View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF12457_high_2 (Length: 285)
Name: NF12457_high_2
Description: NF12457
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF12457_high_2 |
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Alignment Details
Target: chr5 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 14 - 268
Target Start/End: Complemental strand, 41455963 - 41455711
Alignment:
| Q |
14 |
aattattgcttaacaagaaactaaaccttaattcatatgtatgtcttt-cggctaacagcttaaattatttggaagggtaaaacataatggacctaattg |
112 |
Q |
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| T |
41455963 |
aattcttgcttaacaagaaactaaaccttaattcatatgtatgtcttttcggctaacaacttaaattat----aagggtaaa-cataatggacctaattg |
41455869 |
T |
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| Q |
113 |
tcatgttattcaagtcannnnnnnaaataa-tcaaaataaaattatattaccacacaatagtagttcccaagcacaatgtatctctaggagaccactaca |
211 |
Q |
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| T |
41455868 |
ttatgttattcaagtcattttttttaacaagtcaaaataaaattatattaccacacaatagtagttcccaagcacaatgtgtgcctaggagaccactaca |
41455769 |
T |
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| Q |
212 |
aatatacaaagtgaattagtattaaaag-gaaaaaacccaacagtggttagtcaatgc |
268 |
Q |
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| T |
41455768 |
aatatacaaagtgaatcagtatcaaaagaaaaaaaactcaacagtggttaatcaatgc |
41455711 |
T |
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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 196 - 261
Target Start/End: Original strand, 7554969 - 7555033
Alignment:
| Q |
196 |
ctaggagaccactacaaatatacaaagtgaattagtattaaaaggaaaaaacccaacagtggttag |
261 |
Q |
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| T |
7554969 |
ctaggataccactacaaatatacaaagtgaatcagtatcaaaa-gagaaaaaccaacagtggttag |
7555033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 209
Target Start/End: Original strand, 44616198 - 44616267
Alignment:
| Q |
141 |
aatcaaaataaaattatattaccaca-caatagtagttcccaagcacaatgtatctctaggagaccacta |
209 |
Q |
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| T |
44616198 |
aatcaaaatgaaattatataactacaacaatagcagttcccaagcacaaggtttgcctaggagaccacta |
44616267 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 144 - 220
Target Start/End: Complemental strand, 692273 - 692196
Alignment:
| Q |
144 |
caaaataaaattatattaccaca-caatagtagttcccaagcacaatgtatctctaggagaccactacaaatatacaa |
220 |
Q |
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| T |
692273 |
caaaatgaaattatataaccacaacaatagcagttccaaagcacaatgtgtgcctaagagaccactaaaaatatacaa |
692196 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 56356522 - 56356592
Alignment:
| Q |
152 |
aattatattaccacaca-atagtagttcccaagcacaatgtatctctaggagaccactacaaatatacaaa |
221 |
Q |
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||||||||||| |||| |||| ||||||||||||||| || | ||| |||||||||||||||||||||| |
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| T |
56356522 |
aattatattacgacaccgatagcagttcccaagcacaaggtgtgcctaagagaccactacaaatatacaaa |
56356592 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 3728591 - 3728522
Alignment:
| Q |
141 |
aatcaaaataaaattatattaccaca-caatagtagttcccaagcacaatgtatctctaggagaccacta |
209 |
Q |
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||||||||| ||||||||| |||||| |||||| ||||| ||| ||||| |||| | ||||||||||||| |
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| T |
3728591 |
aatcaaaatgaaattatataaccacaacaatagcagttctcaaacacaaggtatgtttaggagaccacta |
3728522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 209
Target Start/End: Complemental strand, 36069625 - 36069555
Alignment:
| Q |
141 |
aatcaaaataaaattatattaccac-acaat-agtagttcccaagcacaatgtatctctaggagaccacta |
209 |
Q |
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||||||||| ||||||||||||||| ||||| || ||||||||||||||| || | |||||||||||||| |
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| T |
36069625 |
aatcaaaatgaaattatattaccacaacaatcagcagttcccaagcacaaggtgtgcctaggagaccacta |
36069555 |
T |
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