||||||||||||||||| ||||||||||||    
T  19598430 aaacaggcatgaaacaaggcacactgaaccgtgtcaggatgttggaacatcgtatccaacatcttacagagatgcctgaa 19598509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 220
Target Start/End: Original strand, 17235359 - 17235507
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaaca 170  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||||||| |||| |||| ||| ||||||| ||||||   ||| ||  ||| |||||    
T  17235359 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacatcttacagagacgcctaaacacatgttggaacattgattccaacttaca-aaaca 17235457  T
Q  171 tgaatatttgttttaacaacaatgcagacaatacaaatatccaacagttc 220  Q
       |||||||||||| ||||||||||| ||||||||||| ||||||||||    
T  17235458 aagatatttgttttagcaacaatgcagtcaatacaaatacccaacagttc 17235507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 13196080 - 13196233
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-a 161  Q
    |||||| | |||||||||||| | |||||||||||||||||||||||||||||||||||  |||||| || ||| ||||||| ||||||   ||| ||      
T  13196080 catgaacccaggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttatagagatgtctaaacacatgttggaacattggttccaactt 13196179  T
Q  162 acacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||| ||||| | |||||||||||| ||| ||||||| ||||||||||| ||||||    
T  13196180 aca-aaacaaggatatttgttttagcaataatgcagccaatacaaatacccaaca 13196233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 2 - 209
Target Start/End: Complemental strand, 17863939 - 17863731
Alignment:
Q  2 ttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttgg 101  Q
    |||||||  ||||||||||||||| ||||||||||| |||| |  ||   || | ||| || |||||| | |||||  ||||| | ||| | ||||||      
T  17863939 ttggtcaataagataaggaaatattgtttccttaaacaataaagggcgcacgtacaaataggcatgaacccaggcagtctgaaccgtgctacgatgttaa 17863840  T
Q  102 aacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagaca 200  Q
    |||||| ||||| ||||||||| ||||||||| ||| ||||||| ||||||   ||| |||||||||||| | |||||||||||| ||||||||||| ||    
T  17863839 aacatcatatccgacatcttacagagatgcctaaacacatgttggaacattggttccaacaacacaaacaaggatatttgttttagcaacaatgcagcca 17863740  T
Q  201 atacaaata 209  Q
    ||| |||||    
T  17863739 atagaaata 17863731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 9281104 - 9280960
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaaca 170  Q
    |||||||||||||| ||||||||||||||| |||| ||||||||||||| | |||| |||| ||| ||||||||||| ||   ||| ||  ||| |||||    
T  9281104 aggcacactgaatcgtgccaggatgttggagcatcatatccaacatctttcagagacgcctaaacacatgttgaaactttggttccaacttaca-aaaca 9281006  T
Q  171 tgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
     |||||||||||||| |||||||| || | ||||||||| ||||||    
T  9281005 agaatatttgttttagcaacaatgtagccgatacaaatacccaaca 9280960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 68 - 217
Target Start/End: Original strand, 24564474 - 24564623
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaa 167  Q
    ||||||||||||||||||| ||| ||||| || |||||||  |||||||||| |  | | |||||| || ||||||| |||||   |||| ||| || ||    
T  24564474 aaacaaggcacactgaatcgtgctaggatatttgaacatcacatccaacatcctgtgaaaatgcctaaaacatgttggaacatggtatccaacatcataa 24564573  T
Q  168 acatgaatatttgttttaacaacaatgcagacaatacaaatatccaacag 217  Q
     |||| |||||| ||||| ||| ||||||| |||||||||||||||||||    
T  24564574 tcatggatatttattttagcaaaaatgcagccaatacaaatatccaacag 24564623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 76 - 207
Target Start/End: Complemental strand, 12039101 - 12038968
Alignment:
Q  76 cacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaacatga 173  Q
    ||||||||| | ||||| ||||||||||||| | |||||||||||||| ||||||||| ||| ||||||| |||||||  | | ||  ||||| | | |     
T  12039101 cacactgaaccgtgccaagatgttggaacattgcatccaacatcttacagagatgcctaaacacatgttggaacattaatttcaacttacacacataagg 12039002  T
Q  174 atatttgttttaacaacaatgcagacaatacaaa 207  Q
    |||||||||||| ||| |||||||||||||||||    
T  12039001 atatttgttttatcaataatgcagacaatacaaa 12038968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 218
Target Start/End: Original strand, 20653772 - 20653981
Alignment:
Q  11 aagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgta 110  Q
    ||||||||||||||| ||||||||||| |||| |  ||  ||| | ||  || |||||| | || ||||||||| | | ||||||| ||||||||||  |    
T  20653772 aagataaggaaatattgtttccttaaacaataaagggcgcgcgtaaaagtaggcatgaacccagacacactgaaccgttccaggatcttggaacatcaca 20653871  T
Q  111 tccaacatcttacggagatgcctgaac-catgttgaaacattacatcctaca-acacaaacatgaatatttgttttaacaacaatgcagacaatacaaat 208  Q
    ||||||||||||  ||||||||| ||| ||||||| ||||||   | | ||  ||||| | | | |||||||||||| ||| ||||||||||||||||||    
T  20653872 tccaacatcttatagagatgcctaaacacatgttggaacattgatttcaacttacacacataaggatatttgttttagcaataatgcagacaatacaaat 20653971  T
Q  209 atccaacagt 218  Q
    | ||||||||    
T  20653972 acccaacagt 20653981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 25806101 - 25806222
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  ||||||||||||||| |||||||| || |||  |  |||  || | | |||| |||||| | || ||||||||| | |||||||||||||    
T  25806101 cttggtcaataagataaggaaatattgtttccttcaacaatgaatggcacccgtacatacaggcatgaacccagacacactgaaccgtgccaggatgttg 25806200  T
Q  101 gaacatcgtatccaacatctta 122  Q
    ||||||||||||||||||||||    
T  25806201 gaacatcgtatccaacatctta 25806222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 133
Target Start/End: Complemental strand, 21722802 - 21722742
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcct 133  Q
    |||||||||||| | ||||||||||||||||||| |||||||||||||||| ||| |||||    
T  21722802 aggcacactgaaccatgccaggatgttggaacattgtatccaacatcttacagagttgcct 21722742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 23879650 - 23879726
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaac 148  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||||| | |||| |||| ||| |||||||||||    
T  23879650 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacatcttccagagacgcctaaacacatgttgaaac 23879726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 19077908 - 19078048
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacat 171  Q
    |||||||||||| | ||||| ||||||||||||||||||||||||||||||  | |||||| ||| ||||||| ||| || || | ||||     | ||     
T  19077908 aggcacactgaaccgtgccaagatgttggaacatcgtatccaacatcttacaaacatgcctaaacacatgttggaacgttccaacttaca----catcaa 19078003  T
Q  172 gaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||||||||||||||  |||||| ||| ||||||||||| ||||||    
T  19078004 gaatatttgttttagaaacaattcagccaatacaaatacccaaca 19078048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 61 - 216
Target Start/End: Complemental strand, 26964959 - 26964805
Alignment:
Q  61 agacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctac 160  Q
    |||||| ||||||||||||||||| | || ||| ||||||||||||| ||||||||||||   | | ||  |  || ||||||| |||||   |||| ||    
T  26964959 agacataaaacaaggcacactgaaccgtgtcagaatgttggaacatcatatccaacatctcgtgaaaatttccaaaacatgttggaacatagtatccaac 26964860  T
Q  161 aacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    | || | ||||| |||||||||||| ||||||||||| ||||||||||| ||||||    
T  26964859 atca-acacatggatatttgttttagcaacaatgcagccaatacaaatacccaaca 26964805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 146
Target Start/End: Complemental strand, 19894062 - 19893988
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaa 146  Q
    |||||||||||| | ||||| ||||||||| |||||||||||||||||| | ||||||||| ||| |||||||||    
T  19894062 aggcacactgaaccgtgccaagatgttggagcatcgtatccaacatcttccagagatgcctaaacacatgttgaa 19893988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 34639605 - 34639555
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacat 118  Q
    ||||||||||||||||| | ||||| |||||||||||||||||||||||||    
T  34639605 aaacaaggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 34639555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 75 - 151
Target Start/End: Complemental strand, 13869794 - 13869717
Alignment:
Q  75 gcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacatt 151  Q
    |||||||||| | |||||||||||||||| || | ||||||||||||||  |||||||| ||| ||||||||||||||    
T  13869794 gcacactgaaccgtgccaggatgttggaaaattgcatccaacatcttacaaagatgcctaaacacatgttgaaacatt 13869717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 19658683 - 19658731
Alignment:
Q  72 aaggcacactgaatcttgccaggatgttggaacatcgtatccaacatct 120  Q
    ||||||||||||||| ||| |||||||||||||||| ||||||||||||    
T  19658683 aaggcacactgaatcgtgctaggatgttggaacatcatatccaacatct 19658731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 33666556 - 33666698
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacat 171  Q
    |||||||||||| | ||||||||||||||| |||| ||||||||||||| |  ||| |||| ||| ||||||||||||||   ||| ||   || | ||     
T  33666556 aggcacactgaaccgtgccaggatgttggagcatcatatccaacatcttccaaagacgcctaaacacatgttgaaacattggttccaac-ttac-atcaa 33666653  T
Q  172 gaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    | |||||||||||| ||||||||||| ||||||||||| ||||||    
T  33666654 ggatatttgttttagcaacaatgcagccaatacaaatacccaaca 33666698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 123
Target Start/End: Complemental strand, 11992424 - 11992365
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttac 123  Q
    |||||| | |||||||||||||| ||| ||||||||| ||||| ||||||||||||||||    
T  11992424 catgaacccaggcacactgaatcgtgctaggatgttgaaacattgtatccaacatcttac 11992365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 25970442 - 25970521
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacatt 151  Q
    |||||||||||| | ||||| ||||||||| |||| ||||||||||||||| |||| |||| ||| ||||||| ||||||    
T  25970442 aggcacactgaaccgtgccaagatgttggagcatcatatccaacatcttacagagacgcctaaacacatgttggaacatt 25970521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 25974882 - 25974961
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacatt 151  Q
    |||||||||||| | ||||| ||||||||| |||| ||||||||||||||| |||| |||| ||| ||||||| ||||||    
T  25974882 aggcacactgaaccgtgccaagatgttggagcatcatatccaacatcttacagagacgcctaaacacatgttggaacatt 25974961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 11961230 - 11961280
Alignment:
Q  69 aacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    |||||| |||||| || | ||||||||||||||||||||||||||||||||    
T  11961230 aacaagacacactaaaccgtgccaggatgttggaacatcgtatccaacatc 11961280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 64 - 216
Target Start/End: Complemental strand, 20989193 - 20989040
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-a 161  Q
    |||||| |||| ||||||||| | ||  |||||||| ||||||||||||||| |||||||  |||||||| ||| ||||||| ||| ||   ||| ||      
T  20989193 catgaaccaagacacactgaaccgtgtgaggatgtttgaacatcgtatccaatatcttacatagatgcctaaacacatgttggaacttttgttccaactt 20989094  T
Q  162 acacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||| | || |||||||||||||| ||||||||||  ||||||||||| ||||||    
T  20989093 acac-agcaagaatatttgttttagcaacaatgcatccaatacaaatacccaaca 20989040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 8465061 - 8465012
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatctta 122  Q
    ||||||||| || | ||||||||||||||||||| |||||||||||||||    
T  8465061 aggcacactaaaccgtgccaggatgttggaacattgtatccaacatctta 8465012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 119
Target Start/End: Original strand, 24542348 - 24542465
Alignment:
Q  2 ttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttgg 101  Q
    |||||||  ||||||||||||||||||||||||||||||||  | |   | | | ||  || |||||| | ||||| ||| || | |||||| |||||||    
T  24542348 ttggtcaataagataaggaaatatggtttccttaaataatactaggtgcgtgtacaagtaggcatgaacccaggcatactaaaccgtgccagaatgttgg 24542447  T
Q  102 aacatcgtatccaacatc 119  Q
    ||||||||||||||||||    
T  24542448 aacatcgtatccaacatc 24542465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 20764399 - 20764351
Alignment:
Q  71 caaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    |||||||||||||| ||||||||||||||| |||||  |||||||||||    
T  20764399 caaggcacactgaaccttgccaggatgttgaaacattatatccaacatc 20764351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 21316992 - 21316941
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||| |||||||||||   |||||||||||||||||||| |||||||||||    
T  21316992 aaacagggcacactgaactatgccaggatgttggaacatcatatccaacatc 21316941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 24542683 - 24542738
Alignment:
Q  154 atcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaata 209  Q
    |||| ||| |||||||||| |||||||||||| ||| ||||||| |||||||||||    
T  24542683 atccaacatcacaaacatggatatttgttttagcaataatgcagtcaatacaaata 24542738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 19168202 - 19168355
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-a 161  Q
    |||||| | ||||||||| || | ||||||||||||||| ||||||| |||||||  ||  ||||||||| ||| ||||||| ||||||   ||| ||      
T  19168202 catgaacccaggcacactaaaccgtgccaggatgttggagcatcgtacccaacattctatagagatgcctaaacacatgttggaacattggttccaactt 19168301  T
Q  162 acacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||| | || | |||||| ||||| ||||||||||| ||||||||||| ||||||    
T  19168302 acac-atcaaggatatttattttagcaacaatgcagccaatacaaatacccaaca 19168355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 149
Target Start/End: Complemental strand, 20465288 - 20465230
Alignment:
Q  92 aggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaaca 149  Q
    |||||||||||||||| ||||||||||||||  ||||||||| ||| ||||||| ||||    
T  20465288 aggatgttggaacatcatatccaacatcttatagagatgcctaaacacatgttggaaca 20465230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 17868297 - 17868220
Alignment:
Q  139 atgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||| ||||||  |||| |||||| ||||||| |||||| ||||| ||| ||||||  ||||||||||| ||||||    
T  17868297 atgttggaacattgtatccaacaacataaacatggatatttattttagcaataatgcaaccaatacaaatacccaaca 17868220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 17868328 - 17868275
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaaca 117  Q
    |||||||| |||||||||||| | || || ||||||||||||| ||||||||||    
T  17868328 catgaaaccaggcacactgaaccgtgtcacgatgttggaacattgtatccaaca 17868275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 139 - 216
Target Start/End: Complemental strand, 17878080 - 17878003
Alignment:
Q  139 atgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||| ||||||  |||| |||||| ||||||| |||||| ||||| ||| ||||||  ||||||||||| ||||||    
T  17878080 atgttggaacattgtatccaacaacataaacatggatatttattttagcaataatgcaaccaatacaaatacccaaca 17878003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 64 - 117
Target Start/End: Complemental strand, 17878111 - 17878058
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaaca 117  Q
    |||||||| |||||||||||| | || || ||||||||||||| ||||||||||    
T  17878111 catgaaaccaggcacactgaaccgtgtcacgatgttggaacattgtatccaaca 17878058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 21705924 - 21705875
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatctta 122  Q
    |||||||||||| | ||||| ||| ||||||||| |||||||||||||||    
T  21705924 aggcacactgaagcatgccaagatattggaacattgtatccaacatctta 21705875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 164 - 209
Target Start/End: Complemental strand, 23880993 - 23880948
Alignment:
Q  164 acaaacatgaatatttgttttaacaacaatgcagacaatacaaata 209  Q
    ||||||||| |||||||||||| ||| ||||||| |||||||||||    
T  23880993 acaaacatggatatttgttttagcaataatgcagccaatacaaata 23880948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 89; Significance: 5e-43; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 2 - 216
Target Start/End: Original strand, 18622355 - 18622566
Alignment:
Q  2 ttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttgg 101  Q
    |||||||  |||||||||||||||| |||||||||||||||||| ||  ||| | | || | || |||||||||||||||||| | ||||| ||||||||    
T  18622355 ttggtcaataagataaggaaatatgatttccttaaataatataaagcgcgcgtacacaccggcaagaaacaaggcacactgaaccgtgccaagatgttgg 18622454  T
Q  102 aacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagacaa 201  Q
    |||||||||||||||||||||| |||||| ||||| ||||||| |||||   |||   ||||||||||| |||||||||||||| ||| ||||||  |||    
T  18622455 aacatcgtatccaacatcttacagagatgtctgaaacatgttggaacatagtatc---caacacaaacaagaatatttgttttagcaataatgcaaccaa 18622551  T
Q  202 tacaaatatccaaca 216  Q
    |||||||| ||||||    
T  18622552 tacaaatacccaaca 18622566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 27924909 - 27924768
Alignment:
Q  11 aagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgta 110  Q
    ||||||||||||||| ||||||||||| |||| |  || |||| | ||  || |||||| | |||||||||||||| || ||||||||||||||||| ||    
T  27924909 aagataaggaaatattgtttccttaaacaataaagagcgtgcgtacaagtaggcatgaacccaggcacactgaatcgtgtcaggatgttggaacatctta 27924810  T
Q  111 tccaacatcttacggagatgcctgaac-catgttgaaacatt 151  Q
    ||||||||||||| || |||||| ||| ||||||| ||||||    
T  27924809 tccaacatcttacagaaatgcctaaacacatgttggaacatt 27924768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 26537055 - 26537196
Alignment:
Q  76 cacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatgaa 174  Q
    ||||||||| | ||||| |||||||||||||| |||||||||||||||||| |||||| ||| ||||||  || |||   ||  |||||||||||| | |    
T  26537055 cacactgaaccgtgccatgatgttggaacatcatatccaacatcttacggatatgcctaaacacatgttagaagattggttctaacaacacaaacaagga 26537154  T
Q  175 tatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||||||||||||||| ||||||   |||||||||| ||||||    
T  26537155 tatttgttttaacaataatgcaactaatacaaatacccaaca 26537196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 33962436 - 33962632
Alignment:
Q  11 aagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgta 110  Q
    ||||||||||||||| ||||||||||| |||| |  ||  ||| | ||| ||||||||    ||||||||||||   |||||||||||||||||||  ||    
T  33962436 aagataaggaaatattgtttccttaaacaataaagggcgcgcgtacaaagagacatgacctcaggcacactgaactgtgccaggatgttggaacataata 33962535  T
Q  111 tccaacatcttacggagatgcctgaa-ccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaata 209  Q
    ||||||||||||| ||||||||| ||  ||||||| ||||||   ||| ||||||||||    ||||||| ||||| ||| ||||||| |||||||||||    
T  33962536 tccaacatcttacagagatgcctaaatacatgttggaacattggttccaacaacacaaa---taatatttattttagcaataatgcagccaatacaaata 33962632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 9997253 - 9997392
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaac 163  Q
    |||||||  |||||||||||| | |||||  |||| | |||||||||||||||||||||| || |||||| || ||||||||||  ||  |||| ||| |    
T  9997253 catgaaatcaggcacactgaaccgtgccaaaatgtag-aacatcgtatccaacatcttacagaaatgcctaaaacatgttgaaaacttgtatccaacatc 9997351  T
Q  164 acaaacatgaatatttgttttaacaacaatgcagacaatac 204  Q
    |||||||||  ||||||||||| |||||||| || ||||||    
T  9997352 acaaacatgggtatttgttttagcaacaatgaagccaatac 9997392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 23540863 - 23540722
Alignment:
Q  11 aagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgta 110  Q
    ||||||||||||||| ||||||||||| |||| |  ||  ||| | ||  || ||| || | ||||||||| ||   |||||||||||||||||||||||    
T  23540863 aagataaggaaatattgtttccttaaacaataaagggcgcgcgtacaagtaggcataaacccaggcacactaaactgtgccaggatgttggaacatcgta 23540764  T
Q  111 tccaacatcttacggagatgcctgaac-catgttgaaacatt 151  Q
    |||| |||||||| ||||||||| ||| ||||||| ||||||    
T  23540763 tccatcatcttacagagatgcctaaacacatgttggaacatt 23540722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 11 - 209
Target Start/End: Original strand, 33977762 - 33977958
Alignment:
Q  11 aagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgta 110  Q
    ||||||||||||||| ||||||||||| |||| |  ||   || | ||| || |||||| | || |||||||||   || ||||||||||||||||  ||    
T  33977762 aagataaggaaatattgtttccttaaacaataaagggcgcacgtacaaataggcatgaacccagacacactgaactgtgtcaggatgttggaacataata 33977861  T
Q  111 tccaacatcttacggagatgcctgaa-ccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaata 209  Q
    ||||||||||||| ||||||||| ||  ||||||| ||||||   ||| ||||||||||    ||||||| ||||| ||| ||||||| |||||||||||    
T  33977862 tccaacatcttacagagatgcctaaatacatgttggaacattggttccaacaacacaaa---taatatttattttagcaataatgcagccaatacaaata 33977958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 216
Target Start/End: Original strand, 9997580 - 9997632
Alignment:
Q  164 acaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||    
T  9997580 acaaacatgaatatttgttttagcaataatgcagccaatacaaatacccaaca 9997632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 72 - 216
Target Start/End: Complemental strand, 20254272 - 20254128
Alignment:
Q  72 aaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacat 171  Q
    ||||||||||||| | || ||||||||||||||||| |||||||||| | || |  |||||| || ||||||| |||||   |||| ||| ||||| |||    
T  20254272 aaggcacactgaaccgtgtcaggatgttggaacatcatatccaacatttcacaggaatgcctaaaacatgttggaacatagtatccaacatcacaatcat 20254173  T
Q  172 gaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    | |||||| ||||| |||  ||| || |||| |||||| ||||||    
T  20254172 ggatatttattttagcaatgatgtagccaatgcaaatacccaaca 20254128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 23250483 - 23250524
Alignment:
Q  74 ggcacactgaatcttgccaggatgttggaacatcgtatccaa 115  Q
    ||||||||||| | |||||||||||||||||||||| |||||    
T  23250483 ggcacactgaaccatgccaggatgttggaacatcgtgtccaa 23250524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 91 - 151
Target Start/End: Original strand, 45136893 - 45136954
Alignment:
Q  91 caggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacatt 151  Q
    ||||||||||||||||| |||||||||||| || ||||| ||| ||| ||||||| ||||||    
T  45136893 caggatgttggaacatcatatccaacatctaacagagatacctaaacacatgttggaacatt 45136954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1001 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold1001
Description:

