View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12454_low_4 (Length: 727)
Name: NF12454_low_4
Description: NF12454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12454_low_4 |
 | |
|
| [»] scaffold0002 (5 HSPs) |
| | |
|
| [»] scaffold0702 (1 HSPs) |
| | |
|
| [»] scaffold1779 (1 HSPs) |
| | |
|
| [»] scaffold0008 (1 HSPs) |
| | |
|
| [»] scaffold0625 (1 HSPs) |
| | |
|
| [»] scaffold0330 (2 HSPs) |
| | |
|
| [»] scaffold0477 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 528; Significance: 0; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 528; E-Value: 0
Query Start/End: Original strand, 135 - 670
Target Start/End: Complemental strand, 18343685 - 18343150
Alignment:
| Q |
135 |
ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca |
234 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343685 |
ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca |
18343586 |
T |
|
| Q |
235 |
actataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctct |
334 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343585 |
actataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctct |
18343486 |
T |
|
| Q |
335 |
tcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgc |
434 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343485 |
tcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgc |
18343386 |
T |
|
| Q |
435 |
atatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggca |
534 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343385 |
atatttccagacaaacctgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggca |
18343286 |
T |
|
| Q |
535 |
aaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttc |
634 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343285 |
aaatactttatgaaatgggaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttc |
18343186 |
T |
|
| Q |
635 |
agaataatcattagaacgaaataggtctttagtatg |
670 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343185 |
agaataatcattagaacgaaataggtctttagtatg |
18343150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 123; E-Value: 8e-63
Query Start/End: Original strand, 1 - 127
Target Start/End: Complemental strand, 18343845 - 18343719
Alignment:
| Q |
1 |
caacattatctagttagatatggatagcaaaaaaggtctataagaatccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18343845 |
caacattatctagttagatatggatagcaaaaatggtctataagaatccatatttggttctatatcaaagcaagatatacaaatttctaatatgtcaaaa |
18343746 |
T |
|
| Q |
101 |
aatcccgcgattgtattctattttaaa |
127 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
18343745 |
aatcccgcgattgtattctattttaaa |
18343719 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 506506 - 506555
Alignment:
| Q |
166 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
506506 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
506555 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 18042124 - 18042075
Alignment:
| Q |
166 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18042124 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
18042075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 142 - 297
Target Start/End: Original strand, 50593542 - 50593696
Alignment:
| Q |
142 |
tatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataa |
241 |
Q |
| |
|
||||||| |||||||||| | ||| ||||||| |||| |||||||| | || | ||| |||||||||||| ||||||| ||| ||||| |||||||| |
|
|
| T |
50593542 |
tattttttgatcgatttatgcacgatgagccgtgtgagacgaaaatctaacgtgcagtt-tgtaatagagatagaattgataaacaaccactaactataa |
50593640 |
T |
|
| Q |
242 |
ccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcct |
297 |
Q |
| |
|
|||| |||||||||||| | ||||||||||| ||||| ||| ||| ||||||||| |
|
|
| T |
50593641 |
cccccaaagaaccagatccaataaacaacatcaaggaaaaattaaaagaaaagcct |
50593696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 581 - 627
Target Start/End: Complemental strand, 22101625 - 22101579
Alignment:
| Q |
581 |
ggctatttcaatagcggcatccaaaatgcctatacgaactcaattca |
627 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
22101625 |
ggctatttcaatagcggcatccaaaatgtctatacgaactcaattca |
22101579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 18179734 - 18179696
Alignment:
| Q |
165 |
gaggagccgtatgaggtgaaaatctcatgtacggttctg |
203 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
18179734 |
gaggagccgtatgagatgaaaatctcacgtacggttctg |
18179696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 471; Significance: 0; HSPs: 5)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 471; E-Value: 0
Query Start/End: Original strand, 135 - 669
Target Start/End: Original strand, 163684 - 164218
Alignment:
| Q |
135 |
ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatca |
234 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
163684 |
ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataactatca |
