View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12454_low_8 (Length: 315)
Name: NF12454_low_8
Description: NF12454
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12454_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 162; Significance: 2e-86; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 24 - 185
Target Start/End: Original strand, 30059333 - 30059494
Alignment:
| Q |
24 |
tcttgttctgttgtttctctttgttgtctctgttagaaagattcttgtgtacaagagaattggaatcgttaaggacagtactacctcaaatgatagtcca |
123 |
Q |
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| T |
30059333 |
tcttgttctgttgtttctctttgttgtctctgttagaaagattcttgtgtacaagagaattggaatcgttaaggacagtactacctcaaatgatagtcca |
30059432 |
T |
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| Q |
124 |
atttgcagtgttattgatagagaaacgagtgatgtttcaataggtgtttggttcaagttatc |
185 |
Q |
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| T |
30059433 |
atttgcagtgttattgatagagaaacgagtgatgtttcaataggtgtttggttcaagttatc |
30059494 |
T |
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Target: chr1; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 243 - 308
Target Start/End: Original strand, 30059552 - 30059617
Alignment:
| Q |
243 |
aggtgctatcatttggggtgaggttctacactggtcacttatttctgtgccagcttcacaggttct |
308 |
Q |
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| T |
30059552 |
aggtgctatcatttggggtgaggttctacactggtcacttatttctgtgccagcttcacaggttct |
30059617 |
T |
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