Target: scaffold1001; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 204
Target Start/End: Original strand, 656 - 858
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  |||||||||||||||||||||||||||||||| || ||  ||| |     || |||||| || ||||||||||| | ||||| |||||||    
T  656 cttggtcaataagataaggaaatatggtttccttaaataatacaaggcgcgcgtaagtgtaggcatgaacca-ggcacactgaaccgtgccaagatgttg 754  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagaca 200  Q
    ||||||||||||||||||||||| || |||||||||||||  || |||||||  ||| ||||||||||||||||||||||||||| |||||||| |||||    
T  755 gaacatcgtatccaacatcttacagacatgcctgaaccatcctggaacattagttccaacaacacaaacatgaatatttgttttagcaacaatgaagaca 854  T
Q  201 atac 204  Q
    ||||    
T  855 atac 858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 82; Significance: 8e-39; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 75 - 216
Target Start/End: Complemental strand, 22082083 - 22081942
Alignment:
Q  75 gcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaa 174  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||  |||||| ||||||   | | |||||||||||||| |    
T  22082083 gcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttacagagatgcctgaaatatgttggaacattgatttcaacaacacaaacatgga 22081984  T
Q  175 tatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||||||||||||||||||| ||| ||||||||||| ||||||    
T  22081983 tatttgttttaacaacaatacagccaatacaaatacccaaca 22081942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 64 - 216
Target Start/End: Original strand, 26037533 - 26037686
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaa 162  Q
    |||||| | |||||||||||| | |||||||||||||||||||||||||| ||||||||| ||||||||| ||| ||||||||||||||   ||| ||||    
T  26037533 catgaaccgaggcacactgaaccatgccaggatgttggaacatcgtatccgacatcttacagagatgcctaaacacatgttgaaacattggttccaacaa 26037632  T
Q  163 cacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||| |||||||||||||| ||| ||||||| ||||||||||| ||||||    
T  26037633 cacaaacaagaatatttgttttagcaataatgcagccaatacaaatacccaaca 26037686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 7e-36
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 20714208 - 20714001
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||| |||||| || || |||||||||||||| || |||| ||  ||| | |||||| ||||||| |||||||||| || | | |||||||||||    
T  20714208 cttggtcagtaagatacgggaaaatggtttccttaaa-aagataaagcgcgcgtacaaacaggcatgaaagaaggcacactaaaccgttccaggatgttg 20714110  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagaca 200  Q
    |||||||||||| |||||||||  |||||||||||| ||||||| ||||| | |||| ||| |  ||||||| |||||||||||| ||| ||||||| ||    
T  20714109 gaacatcgtatctaacatcttatagagatgcctgaaacatgttggaacatgatatccaacatcctaaacatggatatttgttttagcaataatgcagcca 20714010  T
Q  201 atacaaata 209  Q
    |||||||||    
T  20714009 atacaaata 20714001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 11 - 216
Target Start/End: Original strand, 18221812 - 18222018
Alignment:
Q  11 aagataaggaaatatggtttccttaaataatataacgcatgcgcataaa-cagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgt 109  Q
    |||||||||||||| |||||||||||||||| | | |||  || | ||| ||  ||||| ||| ||||||||||| | | ||| |||||||||||||| |    
T  18221812 aagataaggaaatacggtttccttaaataatcttaggcacacgtacaaagcatgcatgatacatggcacactgaaccattccaagatgttggaacatcat 18221911  T
Q  110 atccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaata 209  Q
    ||||||||||||||  | || |||||||||||||| || | |   ||| ||||||||||||||||||||||||||||||||||||||  |||||||||||    
T  18221912 atccaacatcttacaaacatacctgaaccatgttggaaaaatggttccaacaacacaaacatgaatatttgttttaacaacaatgcatccaatacaaata 18222011  T
Q  210 tccaaca 216  Q
     ||||||    
T  18222012 cccaaca 18222018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 38406054 - 38406269
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  ||||||||||||||| ||||||||||| |||| |  ||| ||| | |||||  || || ||| ||||||||||| | ||| |||||| ||    
T  38406054 cttggtcaataagataaggaaatattgtttccttaaacaataaagggcacgcgtacaaacaagcaagatacagggcacactgaaccgtgctaggatgctg 38406153  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagaca 200  Q
    ||||||||||||||||||||||  || ||||||||| ||||||| ||||||   ||| |||||||||||| |||||||||||||| ||| |||  |  ||    
T  38406154 gaacatcgtatccaacatcttatagacatgcctgaatcatgttggaacattggttccaacaacacaaacaagaatatttgttttagcaataataaatcca 38406253  T
Q  201 atacaaatatccaaca 216  Q
    ||||||||| ||||||    
T  38406254 atacaaatacccaaca 38406269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 214
Target Start/End: Complemental strand, 23419936 - 23419809
Alignment:
Q  88 tgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatgaatatttgttttaa 186  Q
    ||||||||||||||| ||| |||||||||||||||| |||| |||| ||| ||||||||||||||    || |||||||||||| |||||||||||||||    
T  23419936 tgccaggatgttggagcattgtatccaacatcttacagagacgcctaaacacatgttgaaacattggtaccaacaacacaaacaagaatatttgttttaa 23419837  T
Q  187 caacaatgcagacaatacaaatatccaa 214  Q
    ||||||||||| ||||||||||| ||||    
T  23419836 caacaatgcagccaatacaaatacccaa 23419809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 74 - 216
Target Start/End: Original strand, 23624607 - 23624749
Alignment:
Q  74 ggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatga 173  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||| || |||| |||| |||||||  |||||   ||| |||||| ||||| |     
T  23624607 ggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttacagacatgcttgaatcatgttgggacattggttccaacaacagaaacaagg 23624706  T
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||||||| ||| ||||||| ||||||||||| ||||||    
T  23624707 atatttgttttagcaataatgcagccaatacaaatacccaaca 23624749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 13941414 - 13941266
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaa 167  Q
    |||| ||||||| |||| | || ||||||||||||||||| |||||||||||||||  | |||||| || ||||||| |||||   |||| |||||||||    
T  13941414 aaactaggcacattgaaccatgtcaggatgttggaacatcatatccaacatcttacaaaaatgcctaaaacatgttggaacatggtatccaacaacacaa 13941315  T
Q  168 acatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||||| |||||||||||| ||| ||||||| ||||||||| | ||||||    
T  13941314 acatggatatttgttttagcaataatgcagccaatacaaaaacccaaca 13941266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 93 - 216
Target Start/End: Complemental strand, 26328590 - 26328467
Alignment:
Q  93 ggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaa 192  Q
    |||||||||||||||||||||||||||| ||  |||| |||| | ||||||| ||||||   ||| |||||||| |||||||||||||||||| ||| ||    
T  26328590 ggatgttggaacatcgtatccaacatctcacatagatacctgtaacatgttggaacattggttccaacaacacatacatgaatatttgttttagcaataa 26328491  T
Q  193 tgcagacaatacaaatatccaaca 216  Q
    ||||  ||||| ||||| ||||||    
T  26328490 tgcaaccaatataaatacccaaca 26328467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 23757648 - 23757506
Alignment:
Q  76 cacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaacatga 173  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||  ||||||||| ||| ||||||| ||||||   ||| || |||||| | | |     
T  23757648 cacactgaatcgtgccaggatgttggaacatcgtatccaacatcatatagagatgcctaaacacatgttggaacattggttccaactaacacata-aagg 23757550  T
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaacag 217  Q
    |||||||||||| ||||||||||  || |||||||| |||||||    
T  23757549 atatttgttttagcaacaatgcacccagtacaaatacccaacag 23757506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 76 - 217
Target Start/End: Complemental strand, 23823104 - 23822962
Alignment:
Q  76 cacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaacatga 173  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||  ||||||||| ||| ||||||| ||||||   ||| || |||||| | | |     
T  23823104 cacactgaatcgtgccaggatgttggaacatcgtatccaacatcatatagagatgcctaaacacatgttggaacattggttccaactaacacata-aagg 23823006  T
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaacag 217  Q
    |||||||||||| ||||||||||  || |||||||| |||||||    
T  23823005 atatttgttttagcaacaatgcacccagtacaaatacccaacag 23822962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 22251435 - 22251291
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaaca 170  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||||| |  ||| |||| ||| ||||||||||| ||   ||| ||  ||| |||||    
T  22251435 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacatctttcaaagacgcctaaacacatgttgaaactttggttccaacttaca-aaaca 22251337  T
Q  171 tgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
     | |||||||||||| ||||||||||| ||||||||||| ||||||    
T  22251336 aggatatttgttttagcaacaatgcagccaatacaaatacccaaca 22251291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 73 - 129
Target Start/End: Complemental strand, 30605085 - 30605029
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagat 129  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||| |||||    
T  30605085 aggcacactgaaccgtgccaggatgttggaacatcgtatccaacatcttacagagat 30605029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 79 - 217
Target Start/End: Complemental strand, 22404149 - 22404010
Alignment:
Q  79 actgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacaca-aacatgaata 176  Q
    |||||| | ||||||||||||||||||| |||||||||||||| | |||| |||| ||| ||||||| ||| ||   ||| ||   ||| |||| | |||    
T  22404149 actgaaccatgccaggatgttggaacattgtatccaacatcttccagagacgcctaaacacatgttggaactttggttccaactt-acagaacaaggata 22404051  T
Q  177 tttgttttaacaacaatgcagacaatacaaatatccaacag 217  Q
    ||||||||| ||||||||||| ||||||||||| |||||||    
T  22404050 tttgttttagcaacaatgcagccaatacaaatacccaacag 22404010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 75 - 217
Target Start/End: Original strand, 24190630 - 24190773
Alignment:
Q  75 gcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacaca-aacatg 172  Q
    |||||||||| | |||||| |||||||| |||||||||||||||||| |  ||| |||| ||| ||||||| ||| |||  ||| ||   ||| |||| |    
T  24190630 gcacactgaaccgtgccagaatgttggagcatcgtatccaacatcttccaaagacgcctaaacacatgttggaactttagttccaactt-acagaacaag 24190728  T
Q  173 aatatttgttttaacaacaatgcagacaatacaaatatccaacag 217  Q
     |||||||||||| ||||||||||| ||||||||||| |||||||    
T  24190729 gatatttgttttagcaacaatgcagccaatacaaatacccaacag 24190773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 22183717 - 22183666
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||| ||||||||||| | ||||| ||| ||||||||||||||||||||||    
T  22183717 aaacagggcacactgaaccgtgccaagatattggaacatcgtatccaacatc 22183666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 22240270 - 22240228
Alignment:
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||    
T  22240270 atatttgttttagcaacaatgcagccaatacaaatacccaaca 22240228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 20127705 - 20127753
Alignment:
Q  74 ggcacactgaatcttgccaggatgttggaacatcgtatccaacatctta 122  Q
    ||||||||||| | | ||  |||||||||||||||||||||||||||||    
T  20127705 ggcacactgaaccgtacccagatgttggaacatcgtatccaacatctta 20127753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 81; Significance: 3e-38; HSPs: 26)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 64 - 216
Target Start/End: Complemental strand, 286303 - 286151
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaac 163  Q
    ||||||||||| ||||||||| | ||| |||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||   |||| ||| |    
T  286303 catgaaacaagacacactgaaccgtgctaggatgttggaacatcgtatccaacatcttacagagatgcctgaaacatgttggaacatagtatccaacatc 286204  T
Q  164 acaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||||||||||| ||||| |||  |||||| ||||||||||| ||||||    
T  286203 acaaacatgaatatttattttagcaatgatgcagccaatacaaatacccaaca 286151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 117