163783 |
T |
|
| Q |
235 |
actataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctct |
334 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| |
|
|
| T |
163784 |
actataaccccaaaagaaccagattccgcaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcgaaaaatatgttct |
163883 |
T |
|
| Q |
335 |
tcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgc |
434 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
163884 |
ttaggcacttgagcccgcttggatcacatctagacaaatagaagtagggcgatgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtatgc |
163983 |
T |
|
| Q |
435 |
atatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggca |
534 |
Q |
| |
|
||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
163984 |
atatttccagacaaacctgttacattaagatctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccgaca |
164083 |
T |
|
| Q |
535 |
aaatactttatgaaatgggaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttc |
634 |
Q |
| |
|
||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
164084 |
aaatactttatgaaatgggcggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctataagaactcaattcattctttc |
164183 |
T |
|
| Q |
635 |
agaataatcattagaacgaaataggtctttagtat |
669 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |
|
|
| T |
164184 |
agaataatcattagatcgaaataggtctttagtat |
164218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #2
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 159 - 630
Target Start/End: Complemental strand, 278382 - 277909
Alignment:
| Q |
159 |
attcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaata--accatcaactataaccccaaaagaaccag |
256 |
Q |
| |
|
||||||||||||| | ||||| |||| |||||||| | ||| || | ||||||||||| | ||||| | |||||| |||||||||||||||||||||| |
|
|
| T |
278382 |
attcgcgaggagctggatgagaagaaactctcatgtccagttttggagtagagatggaactaagaaagagaaccatcgactataaccccaaaagaaccag |
278283 |
T |
|
| Q |
257 |
attccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttgg |
356 |
Q |
| |
|
||| || ||||||||| |||||||||||||||||||| ||| ||||| ||| |||| || || | |||||||||||| |||||||| ||||||||| |
|
|
| T |
278282 |
atttcgcaaacaacatagaggaagaatgaaaggaaaatccttccgaggcaatcgtatttgttttggtagatatgctcttcaagcacttgaacccgcttgg |
278183 |
T |
|
| Q |
357 |
atcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgtta |
456 |
Q |
| |
|
||||| | ||||| ||||||||||| ||| | ||||| ||||| ||| || || ||||| |||||||||||||| |||||||| |||||||| |||| |
|
|
| T |
278182 |
atcacggcgagacagatagaagcaggacgaagagcaataacacgatatgcacgtcgtggtggaaaaatatgggtacgtatatttcccgacaaaccggtta |
278083 |
T |
|
| Q |
457 |
cagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggagg |
556 |
Q |
| |
|
|| ||||||| || ||||| |||||||| |||||||| || || ||||||||||||||||| || |||||||| || ||||||||||||||||| || |
|
|
| T |
278082 |
cactaagacccacggaaacacgtatgggctcgggaaaggggtcccccgaatattgggtagccgttgttaaaccaggtcgtatactttatgaaatgggggg |
277983 |
T |
|
| Q |
557 |
cgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattc |
630 |
Q |
| |
|
|| | |||| | |||||||| ||||| || |||||||| |||||||| ||||||| |||||| |||| |
|
|
| T |
277982 |
agtatctgaaactgtagctagagcagctatctccatagcggccagtaaaatgcccatacgaagtcaatttattc |
277909 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 163498 - 163589
Alignment:
| Q |
1 |
caacattatctagttagatatggatagcaaaaaaggtctataagaatccatatttggttctatatcaaagcaagatatacaaatttctaata |
92 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |||||| ||||||||||||||||||||||||| |
|
|
| T |
163498 |
caacattatctagttagatatggatagcaaaaatggtctataaaaatccatatttggttttatatccaagcaagatatacaaatttctaata |
163589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 164 - 206
Target Start/End: Original strand, 190645 - 190687
Alignment:
| Q |
164 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa |
206 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
190645 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgtaa |
190687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 127
Target Start/End: Original strand, 163610 - 163645
Alignment:
| Q |
92 |
atgtcaaaaaatcccgcgattgtattctattttaaa |
127 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| |
|
|
| T |
163610 |
atgtcaaaaaatcccgcgattctattctattttaaa |
163645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0702 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: scaffold0702
Description:
Target: scaffold0702; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 227 - 556
Target Start/End: Original strand, 6873 - 7202
Alignment:
| Q |
227 |
aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6873 |
aaccatcaactataaccccaaaagaaccagatttcgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
6972 |
T |
|
| Q |
327 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatat |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
