View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF12456_low_5 (Length: 253)

Name: NF12456_low_5
Description: NF12456
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF12456_low_5
NF12456_low_5
[»] chr6 (19 HSPs)
chr6 (17-235)||(9888726-9888944)
chr6 (55-126)||(12766941-12767012)
chr6 (55-126)||(21802613-21802684)
chr6 (56-126)||(14224500-14224570)
chr6 (55-101)||(31881860-31881906)
chr6 (55-103)||(34794531-34794579)
chr6 (55-126)||(187764-187835)
chr6 (55-126)||(14313858-14313929)
chr6 (55-126)||(25527724-25527795)
chr6 (55-126)||(34250717-34250788)
chr6 (55-101)||(4125896-4125942)
chr6 (55-101)||(7448248-7448294)
chr6 (55-101)||(12026206-12026252)
chr6 (55-101)||(14306811-14306857)
chr6 (55-101)||(21801958-21802004)
chr6 (56-97)||(17312108-17312149)
chr6 (55-103)||(188442-188490)
chr6 (55-95)||(21847378-21847418)
chr6 (55-99)||(22022283-22022327)
[»] chr1 (32 HSPs)
chr1 (55-123)||(7306956-7307024)
chr1 (55-105)||(8061041-8061091)
chr1 (55-105)||(43504467-43504517)
chr1 (55-108)||(4007565-4007618)
chr1 (55-126)||(11917127-11917198)
chr1 (55-126)||(18407210-18407281)
chr1 (56-103)||(43320587-43320634)
chr1 (55-126)||(45737994-45738065)
chr1 (55-126)||(51362495-51362565)
chr1 (55-101)||(1116453-1116499)
chr1 (55-105)||(38011862-38011912)
chr1 (55-104)||(27521946-27521995)
chr1 (55-103)||(18406547-18406595)
chr1 (55-99)||(27225697-27225741)
chr1 (55-126)||(16536366-16536437)
chr1 (55-126)||(36605409-36605480)
chr1 (55-126)||(41321507-41321578)
chr1 (55-126)||(41322204-41322275)
chr1 (55-126)||(41576020-41576091)
chr1 (55-126)||(42831210-42831281)
chr1 (55-126)||(50144060-50144131)
chr1 (55-101)||(4601712-4601758)
chr1 (55-101)||(19071731-19071777)
chr1 (55-101)||(19119621-19119667)
chr1 (55-105)||(19997619-19997669)
chr1 (55-101)||(25068344-25068390)
chr1 (55-101)||(28044498-28044544)
chr1 (55-101)||(45737324-45737370)
chr1 (56-101)||(27930784-27930829)
chr1 (55-108)||(43319928-43319981)
chr1 (55-103)||(11916468-11916516)
chr1 (55-99)||(27931314-27931358)
[»] chr3 (25 HSPs)
chr3 (56-104)||(33979290-33979338)
chr3 (55-126)||(1263067-1263138)
chr3 (55-105)||(25480545-25480595)
chr3 (55-101)||(27255307-27255353)
chr3 (55-103)||(16067244-16067292)
chr3 (55-126)||(4558029-4558100)
chr3 (55-126)||(4558747-4558818)
chr3 (55-126)||(11056568-11056639)
chr3 (51-126)||(13625909-13625984)
chr3 (55-126)||(18364627-18364698)
chr3 (55-126)||(18365289-18365360)
chr3 (55-126)||(23308933-23309004)
chr3 (55-126)||(33115242-33115313)
chr3 (55-126)||(44500051-44500122)
chr3 (55-126)||(47794660-47794731)
chr3 (55-126)||(48842031-48842101)
chr3 (55-101)||(1262419-1262465)
chr3 (55-101)||(2756615-2756661)
chr3 (55-101)||(11345367-11345413)
chr3 (56-126)||(25259947-25260017)
chr3 (55-101)||(30605354-30605400)
chr3 (55-101)||(32737179-32737225)
chr3 (55-101)||(45241223-45241269)
chr3 (55-101)||(54403581-54403627)
chr3 (55-108)||(54605777-54605830)
[»] chr8 (19 HSPs)
chr8 (55-126)||(32905336-32905407)
chr8 (55-126)||(40791043-40791114)
chr8 (55-105)||(34923860-34923909)
chr8 (56-101)||(37304902-37304947)
chr8 (55-103)||(41312389-41312437)
chr8 (55-126)||(3075303-3075374)
chr8 (55-126)||(14879517-14879588)
chr8 (55-126)||(32904228-32904299)
chr8 (55-101)||(5551575-5551621)
chr8 (55-101)||(6099485-6099531)
chr8 (55-101)||(8442678-8442724)
chr8 (55-101)||(11760076-11760122)
chr8 (55-101)||(14880197-14880243)
chr8 (55-101)||(24778010-24778056)
chr8 (55-101)||(34679933-34679979)
chr8 (55-108)||(11140109-11140162)
chr8 (55-107)||(37266151-37266203)
chr8 (58-126)||(39998367-39998435)
chr8 (55-99)||(44284359-44284403)
[»] chr7 (28 HSPs)
chr7 (55-126)||(32388156-32388227)
chr7 (55-126)||(38669990-38670061)
chr7 (55-101)||(5228647-5228693)
chr7 (55-126)||(19156084-19156155)
chr7 (55-126)||(20755483-20755554)
chr7 (55-126)||(40344445-40344516)
chr7 (55-105)||(10412564-10412614)
chr7 (55-101)||(29615536-29615582)
chr7 (55-125)||(36848506-36848576)
chr7 (55-126)||(2790075-2790146)
chr7 (55-126)||(11639891-11639962)
chr7 (55-118)||(20261590-20261653)
chr7 (55-126)||(29823325-29823396)
chr7 (55-126)||(38790067-38790138)
chr7 (55-126)||(40401560-40401631)
chr7 (55-126)||(42813587-42813658)
chr7 (55-101)||(3341449-3341495)
chr7 (55-101)||(14078376-14078422)
chr7 (55-101)||(14388404-14388450)
chr7 (55-101)||(22711654-22711700)
chr7 (55-101)||(27619642-27619688)
chr7 (55-105)||(36687312-36687362)
chr7 (55-101)||(38987772-38987818)
chr7 (55-101)||(40400922-40400968)
chr7 (56-101)||(8535443-8535488)
chr7 (59-108)||(30738203-30738252)
chr7 (55-108)||(38670692-38670745)
chr7 (55-108)||(42813035-42813088)
[»] chr2 (23 HSPs)
chr2 (55-126)||(11942946-11943017)
chr2 (55-101)||(40947451-40947497)
chr2 (55-126)||(11563791-11563862)
chr2 (55-105)||(1366421-1366471)
chr2 (55-101)||(5475142-5475188)
chr2 (55-101)||(7940002-7940048)
chr2 (58-126)||(12414301-12414369)
chr2 (58-126)||(12426361-12426429)
chr2 (55-101)||(3044947-3044993)
chr2 (55-101)||(7939346-7939392)
chr2 (55-105)||(14335716-14335766)
chr2 (55-101)||(16111175-16111221)
chr2 (55-101)||(37009014-37009060)
chr2 (55-105)||(40020763-40020813)
chr2 (55-108)||(8313668-8313721)
chr2 (55-108)||(13873994-13874047)
chr2 (55-108)||(14014119-14014172)
chr2 (55-104)||(16599541-16599590)
chr2 (55-108)||(32875169-32875222)
chr2 (55-104)||(38910691-38910740)
chr2 (82-126)||(8726721-8726765)
chr2 (55-103)||(10357129-10357177)
chr2 (55-99)||(44332391-44332435)
[»] chr4 (32 HSPs)
chr4 (55-108)||(56310075-56310128)
chr4 (55-126)||(17730189-17730260)
chr4 (55-126)||(46095401-46095472)
chr4 (55-101)||(13482203-13482249)
chr4 (55-101)||(25010066-25010112)
chr4 (57-126)||(37423138-37423207)
chr4 (55-103)||(17722768-17722816)
chr4 (55-99)||(51019673-51019717)
chr4 (55-126)||(615429-615500)
chr4 (55-126)||(12250669-12250740)
chr4 (55-126)||(16192324-16192395)
chr4 (55-126)||(26705678-26705749)
chr4 (55-126)||(33047238-33047309)
chr4 (55-126)||(44665194-44665265)
chr4 (55-126)||(45847776-45847847)
chr4 (55-126)||(47030491-47030562)
chr4 (55-101)||(755535-755581)
chr4 (55-101)||(19313365-19313411)
chr4 (55-101)||(23722060-23722106)
chr4 (55-101)||(30192529-30192575)
chr4 (55-101)||(35667292-35667338)
chr4 (55-125)||(35667390-35667460)
chr4 (55-101)||(35667575-35667621)
chr4 (55-101)||(35667765-35667811)
chr4 (55-101)||(41919917-41919963)
chr4 (55-101)||(54096724-54096770)
chr4 (55-101)||(55068863-55068909)
chr4 (55-101)||(55815006-55815052)
chr4 (56-101)||(6232370-6232415)
chr4 (55-104)||(13772391-13772440)
chr4 (55-99)||(20545027-20545071)
chr4 (55-99)||(29429708-29429752)
[»] scaffold0068 (1 HSPs)
scaffold0068 (55-126)||(59255-59326)
[»] chr5 (23 HSPs)
chr5 (55-126)||(3933987-3934058)
chr5 (55-126)||(19408534-19408605)
chr5 (55-118)||(20570836-20570899)
chr5 (55-126)||(31476973-31477044)
chr5 (55-126)||(36737457-36737528)
chr5 (55-126)||(36742116-36742187)
chr5 (51-101)||(13686626-13686676)
chr5 (55-101)||(32458521-32458567)
chr5 (56-105)||(31601553-31601602)
chr5 (56-104)||(27028650-27028698)
chr5 (55-126)||(8573357-8573428)
chr5 (55-126)||(13685963-13686034)
chr5 (55-126)||(17781054-17781124)
chr5 (55-126)||(27979226-27979297)
chr5 (55-101)||(4055417-4055463)
chr5 (55-101)||(6029474-6029520)
chr5 (55-101)||(9017667-9017713)
chr5 (60-118)||(38498043-38498101)
chr5 (55-93)||(42598996-42599034)
chr5 (56-101)||(1932031-1932076)
chr5 (55-96)||(4877383-4877424)
chr5 (55-99)||(20570150-20570194)
chr5 (55-99)||(31850026-31850070)
[»] scaffold0115 (1 HSPs)
scaffold0115 (55-101)||(31362-31408)
[»] scaffold2113 (1 HSPs)
scaffold2113 (55-126)||(721-792)
[»] scaffold0533 (1 HSPs)
scaffold0533 (55-126)||(9481-9551)
[»] scaffold0368 (1 HSPs)
scaffold0368 (55-126)||(11266-11337)
[»] scaffold0289 (1 HSPs)
scaffold0289 (55-126)||(3403-3474)
[»] scaffold0189 (1 HSPs)
scaffold0189 (55-101)||(11309-11355)
[»] scaffold0361 (1 HSPs)
scaffold0361 (55-103)||(16503-16551)


Alignment Details
Target: chr6 (Bit Score: 146; Significance: 5e-77; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 17 - 235
Target Start/End: Complemental strand, 9888944 - 9888726
Alignment:
Q  17 gtgaataaggtgttagaatcgatatgagtccttcgagggtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatg 116  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||  ||||||||||||| ||| ||||| | || |||||||    
T  9888944 gtgaataaggtgttagaatcgatatgagtccttcgagagtatattttaacataaaagtggagtggagtataattcaaacatttttaaagggaggagaatg 9888845  T
Q  117 tagtttactcnnnnnnnaataagtgtgattggaatttatttcctcacgatttgggatggagtcagtatatttataaaacctagcaataaagtttagattg 216  Q
    ||||||||||       ||||| ||||||| ||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9888844 tagtttactctttttttaataaatgtgatttgaatttatttccttacattttgggatggagtcagtatatttataaaacctagcaataaagtttagattg 9888745  T
Q  217 cattcaattatgagtttat 235  Q
    |||||||||||||||||||    
T  9888744 cattcaattatgagtttat 9888726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 12767012 - 12766941
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||  || ||||| |||| |||||||||||||||||||| || |||| |||| |||||||    
T  12767012 gtatattttaacataggaggggaggggagtgtaattcaagcatctttaaggggaggagagtgtaatttactc 12766941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 21802613 - 21802684
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || |||||||||| |||||||||||||||| ||  || |||| |||| |||||||    
T  21802613 gtatattttaacataagaggggaggagagtgtaattcaagcatcttttagaggaggagagtgtaatttactc 21802684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 14224500 - 14224570
Alignment:
Q  56 tatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    ||||||||||||||| ||| ||||||||| |||||||||||||||| |||  | |||| |||| |||||||    
T  14224500 tatattttaacataagagtagaggagagtgtaattcaagcatctttgagggaatgagagtgtaatttactc 14224570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 31881906 - 31881860
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    ||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  31881906 gtatattttaacataaaaggggaggggagtgtaattcaagcatcttt 31881860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 34794531 - 34794579
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaa 103  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||||    
T  34794531 gtatattttaacataagaggggaggggagtgtaattcaagcatctttaa 34794579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 187835 - 187764
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || | ||| |||| |||||||||||||||| ||| || ||||||||| |||||||    
T  187835 gtatattttaacttaagagggaaggtgagtgtaattcaagcatctttgaggggaggagaatgtaatttactc 187764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 14313858 - 14313929
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| ||| || | || |||| |||||||    
T  14313858 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaggggatgggagtgtaatttactc 14313929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 25527795 - 25527724
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || |||||||||| |||||||||||||||| ||| || | || |||| |||||||    
T  25527795 gtatattttaacttaagaggggaggagagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 25527724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 34250717 - 34250788
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||| ||||| || |||| ||||| |||||||||||||||| | | || |||| ||||||||||||    
T  34250717 gtatattttagcataagaggggagaagagtgtaattcaagcatctttgaagggaggagagtgtagtttactc 34250788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 4125942 - 4125896
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||||| ||||| ||||||||||    
T  4125942 gtatattttaacataagaggggaggagagtgtaatttaagcatcttt 4125896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 7448294 - 7448248
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || | |||||||| ||||||||||||||||    
T  7448294 gtatattttaacataagagagaaggagagtgtaattcaagcatcttt 7448248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 12026206 - 12026252
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  12026206 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 12026252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 14306857 - 14306811
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||| | ||||||||||||||||    
T  14306857 gtatattttaacataagaggggaggagaatgtaattcaagcatcttt 14306811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 21802004 - 21801958
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| | |||||| |||| ||||||||||||||||    
T  21802004 gtatattttaacataagaatggaggggagtgtaattcaagcatcttt 21801958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 97
Target Start/End: Original strand, 17312108 - 17312149
Alignment:
Q  56 tatattttaacataaaagtggaggagagtataattcaagcat 97  Q
    ||||||||||||||| |||||||| |||| ||||||||||||    
T  17312108 tatattttaacataagagtggaggggagtgtaattcaagcat 17312149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 188442 - 188490
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaa 103  Q
    |||||||||||| ||| || ||||| |||| ||||||||||||||||||    
T  188442 gtatattttaacttaagaggggaggggagtgtaattcaagcatctttaa 188490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 95
Target Start/End: Original strand, 21847378 - 21847418
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagc 95  Q
    |||||||||||||||| || |||||||||| ||||||||||    
T  21847378 gtatattttaacataagaggggaggagagtctaattcaagc 21847418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 22022283 - 22022327
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatct 99  Q
    |||||||||||||||| || ||| |||||| ||||||||||||||    
T  22022283 gtatattttaacataagaggggatgagagtgtaattcaagcatct 22022327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 32)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 55 - 123
Target Start/End: Complemental strand, 7307024 - 7306956
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagttta 123  Q
    ||||||||||||||||||| ||| ||||||||||||||||||||||||||| || |||| |||| ||||    
T  7307024 gtatattttaacataaaaggggatgagagtataattcaagcatctttaaggggaggagagtgtaattta 7306956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 8061091 - 8061041
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaagg 105  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||||||    
T  8061091 gtatattttaacataagagaggaggagagtgtaattcaagcatctttaagg 8061041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 43504467 - 43504517
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaagg 105  Q
    |||||||||||||||| || ||||||||||||||||||||||| |||||||    
T  43504467 gtatattttaacataagaggggaggagagtataattcaagcatttttaagg 43504517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 4007618 - 4007565
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggaga 108  Q
    |||||||||||||||| || |||||||||| ||||| |||||||||||||||||    
T  4007618 gtatattttaacataagaggggaggagagtgtaatttaagcatctttaaggaga 4007565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 11917127 - 11917198
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    ||||||||||||||| ||  |||||||||| |||||||||||||||||| | || |||| |||| |||||||    
T  11917127 gtatattttaacatagaataggaggagagtgtaattcaagcatctttaaagggaggagagtgtaatttactc 11917198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 18407210 - 18407281
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || |||||||||| |||||||| ||||||||||| || | || |||| |||||||    
T  18407210 gtatattttaacataagaggggaggagagtgtaattcaaacatctttaaggggaggggagtgtaatttactc 18407281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 56 - 103
Target Start/End: Original strand, 43320587 - 43320634
Alignment:
Q  56 tatattttaacataaaagtggaggagagtataattcaagcatctttaa 103  Q
    |||||||||||||||||| ||||| |||| ||||||||||||||||||    
T  43320587 tatattttaacataaaaggggaggggagtgtaattcaagcatctttaa 43320634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 45738065 - 45737994
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || |||||||||| |||||||||||||||| ||| || | || |||| |||||||    
T  45738065 gtatattttaacataagaggggaggagagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 45737994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 51362495 - 51362565
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    ||||||||||||||||||| |||||| ||| |||||||||||||||| ||| |||| || |||| |||||||    
T  51362495 gtatattttaacataaaaggggaggaaagtgtaattcaagcatctttgagg-gaagggagtgtaatttactc 51362565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 1116499 - 1116453