Target Start/End: Complemental strand, 21253463 - 21253347
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  ||||||||||||||||| || |||||||||||||| ||| ||| | |||||| ||||||||||||||||||||| | || ||||||||||    
T  21253463 cttggtcaataagataaggaaatatgggtttcttaaataatataaagcacgcgtacaaacaggcatgaaacaaggcacactgaaccgtgtcaggatgttg 21253364  T
Q  101 gaacatcgtatccaaca 117  Q
    |||||||||||| ||||    
T  21253363 gaacatcgtatctaaca 21253347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 216
Target Start/End: Original strand, 21547566 - 21547692
Alignment:
Q  91 caggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaa 189  Q
    ||||| ||||||||||||||||||||||||||  ||||||| | ||| ||||||| ||||||   ||| |||||||||||| |||||||| ||||| |||    
T  21547566 caggaagttggaacatcgtatccaacatcttatagagatgcataaacacatgttggaacattggttccaacaacacaaacaagaatatttattttagcaa 21547665  T
Q  190 caatgcagacaatacaaatatccaaca 216  Q
     ||||||| ||||||||||| ||||||    
T  21547666 taatgcagccaatacaaatacccaaca 21547692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 88 - 209
Target Start/End: Original strand, 28051918 - 28052040
Alignment:
Q  88 tgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatgaatatttgttttaa 186  Q
    |||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||   ||| |||||||||| |   ||||||||||||     
T  28051918 tgccaggatgttggaacatcgtatccaacatcttacagagatgcctaaacacatgttggaacattggttccaacaacacaaataaagatatttgttttag 28052017  T
Q  187 caacaatgcagacaatacaaata 209  Q
    ||| ||||||  |||||||||||    
T  28052018 caataatgcaaccaatacaaata 28052040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 216
Target Start/End: Complemental strand, 3551878 - 3551731
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaa 167  Q
    ||||||||||||||||| | ||||| |||||||||||||| ||||||||||||||| || ||| || ||  || ||| || ||   |||| ||| |||||    
T  3551878 aaacaaggcacactgaaccgtgccacgatgttggaacatcatatccaacatcttacagaaatgtctaaaagat-ttggaatatagtatcccacatcacaa 3551780  T
Q  168 acatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||||| |||||||||||| ||| ||||||| ||||||||||| ||||||    
T  3551779 acatggatatttgttttagcaataatgcagccaatacaaatacccaaca 3551731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 65 - 204
Target Start/End: Complemental strand, 6578951 - 6578812
Alignment:
Q  65 atgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaaca 164  Q
    ||||||| || ||||||||| | || ||||||||||||||||||||||||||||||||| || |||||| || |||||||  |  |   |||| ||| ||    
T  6578951 atgaaaccagacacactgaaccgtgtcaggatgttggaacatcgtatccaacatcttacagaaatgcctaaaacatgttggcaactcgtatccaacatca 6578852  T
Q  165 caaacatgaatatttgttttaacaacaatgcagacaatac 204  Q
    ||||||||| ||||||||||| |||||||| || ||||||    
T  6578851 caaacatgagtatttgttttagcaacaatgaagccaatac 6578812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 18063673 - 18063464
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  ||||||||||||||| ||||||||||| |||  || ||   || | | | || || ||| |||||||||||||| | |||||||||||||    
T  18063673 cttggtcaataagataaggaaatattgtttccttaaacaatgaaaggcgcacgtacatataggcaagaaccaaggcacactgaaccgtgccaggatgttg 18063574  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccat--gttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcaga 198  Q
    |||| ||||||||||||||||||  |||||||| || |||  |||||||||||   ||| ||| |||| ||| | |||||||||||| |||| ||| |      
T  18063573 gaacgtcgtatccaacatcttacaaagatgcct-aatcatacgttgaaacattggttccaacaccacatacaaggatatttgttttagcaactatgtaac 18063475  T
Q  199 caatacaaata 209  Q
    |||||||||||    
T  18063474 caatacaaata 18063464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 68 - 214
Target Start/End: Complemental strand, 979780 - 979634
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaa 167  Q
    ||||||||||||||||| | ||||  |||||||||||||| ||||||||||||||| || || ||| ||  |||||| |||||   |||| ||| |||||    
T  979780 aaacaaggcacactgaaccgtgccgagatgttggaacatcatatccaacatcttacagaaatacctaaaatatgttggaacatagtatccaacatcacaa 979681  T
Q  168 acatgaatatttgttttaacaacaatgcagacaatacaaatatccaa 214  Q
     |||  |||||||||||| ||| |||| || ||||||||||| ||||    
T  979680 tcatagatatttgttttagcaataatgtagccaatacaaatacccaa 979634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 119
Target Start/End: Complemental strand, 17042220 - 17042108
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| ||  |||  |    || |||||| | |||||||||||| | ||||||||||| |    
T  17042220 cttggtcaataagataaggaaatatggtttccttaaataatataaggc--gcgtgt----aggcatgaacccaggcacactgaaccgtgccaggatgtcg 17042127  T
Q  101 gaacatcgtatccaacatc 119  Q
    |||||||||||||||||||    
T  17042126 gaacatcgtatccaacatc 17042108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 221
Target Start/End: Complemental strand, 13515010 - 13514863
Alignment:
Q  75 gcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaacatg 172  Q
    |||||||||| | ||| |||||||||||||||||||||||||||||||| ||||||| | ||| ||||||| ||||||   ||| ||  |||| | |  |    
T  13515010 gcacactgaaccgtgctaggatgttggaacatcgtatccaacatcttacagagatgcttaaacacatgttggaacattggttccaacttacac-atcgag 13514912  T
Q  173 aatatttgttttaacaacaatgcagacaatacaaatatccaacagttct 221  Q
     |||||||||||| ||||||||||| ||||||||||| |||||| ||||    
T  13514911 gatatttgttttagcaacaatgcagccaatacaaatacccaacacttct 13514863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 6578634 - 6578572
Alignment:
Q  154 atcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||| ||| |||||||||| |||||||||||| ||| ||||||| ||||||||||||||||||    
T  6578634 atccaacatcacaaacatggatatttgttttagcaataatgcagccaatacaaatatccaaca 6578572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 73 - 217
Target Start/End: Complemental strand, 17135539 - 17135394
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaaca 170  Q
    |||||||| ||| | ||||||||||||||| |||| ||||||||||||| | |||| |||| ||| ||||||||||| ||   ||| ||  |||  ||||    
T  17135539 aggcacaccgaaccgtgccaggatgttggagcatcatatccaacatcttccagagacgcctaaacacatgttgaaactttggttccaacttaca-gaaca 17135441  T
Q  171 tgaatatttgttttaacaacaatgcagacaatacaaatatccaacag 217  Q
     | |||||||||||| ||||||||||| ||||||||||| |||||||    
T  17135440 aggatatttgttttagcaacaatgcagccaatacaaatacccaacag 17135394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 11 - 151
Target Start/End: Complemental strand, 20627099 - 20626958
Alignment:
Q  11 aagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgta 110  Q
    ||||||||||||||| ||||||||||| |||| |  || | |  | ||  || |||||| | || |||||| || | ||||||||||||||||||| |||    
T  20627099 aagataaggaaatattgtttccttaaacaataaagggcgtacatacaagtaggcatgaacccagacacactaaaccgtgccaggatgttggaacattgta 20627000  T
Q  111 tccaacatcttacggagatgcctgaac-catgttgaaacatt 151  Q
    ||||| ||||||| ||||||||| ||| ||||||| ||||||    
T  20626999 tccaatatcttacagagatgcctaaacacatgttggaacatt 20626958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 24196290 - 24196434
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacat 171  Q
    |||||||||||| | ||||||||||||| | ||||| |||||||||||| | |||| |||| ||| ||||||||||| ||   ||| ||     |||||     
T  24196290 aggcacactgaaccgtgccaggatgttgaagcatcgcatccaacatcttccagagacgcctaaacacatgttgaaactttggttccaacttagaaaacaa 24196389  T
Q  172 gaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    | |||||||||||  ||||||||||| ||||||||||| ||||||    
T  24196390 ggatatttgtttttgcaacaatgcagccaatacaaatacccaaca 24196434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 214494 - 214443
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||||| ||||||||| | ||||| ||||||||||||||||||||||||||    
T  214494 aaacaagacacactgaaccgtgccaagatgttggaacatcgtatccaacatc 214443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 218
Target Start/End: Original strand, 296248 - 296307
Alignment:
Q  159 acaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaacagt 218  Q
    |||||||||||| | |||||||||||| ||||||||||  ||||||||||| ||||||||    
T  296248 acaacacaaacaaggatatttgttttagcaacaatgcaaccaatacaaatacccaacagt 296307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 18477854 - 18477904
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacat 118  Q
    ||||| ||||||||||| | ||||| |||||||||||||||||||||||||    
T  18477854 aaacagggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 18477904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 162 - 216
Target Start/End: Original strand, 28052189 - 28052243
Alignment:
Q  162 acacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||||||||| | |||||||||||||||| ||||||| ||||||||||| ||||||    
T  28052189 acacaaacaaggatatttgttttaacaataatgcagccaatacaaatacccaaca 28052243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 76 - 133
Target Start/End: Complemental strand, 18482764 - 18482707
Alignment:
Q  76 cacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcct 133  Q
    ||||||||| | || |||||||||| |||||||||||||||||||||| |||| ||||    
T  18482764 cacactgaaccgtgtcaggatgttgaaacatcgtatccaacatcttacagagacgcct 18482707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 118
Target Start/End: Original strand, 8225849 - 8225893
Alignment:
Q  74 ggcacactgaatcttgccaggatgttggaacatcgtatccaacat 118  Q
    ||||||||||| | ||||| |||||||||||||||||||||||||    
T  8225849 ggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 8225893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 174 - 218
Target Start/End: Complemental strand, 23953850 - 23953806
Alignment:
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaacagt 218  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||||    
T  23953850 atatttgttttagcaacaatgcagccaatacaaatacccaacagt 23953806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 25020156 - 25020207
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    |||||||||||||| || | || || ||||||||||||||||||||||||||    
T  25020156 aaacaaggcacactaaaccgtggcaagatgttggaacatcgtatccaacatc 25020207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 7028363 - 7028321
Alignment:
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||    
T  7028363 atatttgttttagcaacaatgcagccaatacaaatacccaaca 7028321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Complemental strand, 15572298 - 15572256
Alignment:
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||    
T  15572298 atatttgttttagcaacaatgcagccaatacaaatacccaaca 15572256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 209
Target Start/End: Complemental strand, 21253349 - 21253300
Alignment:
Q  159 acaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaata 209  Q
    |||||||||||||| |||||||||||| ||| ||||||| |||||||||||    
T  21253349 acaacacaaacatggatatttgttttagcaataatgcag-caatacaaata 21253300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 123
Target Start/End: Complemental strand, 15674231 - 15674182
Alignment:
Q  74 ggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttac 123  Q
    |||||||||||   ||||| |||||||| |||||||||||||||||||||    
T  15674231 ggcacactgaactgtgccaagatgttgggacatcgtatccaacatcttac 15674182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 78; Significance: 2e-36; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 1 - 218
Target Start/End: Complemental strand, 15699802 - 15699585
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  |||||||| | |||||||||||||| ||||||||  ||  | | |  ||||  || || ||| |||||||||||   |||||||||||||    
T  15699802 cttggtcaataagataagaatatatggtttccttatataatatatggcgcgtgtactaacatgcaagatacatggcacactgaactgtgccaggatgttg 15699703  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagaca 200  Q
    |||||||| ||||||||||||| ||| |||| |||||||||||| |||||| ||||| |||||||||||| | ||||||||||||  |||||||||| ||    
