View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12455_high_5 (Length: 247)
Name: NF12455_high_5
Description: NF12455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12455_high_5 |
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Alignment Details
Target: chr1 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 30059184 - 30058954
Alignment:
| Q |
1 |
tatagatgaagatggtacgaattcaaaatgatgggtcagcgagaaaagcattacaggatttgggaaacgaagatgaagcagtaaaaatgaaattttgaag |
100 |
Q |
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| T |
30059184 |
tatagatgaagatggaacgaattcaaaatgatgggtcggcgagaaaagcattacaggatttgggaaacgaagatgaagcagtaaaaatgaaattttgaag |
30059085 |
T |
|
| Q |
101 |
gtagagaaagaaacccagtggagaaaaatgcaaaattcaggaactgggttgttgtgaagaattgtgaggcaagcttgttaagaatggtgatgaaattgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||| |
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| T |
30059084 |
gtagagaaagaaacccagtggagaaaaatgcaaaattcaggaactgggttgttgtgaagaattgtgaggcaagcttgttatgaatggtgatgaagttgtt |
30058985 |
T |
|
| Q |
201 |
gttcaacaagcttcgcctctgaaatggtgat |
231 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
30058984 |
gttcaacaagcttcgcctctgaaatggtgat |
30058954 |
T |
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