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    ||||||||||||||||||| ||||| |||| ||||||||||||||||    
T  1116499 gtatattttaacataaaaggggaggggagtgtaattcaagcatcttt 1116453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 38011862 - 38011912
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaagg 105  Q
    |||||||||||| ||| |||||||| |||| ||||||||||||||||||||    
T  38011862 gtatattttaacttaagagtggaggggagtgtaattcaagcatctttaagg 38011912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 27521946 - 27521995
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaag 104  Q
    ||||||||||| |||| || |||||||||| |||||||||||||||||||    
T  27521946 gtatattttaatataagaggggaggagagtgtaattcaagcatctttaag 27521995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 18406595 - 18406547
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaa 103  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||||    
T  18406595 gtatattttaacataagagaggaggggagtgtaattcaagcatctttaa 18406547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 27225741 - 27225697
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatct 99  Q
    |||||||||||||||| || |||||||||| ||||||||||||||    
T  27225741 gtatattttaacataagaggggaggagagtgtaattcaagcatct 27225697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 16536437 - 16536366
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| ||| || | || |||| |||||||    
T  16536437 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 16536366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 36605409 - 36605480
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||| ||||||| ||| || |||| |||| |||||||    
T  36605409 gtatattttaacataagaggggaggggagtgtaattcaaacatctttgaggggaggagagtgtaatttactc 36605480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 41321578 - 41321507
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || |||||||||| |||||||||||||||| ||| || | || |||| |||||||    
T  41321578 gtatattttaacttaagaggggaggagagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 41321507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 41322204 - 41322275
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || ||||| |||| |||||||||||||||| ||| || |||| |||| |||||||    
T  41322204 gtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaggagagtgtaatttactc 41322275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 41576020 - 41576091
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    ||||||||||||||||||| ||||| || | |||||||||||||||| |||  | |||| |||| |||||||    
T  41576020 gtatattttaacataaaagaggaggggaatgtaattcaagcatctttgagggtatgagagtgtaatttactc 41576091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 42831210 - 42831281
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| ||||||||| |||||||||| || | || |||| |||||||    
T  42831210 gtatattttaacataagagcggaggggagtgtaattcaagtatctttaaggggaggggagtgtaatttactc 42831281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 50144060 - 50144131
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||| |||||| ||||||||| |||||| ||| || |||| |||| |||||||    
T  50144060 gtatattttaacataagaggggatgagagtgtaattcaagtatctttgaggggaggagagtgtaatttactc 50144131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 4601712 - 4601758
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || | |||||||| ||||||||||||||||    
T  4601712 gtatattttaacataagagggaaggagagtgtaattcaagcatcttt 4601758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 19071777 - 19071731
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||||| |||||||| |||||||    
T  19071777 gtatattttaacataagaggggaggagagtgtaattcaaacatcttt 19071731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 19119667 - 19119621
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||||| |||||||| |||||||    
T  19119667 gtatattttaacataagaggggaggagagtgtaattcaaacatcttt 19119621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 19997669 - 19997619
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaagg 105  Q
    |||||||||||||||| || |||||||| | ||||| ||||||||||||||    
T  19997669 gtatattttaacataagaggggaggagaatgtaatttaagcatctttaagg 19997619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 25068390 - 25068344
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||| ||| || |||||||||| ||||||||||||||||    
T  25068390 gtatattttaacttaagaggggaggagagtgtaattcaagcatcttt 25068344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 28044544 - 28044498
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||||||  || | |||||||||||||||||||||    
T  28044544 gtatattttaacataaaagacgaagggagtataattcaagcatcttt 28044498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 45737370 - 45737324
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  45737370 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 45737324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 27930829 - 27930784
Alignment:
Q  56 tatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    ||||||||||||||| || ||||| |||| ||||||||||||||||    
T  27930829 tatattttaacataagaggggaggggagtgtaattcaagcatcttt 27930784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 43319981 - 43319928
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggaga 108  Q
    |||||||||||||||||||  |||| |||| |||||||| ||||||| ||||||    
T  43319981 gtatattttaacataaaaggagaggggagtgtaattcaaacatctttgaggaga 43319928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 11916516 - 11916468
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaa 103  Q
    |||||||||||||||| |  ||||| |||| ||||||||||||||||||    
T  11916516 gtatattttaacataataaaggaggggagtgtaattcaagcatctttaa 11916468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 27931314 - 27931358
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatct 99  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||    
T  27931314 gtatattttaacataagaggggaggggagtgtaattcaagcatct 27931358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 33979290 - 33979338
Alignment:
Q  56 tatattttaacataaaagtggaggagagtataattcaagcatctttaag 104  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||    
T  33979290 tatattttaacataaaagaggaggagagtataattcaaacatctttaag 33979338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 1263067 - 1263138
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| ||| || | ||||||| |||||||    
T  1263067 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaggggaggggaatgtaatttactc 1263138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 25480595 - 25480545
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaagg 105  Q
    |||||||||||||||| |  ||||| |||||||||||||||||||||||||    
T  25480595 gtatattttaacataagatgggaggggagtataattcaagcatctttaagg 25480545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 27255353 - 27255307
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||    
T  27255353 gtatattttaacataagaggggaggagagtgtaattcaagcatcttt 27255307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 16067292 - 16067244
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaa 103  Q
    |||||||||||||||| || |||||||||| |||||||| |||||||||    
T  16067292 gtatattttaacataagaggggaggagagtgtaattcaaacatctttaa 16067244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 4558100 - 4558029
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || ||||| |||| |||||||||||||||||||| || | || |||| |||||||    
T  4558100 gtatattttaacttaagaggggaggggagtgtaattcaagcatctttaaggggaggggagtgtaatttactc 4558029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 4558747 - 4558818
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || ||||| ||||||||||||||||||||| ||| || | || |||| |||||||    
T  4558747 gtatattttaacttaagaggggaggggagtataattcaagcatctttgaggggaggggagtgtaatttactc 4558818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 11056568 - 11056639
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || ||||| |||| |||||||||||||||||||| || | || |||| |||||||    
T  11056568 gtatattttaacttaagaggggaggggagtgtaattcaagcatctttaaggggaggggagtgtaatttactc 11056639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 51 - 126