T  15699702 gaacatcggatccaacatcttatggacatgcttgaaccatgttggaacattgcatccaacaacacaaacaaggatatttgttttagtaacaatgcagcca 15699603  T
Q  201 atacaaatatccaacagt 218  Q
    ||||||||| | ||||||    
T  15699602 atacaaataccaaacagt 15699585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 216
Target Start/End: Complemental strand, 19183149 - 19182933
Alignment:
Q  2 ttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaa-caag-gcacactgaatcttgccaggatgtt 99  Q
    |||||||  |||||||||||||||||||||||||||||||| |  ||  | | | ||| || ||||||  || | |||||||||| | |||||||||||     
T  19183149 ttggtcaagaagataaggaaatatggtttccttaaataataaagagcgcgtgtacaaataggcatgaactcatgcgcacactgaaccgtgccaggatgtc 19183050  T
Q  100 ggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagac 199  Q
     ||||||||||||||||||||||| ||||||||| || ||||||| ||||||  |||| |||||||||  | | |||||||||||| ||| |||| || |    
T  19183049 agaacatcgtatccaacatcttacagagatgcctaaaacatgttggaacattgtatccaacaacacaagtaaggatatttgttttagcaataatgtagcc 19182950  T
Q  200 aatacaaatatccaaca 216  Q
    |||||||||| ||||||    
T  19182949 aatacaaatacccaaca 19182933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 10724977 - 10725106
Alignment:
Q  88 tgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatgaatatttgttttaa 186  Q
    |||||||||||||||||||||||||||||||||||| |||||||||  ||  |||||| ||||||   ||| |||||||||||| | ||||||||||||     
T  10724977 tgccaggatgttggaacatcgtatccaacatcttacagagatgcctacacatatgttggaacattggttccaacaacacaaacaaggatatttgttttag 10725076  T
Q  187 caacaatgcagacaatacaaatatccaaca 216  Q
    ||| ||||||| ||||||||||| ||||||    
T  10725077 caataatgcagccaatacaaatacccaaca 10725106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 10938746 - 10938875
Alignment:
Q  88 tgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatgaatatttgttttaa 186  Q
    |||||||||||||||||||||||||||||||||||| |||||||||  ||  |||||| ||||||   ||| |||||||||||| | ||||||||||||     
T  10938746 tgccaggatgttggaacatcgtatccaacatcttacagagatgcctacacatatgttggaacattggttccaacaacacaaacaaggatatttgttttag 10938845  T
Q  187 caacaatgcagacaatacaaatatccaaca 216  Q
    ||| ||||||| ||||||||||| ||||||    
T  10938846 caataatgcagccaatacaaatacccaaca 10938875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 101 - 216
Target Start/End: Complemental strand, 15161869 - 15161753
Alignment:
Q  101 gaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagac 199  Q
    ||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||   ||| |||||||||||| | |||||||||||||||| ||||||| |    
T  15161869 gaacatcgtatccaacatcttacagagatgcctaaacacatgttggaacattggttccaacaacacaaacaaggatatttgttttaacaataatgcagcc 15161770  T
Q  200 aatacaaatatccaaca 216  Q
    |||||||||| ||||||    
T  15161769 aatacaaatacccaaca 15161753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 64 - 204
Target Start/End: Original strand, 9069700 - 9069840
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaac 163  Q
    |||||||  |||||||||||| | | |||||||||||||||||||||||||||||||||| || |||||  || ||||||| ||  ||  |||| ||| |    
T  9069700 catgaaatcaggcacactgaaccgttccaggatgttggaacatcgtatccaacatcttacagaaatgccgaaaacatgttggaaacttgtatccaacatc 9069799  T
Q  164 acaaacatgaatatttgttttaacaacaatgcagacaatac 204  Q
    |||||||||  ||||||||||| |||||||| || ||||||    
T  9069800 acaaacatgggtatttgttttagcaacaatgaagtcaatac 9069840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 88 - 216
Target Start/End: Original strand, 15623216 - 15623344
Alignment:
Q  88 tgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaac 187  Q
    |||||||||||||||||||||||||||||||||||| || |||||| || ||||||| | |||   |||| || ||||||| ||| |||||| ||||  |    
T  15623216 tgccaggatgttggaacatcgtatccaacatcttacagaaatgcctaaaacatgttggatcatagtatccaactacacaaagatggatatttattttggc 15623315  T
Q  188 aacaatgcagacaatacaaatatccaaca 216  Q
    || ||||||  ||||||||||| ||||||    
T  15623316 aataatgcaaccaatacaaatacccaaca 15623344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 33744164 - 33744282
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||| ||||||| |||||||||||||||||||||||| || ||| ||| | |   || |||||| | || || |||||| | ||| |||||||||    
T  33744164 cttggtcagtaagataaagaaatatggtttccttaaataatacaaggcacgcgtaaatgtaggcatgaacccagacagactgaaccgtgctaggatgttg 33744263  T
Q  101 gaacatcgtatccaacatc 119  Q
    ||||||| |||||||||||    
T  33744264 gaacatcttatccaacatc 33744282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 49975008 - 49975058
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacat 118  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  49975008 aaacagggcacactgaatcgtgccaggatgttggaacatcgtatccaacat 49975058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 18601054 - 18600910
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaaca 170  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||||| |  ||| |||| ||| ||||||||||||||   ||| ||  |||  ||||    
T  18601054 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacatcttccacagacgcctaaacacatgttgaaacattggttccaacttaca-gaaca 18600956  T
Q  171 tgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
     | |||||||||||| ||||||| ||| ||||||||||| ||||||    
T  18600955 aggatatttgttttagcaacaatacagccaatacaaatacccaaca 18600910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 216
Target Start/End: Original strand, 16384597 - 16384799
Alignment:
Q  15 taaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatcca 114  Q
    ||||||||||| ||||||||||| |||| |  ||  ||| | |||||| |  ||| | ||||||||||||   || |||||||||||| |||||||||||    
T  16384597 taaggaaatattgtttccttaaacaataaagggcgcgcgtacaaacaggcgagaacccaggcacactgaactgtgtcaggatgttggagcatcgtatcca 16384696  T
Q  115 acatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatcc 212  Q
    ||||||| | |||| |||| ||| ||||||| ||||||   | | ||  |||| |||| | |||||||||||| ||||||||||| ||||||||||| ||    
T  16384697 acatcttccagagacgcctaaacacatgttggaacattggtttcaacttacac-aacaaggatatttgttttagcaacaatgcagccaatacaaataccc 16384795  T
Q  213 aaca 216  Q
    ||||    
T  16384796 aaca 16384799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 33746612 - 33746731
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacac-tgaatcttgccaggatgtt 99  Q
    ||||||||| |||||||||||||||||||||||||||||||| || ||  ||  | ||  || |||||| | || ||||| |||| |  |||||||||||    
T  33746612 cttggtcagtaagataaggaaatatggtttccttaaataatacaaggcgcgcatacaagtaggcatgaacccagacacacttgaaccgcgccaggatgtt 33746711  T
Q  100 ggaacatcgtatccaacatc 119  Q
     |||||||||||||||||||    
T  33746712 agaacatcgtatccaacatc 33746731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 10718235 - 10718285
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacat 118  Q
    ||||| ||||||||||| | |||||||||||||||||||||||||||||||    
T  10718235 aaacagggcacactgaaccgtgccaggatgttggaacatcgtatccaacat 10718285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 10932004 - 10932054
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacat 118  Q
    ||||| ||||||||||| | |||||||||||||||||||||||||||||||    
T  10932004 aaacagggcacactgaaccgtgccaggatgttggaacatcgtatccaacat 10932054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 10683007 - 10683057
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacat 118  Q
    ||||| ||||||||||| | ||||| |||||||||||||||||||||||||    
T  10683007 aaacagggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 10683057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 10896647 - 10896697
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacat 118  Q
    ||||| ||||||||||| | ||||| |||||||||||||||||||||||||    
T  10896647 aaacagggcacactgaaccgtgccaagatgttggaacatcgtatccaacat 10896697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 33744496 - 33744574
Alignment:
Q  138 catgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||||||| ||||| | |||| ||| |||||||||  |||||||||||| ||| ||||||| ||||||||||| ||||||    
T  33744496 catgttggaacataatatccaacatcacaaacatatatatttgttttagcaataatgcagccaatacaaatacccaaca 33744574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 68 - 121
Target Start/End: Original strand, 41786193 - 41786246
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatctt 121  Q
    ||||||| || |||||| | |||||||||||||||||||| |||||||||||||    
T  41786193 aaacaagacatactgaaccgtgccaggatgttggaacatcatatccaacatctt 41786246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 163 - 216
Target Start/End: Original strand, 41786278 - 41786331
Alignment:
Q  163 cacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||| ||||| |||||||||||| ||| ||||||| ||||||||||||||||||    
T  41786278 cacatacatggatatttgttttagcaataatgcagccaatacaaatatccaaca 41786331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 10723323 - 10723383
Alignment:
Q  154 atcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaa 214  Q
    |||| ||| |||||||||| |||||||||||| ||| |||| || ||||||||||||||||    
T  10723323 atccaacatcacaaacatggatatttgttttagcaataatgtagccaatacaaatatccaa 10723383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 154 - 214
Target Start/End: Original strand, 10937092 - 10937152
Alignment:
Q  154 atcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaa 214  Q
    |||| ||| |||||||||| |||||||||||| ||| |||| || ||||||||||||||||    
T  10937092 atccaacatcacaaacatggatatttgttttagcaataatgtagccaatacaaatatccaa 10937152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 10197647 - 10197596
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||| ||||||||||| | ||||| |||||||||||||| |||||||||||    
T  10197647 aaacatggcacactgaaccgtgccaagatgttggaacatcatatccaacatc 10197596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 10683272 - 10683327
Alignment:
Q  154 atcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaata 209  Q
    |||| ||| |||||||||| |||||||||||| ||| ||||||| |||||||||||    
T  10683272 atccaacatcacaaacatggatatttgttttagcaataatgcagccaatacaaata 10683327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 154 - 209
Target Start/End: Original strand, 10896912 - 10896967
Alignment:
Q  154 atcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaata 209  Q
    |||| ||| |||||||||| |||||||||||| ||| ||||||| |||||||||||    
T  10896912 atccaacatcacaaacatggatatttgttttagcaataatgcagccaatacaaata 10896967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 10723047 - 10723097
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacat 118  Q
    ||||| || |||||||| | ||||| |||||||||||||||||||||||||    
T  10723047 aaacagggaacactgaaccgtgccaagatgttggaacatcgtatccaacat 10723097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Original strand, 10936816 - 10936866
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacat 118  Q
    ||||| || |||||||| | ||||| |||||||||||||||||||||||||    
T  10936816 aaacagggaacactgaaccgtgccaagatgttggaacatcgtatccaacat 10936866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 11905837 - 11905878
Alignment:
Q  79 actgaatcttgccaggatgttggaacatcgtatccaacatct 120  Q
    |||||| | |||||||||||||||||||||| ||||||||||    
T  11905837 actgaaccatgccaggatgttggaacatcgtgtccaacatct 11905878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 23399590 - 23399446
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaaca 170  Q
    ||||||||| || | ||||||||||||| | ||||| |||||||||||| | |||| |||| ||| ||||||||||| ||   ||| ||  |||  ||||    
T  23399590 aggcacactaaaccgtgccaggatgttgaagcatcgcatccaacatcttccagagacgcctaaacacatgttgaaactttggttccaacttaca-gaaca 23399492  T
Q  171 tgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
     | |||||| ||||| ||||||||||| ||||||||||| ||||||    
T  23399491 aggatatttattttagcaacaatgcagccaatacaaatacccaaca 23399446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 121
Target Start/End: Original strand, 25117636 - 25117669
