View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF12456_low_2 (Length: 381)
Name: NF12456_low_2
Description: NF12456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12456_low_2 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 1 - 370
Target Start/End: Original strand, 18445110 - 18445474
Alignment:
| Q |
1 |
aaatcgattttgttttgttgagttagacttaacccaaattctaatacaaacactaagataacacgatgaaaatgaaaactgtagcttcatttcccttcta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
18445110 |
aaatcgattttgttttgttgagttagacttaacccaaattctaatacaaacactaaaataacacgatgaaaatgaaaattgtagcttcatttcccttcta |
18445209 |
T |
|
| Q |
101 |
tattactagatttcttcggtgatgatattggtaaactaatcgtctcataannnnnnnnnncaatcaagagagagtaaagaatgaattatcactgatgaaa |
200 |
Q |
| |
|
||||||||||||||| ||||| |||||||||||||| ||| ||||||| ||| |||||| |||||||||||||||||||||||||| |
|
|
| T |
18445210 |
tattactagatttctgcggtggtgatattggtaaaccaattgtctcatt-ttttttttttcaaacaagag----taaagaatgaattatcactgatgaaa |
18445304 |
T |
|
| Q |
201 |
tatcattgacattgacatatggatatttaaaagaaatcaaataaacacaatatatacaaccttatatgttcccactttagcaagttcccgaagcttattt |
300 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
18445305 |
tatcattgacattgacatatggatatggaaaagaaatcaaataaacgtaatatatacaaccttgtatgttcccactttagcaagttcccgaagcttattt |
18445404 |
T |
|
| Q |
301 |
atcagatacttcgaagtagtgattccaggaacgtattcgttatcaatgccatttttctctacctgcaaca |
370 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
18445405 |
atcagatacttcgaagtagtaattcctggaacgtattcattatcaatgccatttttctctacctgcaaca |
18445474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University