Target Start/End: Original strand, 13625909 - 13625984
Alignment:
Q  51 gagggtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||||||| |  ||||| |||| |||||||||||||||| ||| || | || |||| |||||||    
T  13625909 gagggtatattttaacataagatgggaggggagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 13625984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 18364698 - 18364627
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| ||| || | || |||| |||||||    
T  18364698 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 18364627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 18365289 - 18365360
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| ||| || | || |||| |||||||    
T  18365289 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 18365360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 23309004 - 23308933
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || ||||| |||| |||||||||||||||||||| || | || |||| |||||||    
T  23309004 gtatattttaacttaagaggggaggggagtgtaattcaagcatctttaaggggaggggagtgtaatttactc 23308933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 33115242 - 33115313
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || |||||  ||| |||||||||||||||| || ||| |||| |||| |||||||    
T  33115242 gtatattttaacataagaggggagggaagtgtaattcaagcatctttgagaagaggagagtgtaatttactc 33115313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 44500051 - 44500122
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| |||  | |||| |||| |||||||    
T  44500051 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgagggaaggagagtgtaatttactc 44500122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 47794660 - 47794731
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| ||  |||| |||| |||||||| ||||||||||| || |||| |||| |||||||    
T  47794660 gtatattttaacataagaggagaggggagtgtaattcaaacatctttaaggggaggagagtgtaatttactc 47794731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 48842031 - 48842101
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    ||||||||||||||||||| ||||| |||| |||||||| ||||||||||| || | || |||| |||||||    
T  48842031 gtatattttaacataaaag-ggaggggagtgtaattcaatcatctttaaggggaggggagtgtaatttactc 48842101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 1262465 - 1262419
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  1262465 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 1262419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 2756615 - 2756661
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  2756615 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 2756661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 11345367 - 11345413
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  11345367 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 11345413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 56 - 126
Target Start/End: Original strand, 25259947 - 25260017
Alignment:
Q  56 tatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||||| ||||| |||| |||||||| ||| ||| ||||||   ||||||| |||||||    
T  25259947 tatattttaacataaaagaggaggggagtgtaattcaaacatgttttaggagagaggaatgtaatttactc 25260017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 30605354 - 30605400
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| |||||||| |||| |||||||| |||||||    
T  30605354 gtatattttaacataagagtggaggggagtgtaattcaaacatcttt 30605400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 32737179 - 32737225
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||| |||||| |||||| ||| ||||||||||||||||    
T  32737179 gtatattttaacttaaaaggggaggaaagtgtaattcaagcatcttt 32737225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 45241269 - 45241223
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  45241269 gtatattttaacataagagaggaggggagtgtaattcaagcatcttt 45241223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 54403627 - 54403581
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  54403627 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 54403581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 54605830 - 54605777
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggaga 108  Q
    |||||||||||||||| || ||||| |||| ||||||||||||| || ||||||    
T  54605830 gtatattttaacataagaggggaggggagtgtaattcaagcatcattgaggaga 54605777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 32905336 - 32905407
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||| ||| || |||| |||| |||||||    
T  32905336 gtatattttaacataaaaagggaggagagtgtaattcaagcatctttgaggggacgagagtgtaatttactc 32905407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 40791114 - 40791043
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||||||||||||||||| ||||||| ||| || |||| |||| |||||||    
T  40791114 gtatattttaacataagaggggaggagagtataattcaaacatctttgaggggatgagagtgtaatttactc 40791043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 34923909 - 34923860
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaagg 105  Q
    |||||||||||||||| || ||||| |||||||||||||||||||||||||    
T  34923909 gtatattttaacataagagaggagg-gagtataattcaagcatctttaagg 34923860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 37304902 - 37304947
Alignment:
Q  56 tatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||||| | |||||||| ||||||||||||||||    
T  37304902 tatattttaacataaaagagaaggagagtgtaattcaagcatcttt 37304947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 41312389 - 41312437
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaa 103  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||||    
T  41312389 gtatattttaacataagaggggaggggagtgtaattcaagcatctttaa 41312437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 3075374 - 3075303
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| ||| || | || |||| |||||||    
T  3075374 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 3075303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 14879588 - 14879517
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || |||||||||| |||||||| ||||||| ||| || | || |||| |||||||    
T  14879588 gtatattttaacataagaggggaggagagtgtaattcaaacatctttgaggggaggggagtgtaatttactc 14879517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 32904228 - 32904299
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| | | || |||| |||| |||||||    
T  32904228 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaagggatgagagtgtaatttactc 32904299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 5551621 - 5551575
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||| ||||| || |||||||||| ||||||||||||||||    
T  5551621 gtatattttagcataagagaggaggagagtgtaattcaagcatcttt 5551575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 6099485 - 6099531
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| ||  ||||||||| ||||||||||||||||    
T  6099485 gtatattttaacataagaggagaggagagtgtaattcaagcatcttt 6099531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 8442724 - 8442678
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||| |||||| ||||||||||||||||    
T  8442724 gtatattttaacataagaggggaagagagtgtaattcaagcatcttt 8442678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 11760076 - 11760122
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||| | ||||||||||||||||    
T  11760076 gtatattttaacataagagaggaggagaatgtaattcaagcatcttt 11760122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 14880197 - 14880243
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  14880197 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 14880243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 24778056 - 24778010
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||||| ||||||||| ||||||    
T  24778056 gtatattttaacataagaggggaggagagtgtaattcaagtatcttt 24778010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 34679933 - 34679979
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||  || |||||||||| ||||||||||||||||    
T  34679933 gtatattttaacatacgaggggaggagagtgtaattcaagcatcttt 34679979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 11140162 - 11140109
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggaga 108  Q
    |||||||||||||||| || ||||| |||| ||||||||| |||||| ||||||    