Alignment:
Q  88 tgccaggatgttggaacatcgtatccaacatctt 121  Q
    ||||||||||||||| ||||||||||||||||||    
T  25117636 tgccaggatgttggagcatcgtatccaacatctt 25117669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 120
Target Start/End: Original strand, 32862408 - 32862456
Alignment:
Q  72 aaggcacactgaatcttgccaggatgttggaacatcgtatccaacatct 120  Q
    ||||||||||||| | |  ||||||||||||||||| ||||||||||||    
T  32862408 aaggcacactgaaccgtatcaggatgttggaacatcatatccaacatct 32862456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 72; Significance: 7e-33; HSPs: 24)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 25349623 - 25349480
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatg 172  Q
    |||||||||||| | |||||||||||||||| ||| |||||||||||||||  | |||||| || ||||||| ||||||  |||| ||||||||||||||    
T  25349623 aggcacactgaaccatgccaggatgttggaatatcatatccaacatcttacataaatgcctaaaacatgttggaacattgtatccaacaacacaaacatg 25349524  T
Q  173 aatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
     |||||||||||||||| ||||||| ||||| ||||| ||||||    
T  25349523 gatatttgttttaacaataatgcagtcaatataaatagccaaca 25349480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 23477401 - 23477194
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  ||||||||||||| ||||||||||||||||||| | ||  ||| | ||| || |||  ||| ||||||| |||| | ||||| |||||||    
T  23477401 cttggtcaataagataaggaaatgtggtttccttaaataatattaggcg-gcgtacaaataggcatacaaccaggcacattgaaccgtgccaagatgttg 23477303  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagaca 200  Q
    |||||| |||| ||||||  |||  ||||||||||| ||||||| |||||   |||| |||||||| | |||||||||||||||| ||||||||||| ||    
T  23477302 gaacattgtattcaacattatacaaagatgcctgaaacatgttggaacatagtatccaacaacacatatatgaatatttgttttagcaacaatgcagcca 23477203  T
Q  201 atacaaata 209  Q
    |||||||||    
T  23477202 atacaaata 23477194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 1626266 - 1626474
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    |||||||||||||||| || ||  ||||||||||||| || |||| ||  ||| | ||  || |||||||| ||||||||||||   | |||||||||||    
T  1626266 cttggtcagcaagatatgggaaagtggtttccttaaaaaagataaagcgcgcgtacaagtaggcatgaaaccaggcacactgaactgttccaggatgttg 1626365  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagaca 200  Q
    ||||||| ||||||||||||||| || |||| | || ||||||| || |||  |||| |||||| ||||| | |||||||||||| ||| ||||||| ||    
T  1626366 gaacatcatatccaacatcttacagaaatgcataaaacatgttggaatattgtatccaacaacataaacaaggatatttgttttagcaataatgcagcca 1626465  T
Q  201 atacaaata 209  Q
    |||||||||    
T  1626466 atacaaata 1626474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 60 - 216
Target Start/End: Complemental strand, 10339566 - 10339410
Alignment:
Q  60 cagacatgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatccta 159  Q
    ||||||| ||||||||||||||||| | || || |||||||||||||||||||||||||||||| || |||||| || ||||||| |||||   |||| |    
T  10339566 cagacataaaacaaggcacactgaaccgtgtcaagatgttggaacatcgtatccaacatcttacagaaatgcctaaaacatgttggaacatagtatccaa 10339467  T
Q  160 caacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    || | ||| |||| |||||| ||||| ||| ||||||| ||||||||||| ||||||    
T  10339466 catcgcaatcatggatatttattttagcaataatgcagccaatacaaatacccaaca 10339410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 151
Target Start/End: Complemental strand, 17850893 - 17850743
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  ||||||||||||||||||||||||||||||||||| ||   |||| ||||  |||||||  ||||||||||||| | ||  |||||||||    
T  17850893 cttggtcaataagataaggaaatatggtttccttaaataatataaagcgcacgcacaaactaacatgaactaaggcacactgaaccgtgttaggatgttg 17850794  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacatt 151  Q
    |||||| |||||||| |||||||  ||||| ||||| ||||||| ||||||    
T  17850793 gaacattgtatccaaaatcttacaaagatgactgaaacatgttggaacatt 17850743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 88 - 216
Target Start/End: Complemental strand, 11667282 - 11667153
Alignment:
Q  88 tgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatgaatatttgttttaa 186  Q
    ||||| |||||||||||||||||||||||||||||| |||||| || ||| ||||||| ||||||   ||| |||||||||||| | |||||||||| |     
T  11667282 tgccatgatgttggaacatcgtatccaacatcttacagagatgtctaaacacatgttggaacattggttccaacaacacaaacaaggatatttgtttaat 11667183  T
Q  187 caacaatgcagacaatacaaatatccaaca 216  Q
    |||||||| || ||||||||||| ||||||    
T  11667182 caacaatggagtcaatacaaatacccaaca 11667153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 20200483 - 20200339
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaaca 170  Q
    ||||| |||||| | |||||||||||||||||||||||||||||||||||| ||||||||| ||| ||||||| ||||||   ||| ||  | || ||||    
T  20200483 aggcatactgaaccgtgccaggatgttggaacatcgtatccaacatcttacagagatgcctaaacacatgttggaacattggttccaacttatac-aaca 20200385  T
Q  171 tgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
     | |||||||||||| ||||||||||| ||||||||||| ||||||    
T  20200384 aggatatttgttttagcaacaatgcagccaatacaaatacccaaca 20200339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 76 - 216
Target Start/End: Original strand, 24986751 - 24986892
Alignment:
Q  76 cacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatgaa 174  Q
    ||||||||| | |||||| |||||||||||| |||||||||||||||| ||||||||| ||| ||||||| ||||||   ||| ||||||||  || | |    
T  24986751 cacactgaaccgtgccagaatgttggaacattgtatccaacatcttacagagatgcctaaacacatgttggaacattggttccaacaacacagtcaagga 24986850  T
Q  175 tatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||||| ||||| ||| ||||||| ||||||||||| ||||||    
T  24986851 tatttattttagcaataatgcagtcaatacaaatacccaaca 24986892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 73 - 216
Target Start/End: Original strand, 4246803 - 4246949
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgt--atccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaac 169  Q
    ||||||||| || | |||||||||||||||  |||||  |||||||||||||| |||| | || ||| ||||||||||||||   ||| |||||||| ||    
T  4246803 aggcacactaaaccatgccaggatgttggaggatcgtgtatccaacatcttacagagacgtctaaacacatgttgaaacattggttccaacaacacatac 4246902  T
Q  170 atgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    | | |||||||||||| ||||||||||| ||||||||||| ||||||    
T  4246903 aaggatatttgttttagcaacaatgcagccaatacaaatacccaaca 4246949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 73 - 217
Target Start/End: Complemental strand, 20840658 - 20840513
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaaca 170  Q
    ||||||||||||   || ||||||||||||||||||||||||||||||||| ||||||||| |||  |||||| ||||||   ||| ||  |||| | ||    
T  20840658 aggcacactgaactgtgtcaggatgttggaacatcgtatccaacatcttacagagatgcctaaacatatgttggaacattggttccaacttacac-atca 20840560  T
Q  171 tgaatatttgttttaacaacaatgcagacaatacaaatatccaacag 217  Q
     | |||||||||||| ||||||||||| ||||||||||| |||||||    
T  20840559 aggatatttgttttagcaacaatgcagccaatacaaatacccaacag 20840513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 12753753 - 12753871
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  |||||||||||||||||||||||||||||||  || |   ||| | ||  || |  ||| | |||||||||||| | |||||||||||||    
T  12753753 cttggtcaataagataaggaaatatggtttccttaaataattcaaggtgcgcgtacaagtaggctcgaacccaggcacactgaaccgtgccaggatgttg 12753852  T
Q  101 gaacatcgtatccaacatc 119  Q
    |||||||||||||||||||    
T  12753853 gaacatcgtatccaacatc 12753871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 17838292 - 17838230
Alignment:
Q  154 atcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||    
T  17838292 atccaacaacacaaacatgaatatttgttttagcaataatgcagccaatacaaatacccaaca 17838230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 26971792 - 26971716
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaac 148  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||||| | |||| |||| ||| |||||||||||    
T  26971792 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacatcttccagagacgcctaaacacatgttgaaac 26971716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 15803527 - 15803465
Alignment:
Q  154 atcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||| ||||||||||||||||||||||||||| ||| ||||||| |||| |||||| ||||||    
T  15803527 atccaacaacacaaacatgaatatttgttttagcaataatgcagccaatgcaaatacccaaca 15803465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 68 - 209
Target Start/End: Complemental strand, 41330781 - 41330640
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaa 167  Q
    ||||||||||||||||| | ||  ||||||||||||||||  |||||| |||||  | | |||||| || || |||| |||||   |||  ||| || ||    
T  41330781 aaacaaggcacactgaaccgtgataggatgttggaacatcacatccaaaatcttgtgaaaatgcctaaaacacgttggaacatggtatcgaacatcaaaa 41330682  T
Q  168 acatgaatatttgttttaacaacaatgcagacaatacaaata 209  Q
     |||| |||||||||||| ||||||||||| |||||||||||    
T  41330681 tcatggatatttgttttagcaacaatgcagtcaatacaaata 41330640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 123
Target Start/End: Complemental strand, 22891195 - 22891145
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttac 123  Q
    |||||||||||| | ||||||||||||||||||| |||||||||| |||||    
T  22891195 aggcacactgaaccgtgccaggatgttggaacatagtatccaacaacttac 22891145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 9452171 - 9452247
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaac 148  Q
    ||||||||||||   |||||| |||||||| |||||||||||||||||||  |||| |||| ||| |||||||||||    
T  9452171 aggcacactgaactgtgccagaatgttggagcatcgtatccaacatcttatagagacgcctaaacacatgttgaaac 9452247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 13150057 - 13150133
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaac 148  Q
    |||||||||||| | ||||||||||||| | ||||| |||||||||||| | |||| |||| ||| |||||||||||    
T  13150057 aggcacactgaaccgtgccaggatgttgaagcatcgcatccaacatcttccagagacgcctaaacacatgttgaaac 13150133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 42
Target Start/End: Complemental strand, 15803602 - 15803562
Alignment:
Q  2 ttggtcagcaagataaggaaatatggtttccttaaataata 42  Q
    |||||||  ||||||||||||||||||||||||||||||||    
T  15803602 ttggtcaataagataaggaaatatggtttccttaaataata 15803562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 8282680 - 8282731
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||||||| |||||||   || |||||||||||||||||||||||||||||    
T  8282680 aaacaaggctcactgaactgtgtcaggatgttggaacatcgtatccaacatc 8282731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 51471490 - 51471439
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||| ||||||||||| | ||||||||||||||||| || |||||||||||    
T  51471490 aaacagggcacactgaaccgtgccaggatgttggaacttcatatccaacatc 51471439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 216
Target Start/End: Original strand, 12759297 - 12759375
Alignment:
Q  138 catgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||||||| ||||| | |||| ||| |||||||||| |||||||||||| ||| ||||||   |||||||||| ||||||    
T  12759297 catgttggaacataatatccaacatcacaaacatggatatttgttttagcaataatgcaactaatacaaataaccaaca 12759375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 13166261 - 13166303
Alignment:
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||    
T  13166261 atatttgttttagcaacaatgcagccaatacaaatacccaaca 13166303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 68 - 118
Target Start/End: Complemental strand, 22348022 - 22347972
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacat 118  Q
    ||||| ||||||||||| | ||||| |||||| ||||||||||||||||||    
T  22348022 aaacagggcacactgaaccgtgccaagatgttagaacatcgtatccaacat 22347972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0213 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0213
Description:

Target: scaffold0213; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 8045 - 7829
Alignment:
Q  1 cttggtcagcaagataaggaaatatggtttccttaaataatataacgcatgcgcataaacagacatgaaacaaggcacactgaatcttgccaggatgttg 100  Q
    ||||||||  ||||||||||||||| ||||||||||| |||| |  ||  ||| | ||| || |||||| | ||||||||||||   |||| |||||||     
T  8045 cttggtcaataagataaggaaatattgtttccttaaacaataaagagcgggcgtacaaataggcatgaacccaggcacactgaacagtgccgggatgttc 7946  T
Q  101 gaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagac 199  Q
    ||||||||||| ||||||||||  ||||||| | ||| ||||||| ||||||   ||| |||||||||| | | |||||||||||| ||| ||||||| |    
T  7945 gaacatcgtatgcaacatcttatagagatgcttaaacacatgttggaacattggttccaacaacacaaataaggatatttgttttagcaataatgcagcc 7846  T
Q  200 aatacaaatatccaaca 216  Q
    |||||||||| ||||||    
T  7845 aatacaaatacccaaca 7829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226 (Bit Score: 57; Significance: 6e-24; HSPs: 3)
Name: scaffold0226
Description:

Target: scaffold0226; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 17519 - 17375
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacat 171  Q
    |||||||||||| | ||  |||||||||||||||| |||| |||||||||| ||||| ||| ||| ||||||| ||||||   ||| ||||||||||||     
T  17519 aggcacactgaaccgtggtaggatgttggaacatcatatctaacatcttacagagatacctaaacacatgttggaacattggttccaacaacacaaacaa 17420  T
Q  172 gaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    | |||||||||||| ||| ||||||| ||||||||||| ||||||    
T  17419 ggatatttgttttagcaataatgcagtcaatacaaatacccaaca 17375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 26913 - 26769
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacat 171  Q
    |||||||||||| | ||  |||||||||||||||| |||| |||||||||| ||||| ||| ||| ||||||| ||||||   ||| ||||||||||||     
T  26913 aggcacactgaaccgtggtaggatgttggaacatcatatctaacatcttacagagatacctaaacacatgttggaacattggttccaacaacacaaacaa 26814  T
Q  172 gaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    | |||||||||||| ||| ||||||| ||||||||||| ||||||    
T  26813 ggatatttgttttagcaataatgcagtcaatacaaatacccaaca 26769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0226; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 76 - 216
Target Start/End: Complemental strand, 6931 - 6789
Alignment:
Q  76 cacactgaatcttgcca-ggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctacaacacaaacatga 173  Q
    ||||||||| | ||||| ||||||||||||||| ||||||| |||||||  ||||| || ||| ||||||| ||||||   ||| |||||||||||| |     
T  6931 cacactgaaccgtgccaaggatgttggaacatcatatccaaaatcttacaaagatggctaaacacatgttggaacattggttccaacaacacaaacaagg 6832  T
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    ||||||| |||| ||| |||| || ||||||||||| ||||||    
T  6831 atatttgctttagcaataatgtagccaatacaaatacccaaca 6789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 88 - 218
Target Start/End: Original strand, 38085 - 38215
Alignment:
Q  88 tgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaac 187  Q
    ||||||||||||||||||||||||||||||||||||  | |||| |||  |||| || ||||||  |||| | | ||||||| |  |||||||||||| |    
T  38085 tgccaggatgttggaacatcgtatccaacatcttacataaatgcttgagacatgatggaacattgtatccaatatcacaaacttatatatttgttttagc 38184  T
Q  188 aacaatgcagacaatacaaatatccaacagt 218  Q
    || ||||||| ||||||||||| ||||||||    
T  38185 aataatgcagccaatacaaatacccaacagt 38215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0103 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0103
Description:

