View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12454_low_5 (Length: 467)
Name: NF12454_low_5
Description: NF12454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12454_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 101 - 449
Target Start/End: Original strand, 43062205 - 43062553
Alignment:
| Q |
101 |
gaaatacgtagtaacacactggtatcagagctcccaaaagatcataggagtcatgcaaccttccatattgctttgatatgttgatctgttttttcataaa |
200 |
Q |
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| T |
43062205 |
gaaatacgtagcaacacactggtatcagagctcccaaaagatcataggagtcatgcaaccttccatattgctttgatatgttgatctgttttttcataaa |
43062304 |
T |
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| Q |
201 |
atctagttccgatttccaatgttttttgtcactgattcgtattactgacctctgtattgcataatgttgtcttaacttctttacgttacaatctgctatt |
300 |
Q |
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| T |
43062305 |
atctagttccgatttccaatgttttttgtcactgattcgtattattgacctctgtattgcataatgttgtcttaacttctttacgttacaatctgctatt |
43062404 |
T |
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| Q |
301 |
tggtttctgtattcgggcataggttattaactatcaaaattatgctaggaaaaagaccatttatccaaaagagtctgagccgaagttatgtaaccgttat |
400 |
Q |
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| T |
43062405 |
tggtttctgtattcgggcataggttattaactatcaaaattttgctaggaaaaagaccatttatccaaaagagtctgagccgaagttatgtaaccgttat |
43062504 |
T |
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| Q |
401 |
gaaatatgacatcagttatagtagttaatgcgttattatagtccttcct |
449 |
Q |
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| T |
43062505 |
gaaatatgacatcagttatagtagttaatgcgttattatagtccttcct |
43062553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 58 - 101
Target Start/End: Original strand, 43061935 - 43061978
Alignment:
| Q |
58 |
gcacacaatctccaaccaacacctcttttatttttagattttgg |
101 |
Q |
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| T |
43061935 |
gcacacaatctccaaccaacaccttttttatttttagattttgg |
43061978 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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