T  11140162 gtatattttaacataagaggggaggggagtgtaattcaagtatcttttaggaga 11140109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 107
Target Start/End: Original strand, 37266151 - 37266203
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggag 107  Q
    |||||||||||||||| || |||||||||| ||||| ||| |||||| |||||    
T  37266151 gtatattttaacataagaggggaggagagtgtaattaaagaatctttgaggag 37266203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 58 - 126
Target Start/End: Complemental strand, 39998435 - 39998367
Alignment:
Q  58 tattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    ||||||||| ||| || |||||||||| |||||||||||||||| ||| || | || |||| |||||||    
T  39998435 tattttaacttaagaggggaggagagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 39998367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 44284359 - 44284403
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatct 99  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||    
T  44284359 gtatattttaacataagaggggaggggagtgtaattcaagcatct 44284403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 32388156 - 32388227
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||  |||| |||||||||||||||| |||||| ||||||||| |||||||    
T  32388156 gtatattttaacataagaggggagtggagtgtaattcaagcatctttgaggagaggagaatgtaatttactc 32388227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 38670061 - 38669990
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || |||||||||| ||||||||||||||||||||||| | || |||| |||||||    
T  38670061 gtatattttaacttaagaggggaggagagtgtaattcaagcatctttaaggagaggggagtgtaatttactc 38669990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 5228647 - 5228693
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  5228647 gtatattttaacataaaaggggaggagagtgtaattcaagcatcttt 5228693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 19156084 - 19156155
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||  |||| |||||||| ||||||| |||||| |||| ||||||||||||    
T  19156084 gtatattttaacataagaggggagatgagtgtaattcaaacatctttgaggagaggagagtgtagtttactc 19156155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 20755483 - 20755554
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||  |||| |||||||| ||||||| |||||| |||| ||||||||||||    
T  20755483 gtatattttaacataagaggggagatgagtgtaattcaaacatctttgaggagaggagagtgtagtttactc 20755554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 40344445 - 40344516
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || |||||||||| |||||||| ||||||||||  |||| || |||| |||||||    
T  40344445 gtatattttaacataagaggggaggagagtgtaattcaaacatctttaagaggaagggagtgtaatttactc 40344516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 10412564 - 10412614
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaagg 105  Q
    |||||||||||||||| || |||||||||| |||||||||||| |||||||    
T  10412564 gtatattttaacataagaggggaggagagtgtaattcaagcatatttaagg 10412614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 29615582 - 29615536
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||    
T  29615582 gtatattttaacataagaggggaggagagtgtaattcaagcatcttt 29615536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 36848506 - 36848576
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttact 125  Q
    |||||||||||||||| ||  ||| ||||| ||||||||||||||||||||||| | || |||| ||||||    
T  36848506 gtatattttaacataagaggagagaagagtgtaattcaagcatctttaaggagaggggagtgtaatttact 36848576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 2790146 - 2790075
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || ||||| |||| |||||||| ||||||| |||||| |||| |||| |||||||    
T  2790146 gtatattttaacttaagaggggaggggagtgtaattcaaacatctttgaggagaggagagtgtaatttactc 2790075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 11639962 - 11639891
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| ||| || | || |||| |||||||    
T  11639962 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 11639891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 20261590 - 20261653
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgta 118  Q
    |||||||||||||||| || ||| |||||| |||||||||||||||| ||| || |||| ||||    
T  20261590 gtatattttaacataagaggggatgagagtgtaattcaagcatctttgaggggatgagagtgta 20261653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 29823396 - 29823325
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || |||||||||| |||||||| ||||||| ||| || | ||||||| |||||||    
T  29823396 gtatattttaacttaagaggggaggagagtgtaattcaaacatctttgaggggaggggaatgtaatttactc 29823325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 38790138 - 38790067
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| ||| || | || |||| |||||||    
T  38790138 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaggggaggggattgtaatttactc 38790067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 40401560 - 40401631
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| | | || |||| |||| |||||||    
T  40401560 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaagggaggagagtgtaatttactc 40401631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 42813587 - 42813658
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| |||  | |||| |||| |||||||    
T  42813587 gtatattttaacataagagaggaggggagtgtaattcaagcatctttgagggaatgagagtgtaatttactc 42813658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 3341449 - 3341495
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| ||  ||||||||| ||||||||||||||||    
T  3341449 gtatattttaacataagaggagaggagagtgtaattcaagcatcttt 3341495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 14078422 - 14078376
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||| |||||| ||||||||||||||||    
T  14078422 gtatattttaacataagaggggaagagagtttaattcaagcatcttt 14078376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 14388450 - 14388404
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||| |||||| ||||||||||||||||    
T  14388450 gtatattttaacataagaggggaagagagtttaattcaagcatcttt 14388404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 22711700 - 22711654
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||||| ||| ||||||||||||    
T  22711700 gtatattttaacataagaggggaggagagtgtaaatcaagcatcttt 22711654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 27619642 - 27619688
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  27619642 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 27619688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Complemental strand, 36687362 - 36687312
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaagg 105  Q
    |||||||||||||||| || |||||  ||| ||||||||||||||||||||    
T  36687362 gtatattttaacataagaggggagggaagtgtaattcaagcatctttaagg 36687312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 38987818 - 38987772
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  38987818 gtatattttaacataagaggggaggggagtttaattcaagcatcttt 38987772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 40400968 - 40400922
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||| |||||| ||||||||||||||||    
T  40400968 gtatattttaacataagaggggatgagagtgtaattcaagcatcttt 40400922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 8535443 - 8535488
Alignment:
Q  56 tatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||||| ||||| |||| |||||||| |||||||    
T  8535443 tatattttaacataaaaggggaggggagtgtaattcaaacatcttt 8535488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 59 - 108
Target Start/End: Complemental strand, 30738252 - 30738203
Alignment:
Q  59 attttaacataaaagtggaggagagtataattcaagcatctttaaggaga 108  Q
    |||||||||||| || ||| |||||| |||||||||||||||| ||||||    
T  30738252 attttaacataagagaggatgagagtgtaattcaagcatctttgaggaga 30738203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 38670692 - 38670745
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggaga 108  Q
    |||||||||||| ||| || ||||| |||| |||||||||||||||| ||||||    
T  38670692 gtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggaga 38670745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 42813088 - 42813035
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggaga 108  Q