Target: scaffold0103; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 73 - 216
Target Start/End: Complemental strand, 25072 - 24928
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacattacatcctac-aacacaaaca 170  Q
    |||||||||||| | ||||||||||||||| |||||||||||||||||| | |||| |||| ||| ||||||||||| ||   ||| ||  |||  ||||    
T  25072 aggcacactgaaccgtgccaggatgttggagcatcgtatccaacatcttccagagacgcctaaacacatgttgaaactttggttccaacttaca-gaaca 24974  T
Q  171 tgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
     | |||||||||||| ||||||||||| ||||||||||| ||||||    
T  24973 aggatatttgttttagcaacaatgcagccaatacaaatacccaaca 24928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0185 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0185
Description:

Target: scaffold0185; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 1762 - 1683
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacatt 151  Q
    |||||||||||| | |||||| |||||||||||||||||||||||||||||  ||| |||| ||| ||||||||||||||    
T  1762 aggcacactgaaccgtgccagaatgttggaacatcgtatccaacatcttacaaagacgcctaaacacatgttgaaacatt 1683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0190 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0190
Description:

Target: scaffold0190; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 73 - 131
Target Start/End: Complemental strand, 16015 - 15957
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgc 131  Q
    |||||||| ||| | |||||||||||||||||||||||||||||||||||| |||||||    
T  16015 aggcacaccgaaccgtgccaggatgttggaacatcgtatccaacatcttacagagatgc 15957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 64 - 151
Target Start/End: Complemental strand, 16729 - 16641
Alignment:
Q  64 catgaaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacatt 151  Q
    |||||||  |||||||||||| | || ||||||||| || ||||||||||||||||||||  |||||||| ||| ||||||||||||||    
T  16729 catgaaatcaggcacactgaaccatgtcaggatgttagatcatcgtatccaacatcttacaaagatgcctaaacacatgttgaaacatt 16641  T