6973 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcaaggcgacgggcaatatcacaaaatgtttgccgaggtgggaaaatat |
7072 |
T |
|
| Q |
427 |
gggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaa |
526 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7073 |
gggtacgtatatttccagacaaacctgttacagtaatacctaccgaaacgcgtatgggttcaggaaaagaatctcccgaatattgggtagctgtcgttaa |
7172 |
T |
|
| Q |
527 |
acccggcaaaatactttatgaaatgggagg |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
7173 |
acccggcaaaatactttatgaaatgggagg |
7202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 227 - 556
Target Start/End: Original strand, 35194958 - 35195287
Alignment:
| Q |
227 |
aaccatcaactataaccccaaaagaaccagattccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35194958 |
aaccatcaactataaccccaaaagaaccagatttcgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaa |
35195057 |
T |
|
| Q |
327 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatat |
426 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| ||||||| |||||||||||||||||| |
|
|
| T |
35195058 |
tatgctcttcaggcacttgagcccgcttggatcacatctagacaaatagaagcaaggcgacgggcaatatcacaaaatgtttgccgaggtgggaaaatat |
35195157 |
T |
|
| Q |
427 |
gggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaa |
526 |
Q |
| |
|
||||||| ||||||||||||||||| |||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35195158 |
gggtacgtatatttccagacaaacctgttacagtaatacctaccgaaacgcgtatgggttcaggaaaagaatctcccgaatattgggtagctgtcgttaa |
35195257 |
T |
|
| Q |
527 |
acccggcaaaatactttatgaaatgggagg |
556 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
35195258 |
acccggcaaaatactttatgaaatgggagg |
35195287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1779 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: scaffold1779
Description:
Target: scaffold1779; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 160 - 636
Target Start/End: Original strand, 48 - 524
Alignment:
| Q |
160 |
ttcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaaccagatt |
259 |
Q |
| |
|
|||||||||||| | ||||| |||| |||||||| | |||||||| ||||||||||||| | ||| || ||||||||||||||||||||||||| |||| |
|
|
| T |
48 |
ttcgcgaggagctggatgagaagaaactctcatgtccagttctgtagtagagatggaattcataaacaaacatcaactataaccccaaaagaacccgatt |
147 |
T |
|
| Q |
260 |
ccgtaaacaacatcgaggaagaatgaaaggaaaagcctatcgaggtaatacaatttccttcggaaaatatgctcttcaggcacttgagcccgcttggatc |
359 |
Q |
| |
|
|||||||||||| ||||||||||||| || | | | |||||||||||| |||| ||||| | |||||||||||| |||||||| ||||||||||| |
|
|
| T |
148 |
tcgtaaacaacatagaggaagaatgaaggggatatcttatcgaggtaatcggatttgtttcggtagatatgctcttcaagcacttgaacccgcttggatt |
247 |
T |
|
| Q |
360 |
acatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgggaaaatatgggtacgcatatttccagacaaacccgttacag |
459 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||| |||||||||| ||||| ||||| ||| |||||||||| ||||||||||||||||| ||||| | |
|
|
| T |
248 |
acatctagacaaatagaagcggggcgccgcgcaatgacacgaaatgtacgccgtggtggaaaactatgggtacgtatatttccagacaaaccagttacgg |
347 |
T |
|
| Q |
460 |
taagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgt |
559 |
Q |
| |
|
|||||||||| ||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||| |||||||||||||||| | || || |
|
|
| T |
348 |
taagacctacagaaacacgtatgggttcggggaaaggatctcccgagtattgggtagctgtcgttaaaccgggcagaatactttatgaaatgagtggagt |
447 |
T |
|
| Q |
560 |
cccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcag |
636 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||| || |||||||||||| ||| ||||||||| |||||| |
|
|
| T |
448 |
agccgaaaatatagccagaaaggctatttcaatagcggcgtcaaaaatgcctataaaaacgcaattcattatttcag |
524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 453 - 694
Target Start/End: Complemental strand, 36841142 - 36840901
Alignment:
| Q |
453 |
gttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgg |
552 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841142 |
gttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgg |
36841043 |
T |
|
| Q |
553 |
gaggcgtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacg |
652 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36841042 |
gaggggtcccagaaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacg |
36840943 |
T |
|
| Q |
653 |
aaataggtctttagtatgnnnnnnntggtaattgttggtttc |
694 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||| |
|
|
| T |
36840942 |
aaataggtctttagtatgaaaaaaatggtaattgttggtttc |
36840901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 167 - 215
Target Start/End: Complemental strand, 17442435 - 17442387
Alignment:
| Q |
167 |
ggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
215 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
17442435 |
ggagccgtacgaggtgaaaatctcatgtacggttttgtaatagagatgg |
17442387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 99; Significance: 2e-48; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 465 - 670