    |||||||||||||||| || | |||| ||| |||||||||||||||| ||||||    
T  42813088 gtatattttaacataagagggaaggaaagtgtaattcaagcatctttgaggaga 42813035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 23)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 11942946 - 11943017
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||||||  |||  ||||||||||||| ||||||||||| || ||||||||| |||||||    
T  11942946 gtatattttaacataaaaggagagatgagtataattcaaacatctttaaggggaggagaatgtaatttactc 11943017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 40947497 - 40947451
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||    
T  40947497 gtatattttaacataaaaggggaggagagtgtaattcaagcatcttt 40947451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 11563862 - 11563791
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||| |||||| |||||||||||||||| ||| || |||| |||| |||||||    
T  11563862 gtatattttaacataagaggggatgagagtgtaattcaagcatctttgaggggaggagagtgtaatttactc 11563791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 1366421 - 1366471
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaagg 105  Q
    |||||||||||||||| || |||||||||| |||||||| |||||||||||    
T  1366421 gtatattttaacataagagaggaggagagtgtaattcaaacatctttaagg 1366471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 5475142 - 5475188
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||    
T  5475142 gtatattttaacataagaggggaggagagtgtaattcaagcatcttt 5475188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 7940002 - 7940048
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    ||||||||||||||||||| |||||||||| |||||||| |||||||    
T  7940002 gtatattttaacataaaaggggaggagagtgtaattcaaacatcttt 7940048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 12414301 - 12414369
Alignment:
Q  58 tattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    ||||||||||||| || |||||||| | |||||||| ||||||| ||| || ||||||||| |||||||    
T  12414301 tattttaacataagagaggaggagaatgtaattcaaacatctttgaggggaggagaatgtaatttactc 12414369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 126
Target Start/End: Original strand, 12426361 - 12426429
Alignment:
Q  58 tattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    ||||||||||||| || |||||||| | |||||||| ||||||| ||| || ||||||||| |||||||    
T  12426361 tattttaacataagagaggaggagaatgtaattcaaacatctttgaggggaggagaatgtaatttactc 12426429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 3044993 - 3044947
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| ||  ||||||||| ||||||||||||||||    
T  3044993 gtatattttaacataagaggtgaggagagtgtaattcaagcatcttt 3044947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 7939392 - 7939346
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || | |||||||| ||||||||||||||||    
T  7939392 gtatattttaacataagagggaaggagagtgtaattcaagcatcttt 7939346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 14335716 - 14335766
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaagg 105  Q
    ||||||||||||||||||  | | |||||| ||||||||||||||||||||    
T  14335716 gtatattttaacataaaatagaaagagagtgtaattcaagcatctttaagg 14335766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 16111175 - 16111221
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||| ||| |||||||| |||| ||||||||||||||||    
T  16111175 gtatattttaacttaagagtggaggggagtgtaattcaagcatcttt 16111221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 37009060 - 37009014
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  37009060 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 37009014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 105
Target Start/End: Original strand, 40020763 - 40020813
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaagg 105  Q
    |||||||||||||||| || || ||  ||||||||||||||||||||||||    
T  40020763 gtatattttaacataagaggggtgggaagtataattcaagcatctttaagg 40020813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 8313721 - 8313668
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggaga 108  Q
    |||||||||||||||| || ||||| |||| ||||||||||||| || ||||||    
T  8313721 gtatattttaacataagaggggaggggagtgtaattcaagcatccttgaggaga 8313668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 13873994 - 13874047
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggaga 108  Q
    |||||||||||||||| || |||| ||||| |||||||| ||||||||| ||||    
T  13873994 gtatattttaacataagagaggagaagagtgtaattcaaacatctttaaagaga 13874047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 14014119 - 14014172
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggaga 108  Q
    |||||||||||||||| || |||| ||||| |||||||| ||||||||| ||||    
T  14014119 gtatattttaacataagagaggagaagagtgtaattcaaacatctttaaagaga 14014172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 16599590 - 16599541
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaag 104  Q
    |||||||||||||||| |  |||| | |||||||||||||||||||||||    
T  16599590 gtatattttaacataagaagggagaaaagtataattcaagcatctttaag 16599541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 108
Target Start/End: Complemental strand, 32875222 - 32875169
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggaga 108  Q
    |||||||||||||||| || | || ||||| |||||||||||||||| ||||||    
T  32875222 gtatattttaacataagagagaagaagagtgtaattcaagcatcttttaggaga 32875169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 104
Target Start/End: Complemental strand, 38910740 - 38910691
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaag 104  Q
    |||||||||||||||| || ||||| |||| |||||||| ||||||||||    
T  38910740 gtatattttaacataagagaggaggggagtgtaattcaaacatctttaag 38910691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 82 - 126
Target Start/End: Complemental strand, 8726765 - 8726721
Alignment:
Q  82 agtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||||||||| |||||| || |||| |||||||    
T  8726765 agtataattcaagcatctttaaagagaagtgagtgtaatttactc 8726721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Original strand, 10357129 - 10357177
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaa 103  Q
    |||||||||||||||| || ||||| |||| ||||||||||||| ||||    
T  10357129 gtatattttaacataagaggggaggggagtgtaattcaagcatcattaa 10357177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 44332391 - 44332435
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatct 99  Q
    |||||||||||||||| || ||| |||||| ||||||||||||||    
T  44332391 gtatattttaacataagaggggatgagagtgtaattcaagcatct 44332435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 32)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 108
Target Start/End: Original strand, 56310075 - 56310128
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggaga 108  Q
    |||||||||||||||| || |||||||||| |||||||||||||||| ||||||    
T  56310075 gtatattttaacataagagaggaggagagtgtaattcaagcatctttgaggaga 56310128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 17730189 - 17730260
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||||||  ||||||||| |||||||||||||||| ||| || | || |||| |||||||    
T  17730189 gtatattttaacataaaaggagaggagagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 17730260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 46095472 - 46095401
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || |||||||||| |||||||||||||||| ||| || | ||||||| |||||||    
T  46095472 gtatattttaacttaagaggggaggagagtgtaattcaagcatctttgaggggaggggaatgtaatttactc 46095401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 13482249 - 13482203
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||    
T  13482249 gtatattttaacataagaggggaggagagtgtaattcaagcatcttt 13482203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 25010066 - 25010112
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||||| ||||||||||||||||    
T  25010066 gtatattttaacataagaggggaggagagtgtaattcaagcatcttt 25010112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 57 - 126
Target Start/End: Complemental strand, 37423207 - 37423138
Alignment:
Q  57 atattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||| | |||||| |||| |||||||||||||||| ||| || |||| |||| |||||||    
T  37423207 atattttaacataagaatggaggggagtgtaattcaagcatctttgaggggaggagagtgtaatttactc 37423138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 17722816 - 17722768
