View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12455_low_1 (Length: 440)
Name: NF12455_low_1
Description: NF12455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12455_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 379; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 379; E-Value: 0
Query Start/End: Original strand, 11 - 422
Target Start/End: Original strand, 30545068 - 30545478
Alignment:
| Q |
11 |
cagagagaatggtttatttaaggtatctatcaaattacaagtgttcaacatgttgataagatcgtattagtagaatgctgcctattgttannnnnnnata |
110 |
Q |
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| T |
30545068 |
cagagagaatggtttatttaaggtatctatcaaattacaagtgttcaacatgttgataagatcgtattagtagaatgctgcctattgttatttttttata |
30545167 |
T |
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| Q |
111 |
cttgttttggagtgttgaatcatgagaaaatgttatgttgcttaagactttgaaagacctttctcttgaaggaaataagacacatgagcttggatccttg |
210 |
Q |
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| T |
30545168 |
cttgttttggagtgttgaatcttgagaaaatgttatgttgcttaagactttgaaagacctttctcttgaaggaaataagacacatgagcttggatccttg |
30545267 |
T |
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| Q |
211 |
tggaaatggatcctctcaattttgtctgtctcatgtttttctctattttcacatctcaactcttatggggcttgataagtgaggaaaagggctatgatgc |
310 |
Q |
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| T |
30545268 |
tggaaatggatcctctcaattttgtctgtctcatgtttt-ctctattttcacatctcaactcttatggggcttgataagtgaggaaaagggctatgatgc |
30545366 |
T |
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| Q |
311 |
ggcctttcgacagatgggactgtgcacgttgctgacgaaattgttttcagatgattttattgtcagtttacactgcactaagctgcagtcagacagttaa |
410 |
Q |
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| T |
30545367 |
ggcctttcgacagatgggactgtgcacgttgctgacgaaattgttttcagatgattttattgtcagtttacactgcactaagctgcagtcagacagttaa |
30545466 |
T |
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| Q |
411 |
ttggtagggcat |
422 |
Q |
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| T |
30545467 |
ttggtagggcat |
30545478 |
T |
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