Target Start/End: Original strand, 18374946 - 18375148
Alignment:
| Q |
465 |
cctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgttaaacccggcaaaatactttatgaaatgggaggcgtcccag |
564 |
Q |
| |
|
|||||||||||| ||||||||||| |||||| |||| | || ||||| ||| ||| |||||||| | | ||||||||||||||||||| || ||||| |
|
|
| T |
18374946 |
cctaccgaaacgagtatgggttcgagaaaagaatcttctga-tattgaatagttgttgttaaacctgactaaatactttatgaaatgggggg--tcccaa |
18375042 |
T |
|
| Q |
565 |
aaaatatagctagaaaggctatttcaatagcggcatccaaaatgcctatacgaactcaattcattctttcagaataatcattagaacgaaataggtcttt |
664 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| ||||||||||||||| ||||| |
|
|
| T |
18375043 |
aaaatatagctagaaagaatatttcaatagcggcatccaaaatgcctatacgaactcaatttattctttgagaataactattagaacgaaatagatcttt |
18375142 |
T |
|
| Q |
665 |
agtatg |
670 |
Q |
| |
|
| |||| |
|
|
| T |
18375143 |
aatatg |
18375148 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 154 - 255
Target Start/End: Complemental strand, 54630277 - 54630176
Alignment:
| Q |
154 |
gatttattcgcgaggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatggaattgagaaataaccatcaactataaccccaaaagaac |
253 |
Q |
| |
|
|||||||||| ||||||| ||||| ||||||||||||||||||| || |||||||||||||||||||||||||||| |||||||||||| |||||||||| |
|
|
| T |
54630277 |
gatttattcgtgaggagctgtatggggtgaaaatctcatgtacgattttgtaatagagatggaattgagaaataactatcaactataacaccaaaagaac |
54630178 |
T |
|
| Q |
254 |
ca |
255 |
Q |
| |
|
|| |
|
|
| T |
54630177 |
ca |
54630176 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 17223756 - 17223707
Alignment:
| Q |
166 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17223756 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
17223707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 13226970 - 13227011
Alignment:
| Q |
164 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13226970 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
13227011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 81; Significance: 1e-37; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 424 - 552
Target Start/End: Original strand, 10258309 - 10258437
Alignment:
| Q |
424 |
tatgggtacgcatatttccagacaaacccgttacagtaagacctaccgaaacgcgtatgggttcgggaaaaggatctcccgaatattgggtagctgtcgt |
523 |
Q |
| |
|
|||||||| ||||| |||||||||||| |||| |||||||||||| |||||| ||||||||| |||||| ||||||||||||||||||||||||||| | |
|
|
| T |
10258309 |
tatgggtatgcataattccagacaaacttgttagagtaagacctactgaaacgtgtatgggtttgggaaacggatctcccgaatattgggtagctgtcat |
10258408 |
T |
|
| Q |
524 |
taaacccggcaaaatactttatgaaatgg |
552 |
Q |
| |
|
|||| |||| ||||||||||||||||||| |
|
|
| T |
10258409 |
taaatccggtaaaatactttatgaaatgg |
10258437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 19153829 - 19153780
Alignment:
| Q |
166 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
215 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19153829 |
aggagccgtacgaggtgaaaatctcatgtacggttctgtaatagagatgg |
19153780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 135 - 188
Target Start/End: Original strand, 31058812 - 31058865
Alignment:
| Q |
135 |
ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc |
188 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058812 |
ggttaaatatttttgaatcgatttattcgcgaggagccgtatgaggtgaaaatc |
31058865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 14543003 - 14543052
Alignment:
| Q |
166 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14543003 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
14543052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 31058724 - 31058773
Alignment:
| Q |
78 |
tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa |
127 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31058724 |
tacaaatttctaatatgtcaaaaaatcccgcgattgtattctattttaaa |
31058773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 203
Target Start/End: Original strand, 4639385 - 4639423
Alignment:
| Q |
165 |
gaggagccgtatgaggtgaaaatctcatgtacggttctg |
203 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
4639385 |
gaggagccgtatgagatgaaaatctcacgtacggttctg |
4639423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 2e-17; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 533 - 669
Target Start/End: Complemental strand, 46634463 - 46634322
Alignment:
| Q |
533 |
caaaatactttatgaaatgggaggcgtcccagaaaa-tatagctagaaaggctatttcaatagcggc-----atccaaaatgcctatacgaactcaattc |
626 |
Q |
| |
|
||||||| |||||||||||||||| | ||| |||| |||||||||||| |||||||||||||| || |||||| |||||||||| ||| ||| | |
|
|
| T |
46634463 |
caaaatattttatgaaatgggagggattccaaaaaaatatagctagaaaagctatttcaatagcagcgcgacatccaagatgcctatacaaacctaat-c |
46634365 |
T |
|
| Q |
627 |
attctttcagaataatcattagaacgaaataggtctttagtat |
669 |
Q |
| |
|