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaa 103  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||||    
T  17722816 gtatattttaacataagaggggaggggagtgtaattcaagcatctttaa 17722768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 51019717 - 51019673
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatct 99  Q
    |||||||||||||||| || |||||||||| ||||||||||||||    
T  51019717 gtatattttaacataagaggggaggagagtgtaattcaagcatct 51019673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 615500 - 615429
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| |||| ||| |||| |||||||||||||||| ||| || |||| |||| |||||||    
T  615500 gtatattttaacttaagagtgaaggggagtgtaattcaagcatctttgaggggaggagagtgtaatttactc 615429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 12250740 - 12250669
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || ||||| |||| |||||||||||||||| ||| |||| || |||| |||||||    
T  12250740 gtatattttaacttaagaggggaggggagtgtaattcaagcatctttgaggggaagggagtgtaatttactc 12250669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 16192324 - 16192395
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| || ||| | || |||| |||||||    
T  16192324 gtatattttaacataagagaggaggggagtgtaattcaagcatctttcagtagaggggagtgtaatttactc 16192395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 26705678 - 26705749
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| | | |||| || |||| |||||||    
T  26705678 gtatattttaacataagagaggaggggagtgtaattcaagcatctttgaagggaagggagtgtaatttactc 26705749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 33047238 - 33047309
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||| || |||||||| || | ||||||| |||||||    
T  33047238 gtatattttaacataagaggggaggggagtgtaattcaaacaactttaaggggaggggaatgtaatttactc 33047309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 44665194 - 44665265
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    ||||||||||||||||||| ||||| |||  ||||||||||| |||| ||| || |||| |||| |||||||    
T  44665194 gtatattttaacataaaaggggaggggagcgtaattcaagcaactttgaggggaggagagtgtaatttactc 44665265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 45847776 - 45847847
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||  || | |||||||||||||||||||| || | ||||||| |||||||    
T  45847776 gtatattttaacataagagaggagaggattgtaattcaagcatctttaaggtgaggggaatgtaatttactc 45847847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 47030491 - 47030562
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| || |||||||||| |||||||||||||||| ||| || | || |||| |||||||    
T  47030491 gtatattttaacttaagaggggaggagagtgtaattcaagcatctttgaggggaggggagtgtaatttactc 47030562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 755535 - 755581
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    ||||||||||| |||| || ||||| |||||||||||||||||||||    
T  755535 gtatattttaatataagaggggaggggagtataattcaagcatcttt 755581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 19313411 - 19313365
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||| |||||| ||||||||||||||||    
T  19313411 gtatattttaacataagaggggatgagagtgtaattcaagcatcttt 19313365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 23722060 - 23722106
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  23722060 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 23722106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 30192575 - 30192529
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||||||| |||||||| |||||||    
T  30192575 gtatattttaacataagaggggaggagagtgtaattcaaacatcttt 30192529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 35667292 - 35667338
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  35667292 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 35667338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 125
Target Start/End: Original strand, 35667390 - 35667460
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttact 125  Q
    |||||||||||||||| || |||||  ||| |||||||||||||||| ||| |||| || |||| ||||||    
T  35667390 gtatattttaacataagaggggagggaagtgtaattcaagcatctttgaggggaagggagtgtaatttact 35667460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 35667575 - 35667621
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||| ||| ||||||||||||||||    
T  35667575 gtatattttaacataagaggggaggaaagtgtaattcaagcatcttt 35667621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 35667765 - 35667811
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  35667765 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 35667811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 41919917 - 41919963
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||| ||||| ||||||||||||||||    
T  41919917 gtatattttaacataagagaggagaagagtgtaattcaagcatcttt 41919963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 54096724 - 54096770
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    ||||||||||||||||||| |||||||||| ||| |||| |||||||    
T  54096724 gtatattttaacataaaaggggaggagagtgtaactcaaacatcttt 54096770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 55068909 - 55068863
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  55068909 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 55068863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 55815006 - 55815052
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||| ||| || |||||||||| ||||||||||||||||    
T  55815006 gtatattttaacgtaagagaggaggagagtgtaattcaagcatcttt 55815052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 101
Target Start/End: Complemental strand, 6232415 - 6232370
Alignment:
Q  56 tatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    ||||||||||||||| || ||||| |||| ||||||||||||||||    
T  6232415 tatattttaacataagaggggaggggagtgtaattcaagcatcttt 6232370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 104
Target Start/End: Original strand, 13772391 - 13772440
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaag 104  Q
    |||||||||||||||| || ||| |||||| |||||||| ||||||||||    
T  13772391 gtatattttaacataagagaggatgagagtgtaattcaaacatctttaag 13772440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 20545027 - 20545071
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatct 99  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||    
T  20545027 gtatattttaacataagaggggaggggagtgtaattcaagcatct 20545071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Original strand, 29429708 - 29429752
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatct 99  Q
    |||||||||||||||| || | |||||||| ||||||||||||||    
T  29429708 gtatattttaacataagagagaaggagagtgtaattcaagcatct 29429752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0068 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0068
Description:

Target: scaffold0068; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 59326 - 59255
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || |||||||||| |||||||||||||||| ||  || |||| |||| |||||||    
T  59326 gtatattttaacataagaggggaggagagtgtaattcaagcatcttttagaggaggagagtgtaatttactc 59255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 3933987 - 3934058
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || |||||  ||| |||||||||||||||| ||| ||||||| |||| |||||||    
T  3933987 gtatattttaacataagaggggagggaagtgtaattcaagcatctttgaggggaagagagtgtaatttactc 3934058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 19408605 - 19408534
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| ||| || |||| |||| |||||||    
T  19408605 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaggggaggagagtgtaatttactc 19408534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 20570836 - 20570899
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgta 118  Q
    |||||||||||||||| || |||||||||| | |||||||||||||| |||||| |||| ||||    
T  20570836 gtatattttaacataagaggggaggagagtgtgattcaagcatctttgaggagaggagagtgta 20570899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 31476973 - 31477044
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| |||||| | || |||| |||||||    