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Target: scaffold0129 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0129
Description:

Target: scaffold0129; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 73 - 121
Target Start/End: Original strand, 16270 - 16318
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatctt 121  Q
    |||||||||||| | ||||||||||||||||||||||||||||||||||    
T  16270 aggcacactgaaccgtgccaggatgttggaacatcgtatccaacatctt 16318  T

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Target: scaffold0088 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0088
Description:

Target: scaffold0088; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 37355 - 37434
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaacatt 151  Q
    |||||||||||| | || |||||||||||||||| ||||||||||| |||| |||| |||| ||| ||||||||||||||    
T  37355 aggcacactgaaccgtgtcaggatgttggaacattgtatccaacattttacagagacgcctaaacacatgttgaaacatt 37434  T

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Target: scaffold0008 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 135 - 216
Target Start/End: Original strand, 36568 - 36649
Alignment:
Q  135 aaccatgttgaaacattacatcctacaacacaaacatgaatatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||||| |||||   |||| ||| |||||||||| |||||||||||| ||| ||||||| ||||||||||| ||||||    
T  36568 aaccatgttggaacatattatccaacatcacaaacatggatatttgttttagcaataatgcagccaatacaaatacccaaca 36649  T

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Target: scaffold0520 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0520
Description:

Target: scaffold0520; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 5727 - 5778
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||| ||||||||||| | |||||||||||||||||||| |||||||||||    
T  5727 aaacagggcacactgaaccatgccaggatgttggaacatcatatccaacatc 5778  T

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Target: scaffold0520; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 119
Target Start/End: Original strand, 11982 - 12033
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||| ||||||||||| | |||||||||||||||||||| |||||||||||    
T  11982 aaacagggcacactgaaccatgccaggatgttggaacatcatatccaacatc 12033  T

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Target: scaffold0064 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0064
Description:

Target: scaffold0064; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 119
Target Start/End: Complemental strand, 45367 - 45316
Alignment:
Q  68 aaacaaggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||| ||||||||||| | ||||| ||||||||||||||||||||||||||    
T  45367 aaacagggcacactgaaccatgccaagatgttggaacatcgtatccaacatc 45316  T

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Target: scaffold0059 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0059
Description:

Target: scaffold0059; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 73 - 147
Target Start/End: Complemental strand, 47785 - 47710
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaa 147  Q
    |||||||||||| | |||||||||||||||  ||||||||||||||||| | |||| |||| ||| ||||||||||    
T  47785 aggcacactgaaccgtgccaggatgttggagtatcgtatccaacatcttccagagacgcctaaacacatgttgaaa 47710  T

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Target: scaffold0006 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0006
Description:

Target: scaffold0006; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 88511 - 88561
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttac 123  Q
    |||||||||||| | || |||||||||||||||| ||||||||||||||||    
T  88511 aggcacactgaaccatgtcaggatgttggaacattgtatccaacatcttac 88561  T

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Target: scaffold0453 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0453
Description:

Target: scaffold0453; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Complemental strand, 1395 - 1319
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcctgaac-catgttgaaac 148  Q
    |||||||||||| | ||| ||||||||||| |||| ||||||||||||| | |||| |||| ||| |||||||||||    
T  1395 aggcacactgaaccatgctaggatgttggagcatcatatccaacatcttccagagacgcctaaacacatgttgaaac 1319  T

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Target: scaffold0069 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 73 - 133
Target Start/End: Original strand, 9439 - 9499
Alignment:
Q  73 aggcacactgaatcttgccaggatgttggaacatcgtatccaacatcttacggagatgcct 133  Q
    |||||||||||| | ||||| || |||||||||| |||||||||| ||||| |||||||||    
T  9439 aggcacactgaaccgtgccaagaagttggaacattgtatccaacaccttacagagatgcct 9499  T

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Target: scaffold0359 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0359
Description:

Target: scaffold0359; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 174 - 216
Target Start/End: Original strand, 2756 - 2798
Alignment:
Q  174 atatttgttttaacaacaatgcagacaatacaaatatccaaca 216  Q
    |||||||||||| ||||||||||| ||||||||||| ||||||    
T  2756 atatttgttttagcaacaatgcagccaatacaaatacccaaca 2798  T

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Target: scaffold0480 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0480
Description:

Target: scaffold0480; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Original strand, 11946 - 11991
Alignment:
Q  74 ggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    ||||||||||| | ||||||||||||| |||||||| |||||||||    
T  11946 ggcacactgaaccgtgccaggatgttgaaacatcgtgtccaacatc 11991  T

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Target: scaffold0034 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 74 - 119
Target Start/End: Complemental strand, 50303 - 50258
Alignment:
Q  74 ggcacactgaatcttgccaggatgttggaacatcgtatccaacatc 119  Q
    |||||||||||   ||| ||||||||||||||||||||||||||||    
T  50303 ggcacactgaactgtgctaggatgttggaacatcgtatccaacatc 50258  T

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