|||||||||||| ||| |||||||| ||||| ||||||||||| |
|
|
| T |
46634364 |
attctttcagaagaataattagaaccaaatatgtctttagtat |
46634322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 166 - 215
Target Start/End: Original strand, 6930438 - 6930487
Alignment:
| Q |
166 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6930438 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtattagagatgg |
6930487 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 1399882 - 1399923
Alignment:
| Q |
164 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
205 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1399882 |
cgaggagtcgtatgaggtgaaaatctcatgtacggttctgta |
1399923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 18961072 - 18961112
Alignment:
| Q |
164 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
205 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18961072 |
cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta |
18961112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 164 - 205
Target Start/End: Original strand, 18993033 - 18993073
Alignment:
| Q |
164 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
205 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
18993033 |
cgaggagcc-tatgaggtgaaaatctcatgtacggttctgta |
18993073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0008 (Bit Score: 46; Significance: 7e-17; HSPs: 1)
Name: scaffold0008
Description:
Target: scaffold0008; HSP #1
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 166 - 215
Target Start/End: Complemental strand, 265217 - 265168
Alignment:
| Q |
166 |
aggagccgtatgaggtgaaaatctcatgtacggttctgtaatagagatgg |
215 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
265217 |
aggagccgtatgaggtgaaaatcttatgtacggttctgtaatagagatgg |
265168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0625 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0625
Description:
Target: scaffold0625; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 164 - 205
Target Start/End: Complemental strand, 8664 - 8623
Alignment:
| Q |
164 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
205 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8664 |
cgaggagccgtatgaggtgaaaatctcatgtacggttctgta |
8623 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330 (Bit Score: 42; Significance: 0.00000000000002; HSPs: 2)
Name: scaffold0330
Description:
Target: scaffold0330; HSP #1
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 47 - 92
Target Start/End: Complemental strand, 13478 - 13433
Alignment:
| Q |
47 |
tccatatttggttctatatcaaagcaagatatacaaatttctaata |
92 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
13478 |
tccatatttggttctatatcaaagcaaaatatacaaatttctaata |
13433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0330; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 127
Target Start/End: Complemental strand, 13412 - 13377
Alignment:
| Q |
92 |
atgtcaaaaaatcccgcgattgtattctattttaaa |
127 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||| |
|
|
| T |
13412 |
atgtcaaaaaatctcgcgattgtattctattttaaa |
13377 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000007; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 342 - 418
Target Start/End: Complemental strand, 5478497 - 5478421
Alignment:
| Q |
342 |
cttgagcccgcttggatcacatctagacaaatagaagcagggcgacgggcaatgtcacgaaatgttcgccgaggtgg |
418 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| || ||||| |||||||||||||||||| |||||||| |
|
|
| T |
5478497 |
cttgagcctgcttggatcacatctagacaaatagaaatgaggtgacggataatgtcacgaaatgttcgtcgaggtgg |
5478421 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 65
Target Start/End: Original strand, 9857883 - 9857946
Alignment:
| Q |
1 |
caacattatctagttagatatggatagcaaaaaaggtctataagaatccatatttggttctatat |
65 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| |||||||| |||||||||||| ||||||||| |
|
|
| T |
9857883 |
caacattatctagttagacatg-atagcaaaaatggtctatacgaatccatatttcgttctatat |
9857946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 31266029 - 31265991
Alignment:
| Q |
165 |
gaggagccgtatgaggtgaaaatctcatgtacggttctg |
203 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
31266029 |
gaggagccgtatgagatgaaaatctcacgtacggttctg |
31265991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0477 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0477
Description:
Target: scaffold0477; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 165 - 203
Target Start/End: Complemental strand, 8731 - 8693
Alignment:
| Q |
165 |
gaggagccgtatgaggtgaaaatctcatgtacggttctg |
203 |
Q |
| |
|
||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8731 |
gaggagccgtatgagatgaaaatctcacgtacggttctg |
8693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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