T  31476973 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaggagaggggagtgtaatttactc 31477044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 36737457 - 36737528
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||||||| || | || |||| |||||||    
T  36737457 gtatattttaacataagaggggaggggagtgtaattcaagcatctttaaggggaggggagtgtaatttactc 36737528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 36742187 - 36742116
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||| |||||| |||||||||||||||| ||| || | ||||||| |||||||    
T  36742187 gtatattttaacataagaggggatgagagtttaattcaagcatctttgaggggaggggaatgtaatttactc 36742116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 51 - 101
Target Start/End: Original strand, 13686626 - 13686676
Alignment:
Q  51 gagggtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||||||| || ||| |||||| ||||||||||||||||    
T  13686626 gagggtatattttaacataagaggggatgagagtgtaattcaagcatcttt 13686676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 32458521 - 32458567
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    ||||||||||| ||||||| |||||||||| ||||||||||||||||    
T  32458521 gtatattttaatataaaaggggaggagagtgtaattcaagcatcttt 32458567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 56 - 105
Target Start/End: Original strand, 31601553 - 31601602
Alignment:
Q  56 tatattttaacataaaagtggaggagagtataattcaagcatctttaagg 105  Q
    |||||||||| ||||||| ||||| |||| ||||||||||||||||||||    
T  31601553 tatattttaatataaaaggggaggggagtgtaattcaagcatctttaagg 31601602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 104
Target Start/End: Original strand, 27028650 - 27028698
Alignment:
Q  56 tatattttaacataaaagtggaggagagtataattcaagcatctttaag 104  Q
    ||||||||||||||| || ||||| |||| |||||||||||||||||||    
T  27028650 tatattttaacataagagaggaggggagtgtaattcaagcatctttaag 27028698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 8573357 - 8573428
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || | |||||||| |||||||||||||||| ||  |||| |||| || |||||||    
T  8573357 gtatattttaacataagagggaaggagagtgtaattcaagcatctttgagatgaagggaatataatttactc 8573428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 13686034 - 13685963
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||| |||||| ||||||||| |||||| |||||| | || |||| |||||||    
T  13686034 gtatattttaacataagaggggatgagagtgtaattcaaggatctttgaggagaggggagtgtaatttactc 13685963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 17781054 - 17781124
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| ||| || |||| |||| |||||||    
T  17781054 gtatattttaacataagaggggagg-gagtgtaattcaagcatctttgaggggaggagagtgtaatttactc 17781124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 27979297 - 27979226
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| |||||||||||||||| ||| || ||||  ||| |||||||    
T  27979297 gtatattttaacataagaggggaggggagtgtaattcaagcatctttgaggggaggagatggtaatttactc 27979226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 4055417 - 4055463
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||| ||| || |||||||||| ||||||||||||||||    
T  4055417 gtatattttaacttaagaggggaggagagtgtaattcaagcatcttt 4055463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 6029520 - 6029474
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||| |||||| ||||||||||||||||    
T  6029520 gtatattttaacataagagaggatgagagtgtaattcaagcatcttt 6029474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 9017713 - 9017667
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||||    
T  9017713 gtatattttaacataagaggggaggggagtgtaattcaagcatcttt 9017667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 60 - 118
Target Start/End: Original strand, 38498043 - 38498101
Alignment:
Q  60 ttttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgta 118  Q
    ||||||||||| || |||||||||| |||||||||||||||  ||| || |||||||||    
T  38498043 ttttaacataagaggggaggagagtgtaattcaagcatcttcgaggggaggagaatgta 38498101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 93
Target Start/End: Original strand, 42598996 - 42599034
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaa 93  Q
    |||||||||||||||| ||||||||||||| ||||||||    
T  42598996 gtatattttaacataagagtggaggagagtgtaattcaa 42599034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 56 - 101
Target Start/End: Original strand, 1932031 - 1932076
Alignment:
Q  56 tatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    ||||||||||||||| || ||||| ||||||||||||| |||||||    
T  1932031 tatattttaacataagagaggaggggagtataattcaaacatcttt 1932076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 4877383 - 4877424
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagca 96  Q
    |||||||||||||||| || |||||||||| |||||||||||    
T  4877383 gtatattttaacataagaggggaggagagtgtaattcaagca 4877424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 20570194 - 20570150
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatct 99  Q
    |||||||||||||||| || ||||| |||| ||||||||||||||    
T  20570194 gtatattttaacataagagaggaggggagtgtaattcaagcatct 20570150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 31850070 - 31850026
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatct 99  Q
    |||||||||||||||| || ||| |||||| ||||||||||||||    
T  31850070 gtatattttaacataagagaggatgagagtgtaattcaagcatct 31850026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 31362 - 31408
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    ||||||||||||||||||| |||||| ||| ||||||||||||||||    
T  31362 gtatattttaacataaaaggggaggaaagtgtaattcaagcatcttt 31408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold2113 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold2113
Description:

Target: scaffold2113; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 792 - 721
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||| ||| |||||||| |||| |||||||||||||||| ||| || | || |||| |||||||    
T  792 gtatattttaacttaagagtggaggggagtgtaattcaagcatctttgaggggatgggagtgtaatttactc 721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0533 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0533
Description:

Target: scaffold0533; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 9551 - 9481
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    ||||||||||||||| ||  ||||| ||||||||||||||||||||| ||| || |||| |||| |||||||    
T  9551 gtatattttaacatagaaagggagg-gagtataattcaagcatctttgaggggaggagagtgtaatttactc 9481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0368 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0368
Description:

Target: scaffold0368; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Original strand, 11266 - 11337
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||| |||| ||||||||| |||||||||| || | || |||| |||||||    
T  11266 gtatattttaacataagagcggaggggagtgtaattcaagtatctttaaggggaggggagtgtaatttactc 11337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0289 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0289
Description:

Target: scaffold0289; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 126
Target Start/End: Complemental strand, 3474 - 3403
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaaggagaagagaatgtagtttactc 126  Q
    |||||||||||||||| || ||||||| || |||||||||||||||| ||| || | || |||| |||||||    
T  3474 gtatattttaacataagaggggaggagtgtgtaattcaagcatctttgaggggaggggagtgtaatttactc 3403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 55 - 101
Target Start/End: Complemental strand, 11355 - 11309
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatcttt 101  Q
    |||||||||||||||| || |||||| ||| ||||||||||||||||    
T  11355 gtatattttaacataagaggggaggaaagtgtaattcaagcatcttt 11309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0361 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0361
Description:

Target: scaffold0361; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 103
Target Start/End: Complemental strand, 16551 - 16503
Alignment:
Q  55 gtatattttaacataaaagtggaggagagtataattcaagcatctttaa 103  Q
    |||||||||||||||| |  ||||| |||| ||||||||||||||||||    
T  16551 gtatattttaacataagatgggaggggagtgtaattcaagcatctttaa 16503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University