View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12455_low_3 (Length: 345)
Name: NF12455_low_3
Description: NF12455
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12455_low_3 |
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Alignment Details
Target: chr8 (Bit Score: 224; Significance: 1e-123; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 15 - 336
Target Start/End: Original strand, 1021089 - 1021414
Alignment:
| Q |
15 |
catcatttcaataaacctaaccaacctagatatcatagcacttcagattaactaacacttgcactt-gtttttcaagttctt-gtttcccttcaaaacct |
112 |
Q |
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| T |
1021089 |
catcacttcagtaaacctaaccaacctagata-----gcacttcagattaac----acttgcactttgtttttcaagttctttgtttcccttcaaaacct |
1021179 |
T |
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| Q |
113 |
tcttcaacatttgtttttgtttaatatacgcatacacacgttcaaata-----------tacggtatatatataccacctgaaacaatgggttgcacggt |
201 |
Q |
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| T |
1021180 |
tcttcaacatttgtttttgtttaatatacgcatacagacgttcaaatacgtgtataatatacggtatatatataccacctgaaacaatgggttgcactgt |
1021279 |
T |
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| Q |
202 |
gtctaaactcgacaacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcat |
301 |
Q |
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| T |
1021280 |
gtctaaactcgacaacgaagaaacggtacgacggtgcaaagaacgccgccgtctcatgaaggaagcactttacgctcgccactacctcgcagcggctcat |
1021379 |
T |
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| Q |
302 |
tctgattactgtaactctcttcgcctcacaggttc |
336 |
Q |
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| T |
1021380 |
tctgattactgtaactctcttcgcctcaccggttc |
1021414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 298 - 336
Target Start/End: Original strand, 4970737 - 4970775
Alignment:
| Q |
298 |
tcattctgattactgtaactctcttcgcctcacaggttc |
336 |
Q |
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| T |
4970737 |
tcattctgattactataactctcttcgcctcaccggttc |
4970775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 298 - 336
Target Start/End: Complemental strand, 6345091 - 6345053
Alignment:
| Q |
298 |
tcattctgattactgtaactctcttcgcctcacaggttc |
336 |
Q |
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| T |
6345091 |
tcattctgattactgtaactctcttcgcctcaccggttc |
6345053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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